Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38349 * 119.85989 * 2 1 4 4 C 1.37969 * 120.14256 * 180.28649 * 3 2 1 5 5 C 1.39539 * 119.85674 * 359.97438 * 4 3 2 6 6 C 1.47897 * 120.14008 * 180.02562 * 5 4 3 7 7 N 1.30166 * 125.46085 * 359.69776 * 6 5 4 8 8 N 1.40269 * 107.76957 * 179.88706 * 7 6 5 9 9 C 1.46499 * 126.57370 * 180.11519 * 8 7 6 10 10 N 1.46897 * 109.47337 * 270.30777 * 9 8 7 11 11 C 1.46897 * 111.00233 * 170.00016 * 10 9 8 12 12 C 1.50710 * 109.46982 * 284.40993 * 11 10 9 13 13 H 1.08000 * 119.99863 * 4.67114 * 12 11 10 14 14 C 1.37876 * 119.99895 * 184.66864 * 12 11 10 15 15 N 1.31518 * 120.00323 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99788 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47246 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47108 * 120.00529 * 16 14 12 19 19 H 1.48506 * 109.47116 * 239.99971 * 16 14 12 20 20 C 1.46899 * 111.00098 * 293.95529 * 10 9 8 21 21 C 1.52994 * 109.47346 * 164.54227 * 20 10 9 22 22 C 1.53005 * 109.47094 * 176.90052 * 21 20 10 23 23 C 1.53004 * 109.46952 * 296.89350 * 21 20 10 24 24 C 1.34993 * 106.85564 * 0.37211 * 8 7 6 25 25 S 1.71201 * 126.27393 * 179.77662 * 24 8 7 26 26 O 1.34428 * 107.45418 * 359.78054 * 24 8 7 27 27 C 1.39537 * 119.71645 * 0.02562 * 5 4 3 28 28 C 1.37965 * 119.85985 * 0.02562 * 27 5 4 29 29 H 1.09006 * 109.46806 * 269.72449 * 1 2 3 30 30 H 1.08999 * 109.47151 * 29.71829 * 1 2 3 31 31 H 1.09001 * 109.47767 * 149.72394 * 1 2 3 32 32 H 1.08000 * 119.92524 * 0.27857 * 3 2 1 33 33 H 1.08006 * 120.06737 * 180.02562 * 4 3 2 34 34 H 1.09007 * 109.47006 * 30.30993 * 9 8 7 35 35 H 1.09001 * 109.47182 * 150.30730 * 9 8 7 36 36 H 1.09003 * 109.47357 * 44.40838 * 11 10 9 37 37 H 1.08999 * 109.47638 * 164.41183 * 11 10 9 38 38 H 0.96991 * 120.00371 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.46890 * 284.54069 * 20 10 9 40 40 H 1.09002 * 109.46991 * 44.53498 * 20 10 9 41 41 H 1.08997 * 109.47290 * 56.89555 * 21 20 10 42 42 H 1.08997 * 109.47457 * 59.99605 * 22 21 20 43 43 H 1.09007 * 109.46884 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.46844 * 299.99523 * 22 21 20 45 45 H 1.08997 * 109.47290 * 300.00206 * 23 21 20 46 46 H 1.09008 * 109.46808 * 60.00074 * 23 21 20 47 47 H 1.08998 * 109.47000 * 179.97438 * 23 21 20 48 48 H 1.08004 * 120.06741 * 179.97438 * 27 5 4 49 49 H 1.07998 * 119.92726 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.1998 0.0000 4 6 3.5754 1.2066 -0.0060 5 6 4.2760 -0.0001 -0.0115 6 6 5.7550 -0.0001 -0.0173 7 7 6.5101 1.0601 -0.0235 8 7 7.8465 0.6338 -0.0248 9 6 9.0357 1.4894 -0.0288 10 7 9.4264 1.7784 -1.4151 11 6 10.4632 2.8179 -1.4640 12 6 9.8379 4.1637 -1.2007 13 1 8.7918 4.2316 -0.9412 14 6 10.6015 5.3082 -1.2911 15 7 11.8754 5.2255 -1.6076 16 14 9.8264 6.9762 -0.9655 17 1 8.3904 6.7981 -0.6317 18 1 10.5209 7.6313 0.1719 19 1 9.9518 7.8255 -2.1773 20 6 9.8714 0.5584 -2.1018 21 6 9.8998 0.8045 -3.6115 22 6 10.4366 -0.4402 -4.3212 23 6 8.4829 1.1024 -4.1064 24 6 7.8268 -0.7159 -0.0276 25 16 9.1921 -1.7489 -0.0356 26 8 6.5387 -1.1004 -0.0230 27 6 3.5753 -1.2068 -0.0114 28 6 2.1957 -1.1999 -0.0065 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3635 -0.8875 -0.5181 32 1 1.6523 2.1331 0.0046 33 1 4.1119 2.1440 -0.0055 34 1 8.8133 2.4230 0.4882 35 1 9.8529 0.9781 0.4800 36 1 11.2187 2.6137 -0.7054 37 1 10.9291 2.8204 -2.4494 38 1 12.4125 6.0306 -1.6715 39 1 10.8710 0.2922 -1.7582 40 1 9.1818 -0.2559 -1.8792 41 1 10.5468 1.6542 -3.8291 42 1 9.7895 -1.2900 -4.1036 43 1 10.4563 -0.2650 -5.3969 44 1 11.4459 -0.6525 -3.9686 45 1 7.8359 0.2526 -3.8889 46 1 8.1004 1.9891 -3.6008 47 1 8.5032 1.2781 -5.1819 48 1 4.1119 -2.1441 -0.0161 49 1 1.6523 -2.1332 -0.0061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057995729.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = 80.893213 kcal Electronic energy + Delta-G solvation = -30219.872238 eV Core-core repulsion = 26275.915408 eV Total energy + Delta-G solvation = -3943.956830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.67952 -39.76708 -38.09488 -36.12042 -34.54798 -33.93602 -32.64466 -31.74182 -31.43107 -28.22518 -27.29318 -27.16541 -26.63963 -24.57148 -23.81045 -23.49532 -22.71931 -21.55666 -21.21190 -19.25761 -18.63532 -17.66367 -17.64232 -16.90476 -16.47273 -15.85070 -15.55324 -15.45222 -15.09015 -14.73601 -14.34018 -14.23502 -14.14938 -13.94092 -13.76507 -13.28586 -12.90430 -12.76114 -12.72007 -12.39926 -12.36769 -12.09483 -11.96714 -11.88514 -11.72880 -11.67299 -11.54564 -11.44843 -11.33179 -11.12939 -10.84858 -10.72228 -10.43758 -10.30792 -10.19243 -9.83974 -9.45162 -9.32914 -9.10302 -8.53977 -7.89101 -7.79293 -7.43691 -6.12938 -4.15938 0.14462 0.70703 0.92618 1.01297 1.68087 1.89417 2.54166 3.24590 3.27956 3.32893 3.36700 3.61448 4.28433 4.32183 4.38219 4.43643 4.54068 4.64850 4.81173 4.85759 4.94125 5.13731 5.21062 5.23100 5.28065 5.37140 5.41558 5.49874 5.55767 5.58960 5.67460 5.74513 5.86657 5.90618 5.97580 6.00796 6.08496 6.09673 6.20881 6.24698 6.34649 6.39891 6.48512 6.58635 6.83416 6.88840 6.96411 7.04895 7.17034 7.66279 7.83900 7.97519 8.31085 8.91071 9.49248 10.97108 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.008257 B = 0.003191 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.399790 B = 8771.535401 C =10702.728023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 C -0.123 4.123 4 C -0.056 4.056 5 C -0.041 4.041 6 C 0.272 3.728 7 N -0.241 5.241 8 N -0.352 5.352 9 C 0.304 3.696 10 N -0.541 5.541 11 C 0.198 3.802 12 C -0.514 4.514 13 H 0.064 0.936 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.050 3.950 21 C -0.091 4.091 22 C -0.142 4.142 23 C -0.131 4.131 24 C 0.412 3.588 25 S -0.479 6.479 26 O -0.214 6.214 27 C -0.069 4.069 28 C -0.124 4.124 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.089 0.911 36 H -0.003 1.003 37 H 0.049 0.951 38 H 0.262 0.738 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.137 0.863 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.671 -11.173 2.532 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.076 4.076 5 C -0.043 4.043 6 C 0.046 3.954 7 N -0.068 5.068 8 N -0.153 5.153 9 C 0.096 3.904 10 N -0.267 5.267 11 C 0.074 3.926 12 C -0.552 4.552 13 H 0.082 0.918 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.079 4.079 21 C -0.110 4.110 22 C -0.200 4.200 23 C -0.188 4.188 24 C 0.113 3.887 25 S -0.348 6.348 26 O -0.104 6.104 27 C -0.089 4.089 28 C -0.142 4.142 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.147 0.853 35 H 0.107 0.893 36 H 0.015 0.985 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.155 0.845 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.911 -10.561 2.255 22.651 hybrid contribution -0.130 0.511 0.453 0.695 sum -20.041 -10.050 2.707 22.583 Atomic orbital electron populations 1.20894 0.90547 1.03394 1.02868 1.20241 0.96673 0.93087 0.95740 1.21027 0.93282 0.98257 1.01504 1.21265 0.94285 0.97075 0.94995 1.17247 0.82426 0.95585 1.09076 1.24626 0.94168 0.79709 0.96848 1.77786 0.88343 1.20373 1.20257 1.51063 1.05242 1.04066 1.54891 1.22605 0.79715 0.93527 0.94558 1.62097 1.44362 1.09536 1.10702 1.19815 0.87199 0.87543 0.98068 1.21169 0.96575 0.90216 1.47278 0.91760 1.24964 0.94790 0.99321 0.95198 1.69951 1.06148 1.28999 1.48181 0.86458 0.79439 0.83778 0.77852 1.19661 1.21063 1.20971 1.22535 0.99411 0.91925 0.93981 1.21098 0.97586 0.98027 0.94313 1.21782 1.00748 0.97798 0.99633 1.21643 0.96085 1.01566 0.99504 1.27433 0.87125 0.88324 0.85856 1.93507 1.16523 1.56253 1.68545 1.85405 1.15576 1.34646 1.74794 1.21272 0.94550 0.96999 0.96083 1.20985 0.93300 0.98179 1.01737 0.90529 0.90989 0.91050 0.84649 0.83948 0.85319 0.89333 0.98487 0.93280 0.92788 0.94407 0.91316 0.90421 0.93208 0.93103 0.92925 0.94720 0.91122 0.93985 0.84528 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.01 36.00 0.36 -0.12 16 2 C -0.06 -0.37 5.89 -104.54 -0.62 -0.98 16 3 C -0.12 -0.90 9.68 -39.64 -0.38 -1.28 16 4 C -0.06 -0.53 9.68 -39.19 -0.38 -0.91 16 5 C -0.04 -0.43 5.87 -104.97 -0.62 -1.05 16 6 C 0.27 3.74 7.94 -14.30 -0.11 3.62 16 7 N -0.24 -3.83 12.16 31.97 0.39 -3.44 16 8 N -0.35 -6.07 3.61 -65.08 -0.24 -6.31 16 9 C 0.30 5.66 5.84 -63.32 -0.37 5.30 16 10 N -0.54 -11.11 3.89 -239.98 -0.93 -12.05 16 11 C 0.20 4.79 4.59 -4.97 -0.02 4.76 16 12 C -0.51 -13.48 8.61 -34.44 -0.30 -13.77 16 13 H 0.06 1.69 7.65 -52.49 -0.40 1.28 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 16 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.05 0.95 3.69 -3.83 -0.01 0.94 16 21 C -0.09 -1.65 2.92 -90.62 -0.26 -1.91 16 22 C -0.14 -2.19 9.19 37.16 0.34 -1.85 16 23 C -0.13 -2.27 9.06 37.16 0.34 -1.93 16 24 C 0.41 7.06 7.17 54.15 0.39 7.45 16 25 S -0.48 -8.95 28.12 -107.50 -3.02 -11.97 16 26 O -0.21 -3.24 10.44 3.16 0.03 -3.20 16 27 C -0.07 -0.59 9.71 -39.20 -0.38 -0.98 16 28 C -0.12 -0.84 9.68 -39.64 -0.38 -1.22 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.14 1.38 7.82 -52.48 -0.41 0.97 16 34 H 0.13 2.45 7.31 -51.93 -0.38 2.07 16 35 H 0.09 1.63 7.69 -51.93 -0.40 1.23 16 36 H 0.00 -0.07 8.00 -51.93 -0.42 -0.48 16 37 H 0.05 1.28 6.18 -51.93 -0.32 0.96 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 40 H 0.07 1.32 4.26 -51.29 -0.22 1.10 16 41 H 0.08 1.55 6.43 -51.93 -0.33 1.22 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 1.39 7.69 -51.92 -0.40 0.99 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.14 1.07 7.89 -52.48 -0.41 0.65 16 49 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 415.78 15.07 6.27 6.27 Total: -1.00 -30.02 415.78 -11.77 -41.79 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.47 Total: 0.20 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.51 Total: -2.44 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.04 Total: -46.45 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: 0.03 Total: -3.20 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -3.02 Total: -11.97 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.02 -11.77 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057995729.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.684 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds