Wall clock time and date at job start Tue Mar 31 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30842 * 125.89825 * 2 1 4 4 N 1.40081 * 108.20371 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03338 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47151 * 270.02483 * 5 4 3 7 7 H 1.08001 * 119.99994 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99845 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99619 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00323 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47161 * 89.99895 * 10 8 6 12 12 H 1.48504 * 109.47412 * 209.99962 * 10 8 6 13 13 H 1.48506 * 109.47247 * 330.00253 * 10 8 6 14 14 C 1.34944 * 107.92709 * 0.02562 * 4 3 2 15 15 C 1.50706 * 126.12455 * 179.73681 * 14 4 3 16 16 C 1.35316 * 107.74798 * 359.97438 * 14 4 3 17 17 C 1.50694 * 126.04098 * 180.02562 * 16 14 4 18 18 C 1.52999 * 109.47550 * 89.99899 * 17 16 14 19 19 C 1.50704 * 109.47167 * 180.02562 * 18 17 16 20 20 O 1.21271 * 120.00005 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99417 * 179.97438 * 19 18 17 22 22 C 1.48138 * 122.64914 * 354.18961 * 21 19 18 23 23 C 1.53221 * 110.45373 * 131.53392 * 22 21 19 24 24 O 1.43929 * 111.85026 * 45.50655 * 23 22 21 25 25 C 1.41089 * 111.16514 * 301.84149 * 24 23 22 26 26 H 1.09000 * 109.83661 * 309.00872 * 25 24 23 27 27 C 1.53095 * 119.00197 * 181.95897 * 25 24 23 28 28 C 1.55473 * 103.19368 * 201.93142 * 27 25 24 29 29 C 1.55038 * 106.31102 * 23.50074 * 28 27 25 30 30 C 1.45639 * 122.63858 * 174.47882 * 21 19 18 31 31 H 1.09000 * 109.90663 * 119.15107 * 30 21 19 32 32 H 1.09007 * 109.47013 * 90.02733 * 1 2 3 33 33 H 1.08997 * 109.47041 * 210.02380 * 1 2 3 34 34 H 1.08994 * 109.47750 * 330.03006 * 1 2 3 35 35 H 1.08999 * 109.47103 * 30.02474 * 5 4 3 36 36 H 1.08994 * 109.47151 * 150.02932 * 5 4 3 37 37 H 0.97005 * 119.99465 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.47299 * 90.01965 * 15 14 4 39 39 H 1.08997 * 109.46830 * 210.01805 * 15 14 4 40 40 H 1.08999 * 109.46932 * 330.01808 * 15 14 4 41 41 H 1.09002 * 109.47548 * 210.00110 * 17 16 14 42 42 H 1.09008 * 109.46816 * 329.99760 * 17 16 14 43 43 H 1.09001 * 109.47057 * 300.00109 * 18 17 16 44 44 H 1.08997 * 109.46800 * 59.99847 * 18 17 16 45 45 H 1.08993 * 109.23780 * 251.92301 * 22 21 19 46 46 H 1.09000 * 109.23109 * 11.29817 * 22 21 19 47 47 H 1.09000 * 109.15890 * 284.81435 * 23 22 21 48 48 H 1.08993 * 108.89225 * 166.02906 * 23 22 21 49 49 H 1.08997 * 110.93977 * 83.28486 * 27 25 24 50 50 H 1.09000 * 110.31508 * 320.28540 * 27 25 24 51 51 H 1.09006 * 110.08362 * 264.29051 * 28 27 25 52 52 H 1.09004 * 110.13544 * 142.74261 * 28 27 25 53 53 H 1.09001 * 110.28972 * 245.11547 * 29 28 27 54 54 H 1.08996 * 110.28854 * 122.99610 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7898 1.5009 0.0003 6 6 5.1948 1.7976 -1.4207 7 1 4.6287 1.3824 -2.2414 8 6 6.2873 2.5999 -1.6729 9 7 6.6404 2.8592 -2.9129 10 14 7.2660 3.3185 -0.2534 11 1 8.3541 2.3805 0.1227 12 1 7.8537 4.6186 -0.6653 13 1 6.3684 3.5278 0.9110 14 6 3.6142 -0.7153 0.0004 15 6 4.8351 -1.5988 -0.0048 16 6 2.3271 -1.1330 0.0002 17 6 1.8599 -2.5657 0.0005 18 6 1.7015 -3.0503 1.4431 19 6 1.2349 -4.4833 1.4433 20 8 1.0480 -5.0603 0.3931 21 7 1.0264 -5.1238 2.6106 22 6 1.3557 -4.5208 3.9230 23 6 0.1768 -4.6678 4.8907 24 8 -0.3782 -5.9955 4.8611 25 6 -0.8104 -6.3381 3.5625 26 1 -1.4546 -5.5524 3.1677 27 6 -1.4738 -7.6991 3.3360 28 6 -1.2764 -7.9410 1.8129 29 6 -0.0565 -7.0827 1.3902 30 6 0.4653 -6.4660 2.6809 31 1 1.1778 -7.1418 3.1537 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3634 0.8902 0.5133 35 1 4.5562 2.4335 0.5138 36 1 5.6093 0.9985 0.5141 37 1 7.4089 3.4240 -3.0904 38 1 5.1334 -1.8123 1.0217 39 1 4.6056 -2.5326 -0.5181 40 1 5.6491 -1.0906 -0.5216 41 1 0.9012 -2.6354 -0.5135 42 1 2.5936 -3.1872 -0.5131 43 1 2.6602 -2.9807 1.9571 44 1 0.9680 -2.4288 1.9566 45 1 2.2302 -5.0210 4.3389 46 1 1.5793 -3.4628 3.7860 47 1 -0.5999 -3.9526 4.6196 48 1 0.5207 -4.4495 5.9016 49 1 -2.5338 -7.6624 3.5871 50 1 -0.9670 -8.4687 3.9182 51 1 -2.1644 -7.6247 1.2655 52 1 -1.0760 -8.9955 1.6233 53 1 -0.3663 -6.3014 0.6962 54 1 0.7088 -7.7116 0.9355 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053382646.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:05 Heat of formation + Delta-G solvation = -31.130835 kcal Electronic energy + Delta-G solvation = -33235.601645 eV Core-core repulsion = 28979.867312 eV Total energy + Delta-G solvation = -4255.734333 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.23060 -41.83843 -39.68293 -37.18728 -36.09801 -35.82901 -34.83657 -34.25429 -32.03945 -30.80795 -30.66191 -29.36549 -28.55894 -27.78885 -27.39465 -25.09051 -24.02677 -23.66882 -22.21788 -21.63099 -20.34452 -20.16018 -19.96072 -19.25685 -17.84578 -17.63476 -17.37684 -17.18662 -16.87432 -16.37234 -16.06619 -15.88331 -15.75368 -15.40008 -15.17573 -14.84696 -14.78099 -14.59168 -14.33196 -14.12318 -14.00273 -13.89069 -13.61803 -13.55582 -13.49666 -13.33347 -13.12098 -12.88763 -12.83201 -12.64105 -12.55894 -12.53472 -12.44139 -12.25229 -11.97985 -11.93092 -11.90499 -11.82693 -11.73730 -11.42870 -11.20056 -11.13774 -10.92020 -10.30012 -9.84511 -9.45748 -9.02282 -8.43422 -6.54719 1.13381 1.31323 1.34350 1.44675 1.62279 1.77821 1.89101 2.01458 2.23917 2.59518 2.88628 3.38227 3.54191 3.76165 3.84966 3.86901 3.90657 3.97319 4.08963 4.19241 4.20388 4.27962 4.30408 4.30750 4.38390 4.43731 4.51143 4.52322 4.57264 4.61067 4.63809 4.67726 4.72088 4.77192 4.83372 4.84669 4.87302 4.90970 4.99046 5.02413 5.03975 5.11492 5.11856 5.21280 5.23151 5.29369 5.32396 5.39196 5.50541 5.62663 5.91084 6.05034 6.09161 6.38576 6.40688 6.50330 7.05311 7.09900 7.18300 8.73406 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.002012 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.227669 B =13910.097498 C =14076.830666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.057 3.943 3 N -0.346 5.346 4 N -0.355 5.355 5 C 0.242 3.758 6 C -0.551 4.551 7 H 0.020 0.980 8 C 0.018 3.982 9 N -0.938 5.938 10 Si 0.953 3.047 11 H -0.249 1.249 12 H -0.278 1.278 13 H -0.245 1.245 14 C 0.081 3.919 15 C -0.090 4.090 16 C -0.256 4.256 17 C -0.003 4.003 18 C -0.122 4.122 19 C 0.520 3.480 20 O -0.564 6.564 21 N -0.615 5.615 22 C 0.071 3.929 23 C 0.043 3.957 24 O -0.378 6.378 25 C 0.068 3.932 26 H 0.057 0.943 27 C -0.107 4.107 28 C -0.115 4.115 29 C -0.123 4.123 30 C 0.100 3.900 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.273 0.727 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.132 0.868 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.084 0.916 53 H 0.078 0.922 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 -21.240 20.162 32.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 N -0.170 5.170 4 N -0.135 5.135 5 C 0.122 3.878 6 C -0.589 4.589 7 H 0.038 0.962 8 C -0.181 4.181 9 N -0.576 5.576 10 Si 0.774 3.226 11 H -0.173 1.173 12 H -0.203 1.203 13 H -0.169 1.169 14 C -0.048 4.048 15 C -0.148 4.148 16 C -0.268 4.268 17 C -0.042 4.042 18 C -0.162 4.162 19 C 0.311 3.689 20 O -0.444 6.444 21 N -0.348 5.348 22 C -0.051 4.051 23 C -0.033 4.033 24 O -0.296 6.296 25 C 0.009 3.991 26 H 0.075 0.925 27 C -0.144 4.144 28 C -0.154 4.154 29 C -0.161 4.161 30 C -0.005 4.005 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.150 0.850 49 H 0.106 0.894 50 H 0.100 0.900 51 H 0.092 0.908 52 H 0.102 0.898 53 H 0.097 0.903 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.930 -20.152 19.638 31.398 hybrid contribution 0.879 0.260 -0.678 1.140 sum -13.051 -19.892 18.960 30.422 Atomic orbital electron populations 1.20204 0.84759 1.03964 1.03211 1.22770 0.98096 0.90194 0.99801 1.77204 0.87692 1.24879 1.27202 1.48670 1.05121 1.04974 1.54733 1.19656 0.80957 0.90527 0.96687 1.21262 1.13723 1.32659 0.91250 0.96187 1.25892 0.97724 0.95342 0.99156 1.70048 1.27827 1.38099 1.21627 0.85646 0.79390 0.78720 0.78871 1.17314 1.20316 1.16854 1.21453 0.98245 0.84583 1.00493 1.20527 0.92333 0.97678 1.04272 1.19700 0.90472 0.96428 1.20179 1.19350 1.01207 0.88418 0.95246 1.21664 1.04168 0.91040 0.99346 1.21055 0.76168 0.89247 0.82435 1.90647 1.52606 1.68868 1.32236 1.48179 1.63727 1.16318 1.06613 1.22772 0.99005 1.01464 0.81813 1.23280 0.94980 0.83415 1.01671 1.87893 1.79660 1.33475 1.28610 1.22949 0.94225 0.98932 0.83043 0.92499 1.22134 1.01480 0.94336 0.96490 1.22526 0.97613 1.00730 0.94483 1.22110 0.98151 0.99702 0.96105 1.22316 0.95841 0.84021 0.98282 0.90465 0.90713 0.88372 0.90828 0.93740 0.91429 0.91738 0.87917 0.88784 0.92226 0.91333 0.91986 0.87669 0.87342 0.89534 0.86595 0.91898 0.85026 0.89353 0.89992 0.90768 0.89776 0.90337 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.12 71.24 0.72 -0.89 16 2 C 0.06 2.04 7.22 43.10 0.31 2.35 16 3 N -0.35 -15.64 12.58 -47.38 -0.60 -16.24 16 4 N -0.36 -16.13 3.60 -338.40 -1.22 -17.35 16 5 C 0.24 11.59 4.88 85.63 0.42 12.01 16 6 C -0.55 -32.07 9.94 25.60 0.25 -31.81 16 7 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 8 C 0.02 1.05 5.47 84.65 0.46 1.51 16 9 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 10 Si 0.95 41.12 27.47 68.60 1.88 43.00 16 11 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.25 -9.78 6.54 99.48 0.65 -9.12 16 14 C 0.08 3.07 6.93 41.41 0.29 3.36 16 15 C -0.09 -2.72 9.69 71.24 0.69 -2.03 16 16 C -0.26 -8.53 5.35 -20.15 -0.11 -8.64 16 17 C 0.00 -0.08 4.44 29.85 0.13 0.05 16 18 C -0.12 -2.31 4.13 29.85 0.12 -2.19 16 19 C 0.52 11.13 7.67 87.66 0.67 11.81 16 20 O -0.56 -16.03 12.91 -3.00 -0.04 -16.07 16 21 N -0.61 -10.43 2.96 -791.61 -2.34 -12.77 16 22 C 0.07 0.73 6.53 86.14 0.56 1.30 16 23 C 0.04 0.41 6.83 72.06 0.49 0.90 16 24 O -0.38 -5.72 10.86 -147.75 -1.60 -7.33 16 25 C 0.07 1.01 3.01 31.52 0.09 1.11 16 26 H 0.06 0.93 8.01 -2.39 -0.02 0.91 16 27 C -0.11 -1.24 6.78 31.48 0.21 -1.02 16 28 C -0.12 -1.44 6.89 32.14 0.22 -1.22 16 29 C -0.12 -2.27 5.36 31.05 0.17 -2.10 16 30 C 0.10 1.72 3.13 45.81 0.14 1.86 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.10 1.88 7.92 -2.39 -0.02 1.86 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 2.14 7.20 -2.39 -0.02 2.13 16 36 H 0.07 2.86 7.09 -2.39 -0.02 2.84 16 37 H 0.27 15.48 8.31 -92.70 -0.77 14.70 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.36 16 39 H 0.09 2.49 7.14 -2.39 -0.02 2.47 16 40 H 0.06 2.08 7.73 -2.39 -0.02 2.07 16 41 H 0.07 1.82 7.88 -2.39 -0.02 1.80 16 42 H 0.06 1.72 7.10 -2.38 -0.02 1.71 16 43 H 0.11 1.72 7.90 -2.39 -0.02 1.70 16 44 H 0.11 1.69 7.94 -2.39 -0.02 1.67 16 45 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.12 0.83 6.31 -2.39 -0.02 0.81 16 47 H 0.06 0.56 8.09 -2.39 -0.02 0.55 16 48 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 52 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.08 1.87 5.74 -2.39 -0.01 1.85 16 54 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.71 421.42 3.07 -75.64 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.83 Total: 22.18 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.86 Total: -13.65 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -3.86 Total: -103.77 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.64 Total: -23.40 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.88 Total: 43.00 kcal Total: -78.71 3.07 -75.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053382646.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.509 kcal (2) G-P(sol) polarization free energy of solvation -78.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds