Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38349 * 119.85989 * 2 1 4 4 C 1.37969 * 120.14256 * 180.28649 * 3 2 1 5 5 C 1.39539 * 119.85674 * 359.97438 * 4 3 2 6 6 C 1.47897 * 120.14008 * 180.02562 * 5 4 3 7 7 N 1.30166 * 125.46085 * 359.69776 * 6 5 4 8 8 N 1.40269 * 107.76957 * 179.88706 * 7 6 5 9 9 C 1.46499 * 126.57370 * 180.11519 * 8 7 6 10 10 N 1.46897 * 109.47337 * 270.30777 * 9 8 7 11 11 C 1.46897 * 111.00233 * 170.00016 * 10 9 8 12 12 C 1.50710 * 109.46982 * 284.40993 * 11 10 9 13 13 H 1.08000 * 119.99863 * 4.67114 * 12 11 10 14 14 C 1.37876 * 119.99895 * 184.66864 * 12 11 10 15 15 N 1.31518 * 120.00323 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99788 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47246 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47108 * 120.00529 * 16 14 12 19 19 H 1.48506 * 109.47116 * 239.99971 * 16 14 12 20 20 C 1.46899 * 111.00098 * 293.95529 * 10 9 8 21 21 C 1.52994 * 109.47346 * 164.54227 * 20 10 9 22 22 C 1.53005 * 109.47094 * 176.90052 * 21 20 10 23 23 C 1.53004 * 109.46952 * 296.89350 * 21 20 10 24 24 C 1.34993 * 106.85564 * 0.37211 * 8 7 6 25 25 S 1.71201 * 126.27393 * 179.77662 * 24 8 7 26 26 O 1.34428 * 107.45418 * 359.78054 * 24 8 7 27 27 C 1.39537 * 119.71645 * 0.02562 * 5 4 3 28 28 C 1.37965 * 119.85985 * 0.02562 * 27 5 4 29 29 H 1.09006 * 109.46806 * 269.72449 * 1 2 3 30 30 H 1.08999 * 109.47151 * 29.71829 * 1 2 3 31 31 H 1.09001 * 109.47767 * 149.72394 * 1 2 3 32 32 H 1.08000 * 119.92524 * 0.27857 * 3 2 1 33 33 H 1.08006 * 120.06737 * 180.02562 * 4 3 2 34 34 H 1.09007 * 109.47006 * 30.30993 * 9 8 7 35 35 H 1.09001 * 109.47182 * 150.30730 * 9 8 7 36 36 H 1.09003 * 109.47357 * 44.40838 * 11 10 9 37 37 H 1.08999 * 109.47638 * 164.41183 * 11 10 9 38 38 H 0.96991 * 120.00371 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.46890 * 284.54069 * 20 10 9 40 40 H 1.09002 * 109.46991 * 44.53498 * 20 10 9 41 41 H 1.08997 * 109.47290 * 56.89555 * 21 20 10 42 42 H 1.08997 * 109.47457 * 59.99605 * 22 21 20 43 43 H 1.09007 * 109.46884 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.46844 * 299.99523 * 22 21 20 45 45 H 1.08997 * 109.47290 * 300.00206 * 23 21 20 46 46 H 1.09008 * 109.46808 * 60.00074 * 23 21 20 47 47 H 1.08998 * 109.47000 * 179.97438 * 23 21 20 48 48 H 1.08004 * 120.06741 * 179.97438 * 27 5 4 49 49 H 1.07998 * 119.92726 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.1998 0.0000 4 6 3.5754 1.2066 -0.0060 5 6 4.2760 -0.0001 -0.0115 6 6 5.7550 -0.0001 -0.0173 7 7 6.5101 1.0601 -0.0235 8 7 7.8465 0.6338 -0.0248 9 6 9.0357 1.4894 -0.0288 10 7 9.4264 1.7784 -1.4151 11 6 10.4632 2.8179 -1.4640 12 6 9.8379 4.1637 -1.2007 13 1 8.7918 4.2316 -0.9412 14 6 10.6015 5.3082 -1.2911 15 7 11.8754 5.2255 -1.6076 16 14 9.8264 6.9762 -0.9655 17 1 8.3904 6.7981 -0.6317 18 1 10.5209 7.6313 0.1719 19 1 9.9518 7.8255 -2.1773 20 6 9.8714 0.5584 -2.1018 21 6 9.8998 0.8045 -3.6115 22 6 10.4366 -0.4402 -4.3212 23 6 8.4829 1.1024 -4.1064 24 6 7.8268 -0.7159 -0.0276 25 16 9.1921 -1.7489 -0.0356 26 8 6.5387 -1.1004 -0.0230 27 6 3.5753 -1.2068 -0.0114 28 6 2.1957 -1.1999 -0.0065 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3635 -0.8875 -0.5181 32 1 1.6523 2.1331 0.0046 33 1 4.1119 2.1440 -0.0055 34 1 8.8133 2.4230 0.4882 35 1 9.8529 0.9781 0.4800 36 1 11.2187 2.6137 -0.7054 37 1 10.9291 2.8204 -2.4494 38 1 12.4125 6.0306 -1.6715 39 1 10.8710 0.2922 -1.7582 40 1 9.1818 -0.2559 -1.8792 41 1 10.5468 1.6542 -3.8291 42 1 9.7895 -1.2900 -4.1036 43 1 10.4563 -0.2650 -5.3969 44 1 11.4459 -0.6525 -3.9686 45 1 7.8359 0.2526 -3.8889 46 1 8.1004 1.9891 -3.6008 47 1 8.5032 1.2781 -5.1819 48 1 4.1119 -2.1441 -0.0161 49 1 1.6523 -2.1332 -0.0061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057995729.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = 64.136118 kcal Electronic energy + Delta-G solvation = -30220.598880 eV Core-core repulsion = 26275.915408 eV Total energy + Delta-G solvation = -3944.683472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.97656 -40.41691 -39.66950 -37.50967 -35.76037 -35.31362 -34.34209 -32.86646 -32.08697 -29.62360 -28.90331 -28.19928 -28.00880 -26.05721 -25.14353 -24.72950 -23.58118 -22.97579 -22.18671 -20.77834 -19.96292 -19.03510 -18.81587 -18.56186 -17.87471 -17.06850 -16.86912 -16.42519 -16.28383 -16.12649 -15.96409 -15.40757 -14.87363 -14.75994 -14.69083 -14.53244 -14.39643 -14.00766 -13.78812 -13.67626 -13.56454 -13.48531 -13.24722 -13.15024 -13.01425 -13.00981 -12.85797 -12.64082 -12.56466 -12.47559 -12.29128 -12.09233 -12.03380 -11.86932 -11.80630 -11.44961 -11.28130 -10.61966 -10.07022 -9.87112 -9.46275 -9.28395 -9.01333 -8.21052 -6.31172 -0.78466 -0.63671 -0.38960 0.31907 0.58496 0.76801 1.23212 1.40560 1.42384 1.54484 2.38444 2.43048 2.63512 2.96767 3.14167 3.16144 3.68629 3.75597 3.85469 3.87985 3.92035 4.01796 4.07372 4.13391 4.26271 4.31788 4.33431 4.48062 4.57991 4.66100 4.69850 4.75100 4.77698 4.81654 4.90135 4.94666 4.98563 5.02505 5.09303 5.12913 5.20450 5.21292 5.23870 5.30559 5.40521 5.46122 5.54306 5.62580 5.76223 5.83497 5.98217 6.05476 6.37331 6.81893 7.38240 8.89309 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.008257 B = 0.003191 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.399790 B = 8771.535401 C =10702.728023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.045 4.045 3 C -0.125 4.125 4 C -0.063 4.063 5 C -0.072 4.072 6 C 0.294 3.706 7 N -0.271 5.271 8 N -0.353 5.353 9 C 0.312 3.688 10 N -0.542 5.542 11 C 0.216 3.784 12 C -0.521 4.521 13 H 0.062 0.938 14 C 0.010 3.990 15 N -0.929 5.929 16 Si 0.964 3.036 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.281 1.281 20 C 0.057 3.943 21 C -0.093 4.093 22 C -0.134 4.134 23 C -0.120 4.120 24 C 0.420 3.580 25 S -0.518 6.518 26 O -0.208 6.208 27 C -0.069 4.069 28 C -0.122 4.122 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.089 0.911 36 H -0.025 1.025 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.024 0.976 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.040 0.960 46 H 0.043 0.957 47 H 0.060 0.940 48 H 0.142 0.858 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.450 -11.587 2.353 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.046 4.046 3 C -0.143 4.143 4 C -0.083 4.083 5 C -0.075 4.075 6 C 0.071 3.929 7 N -0.097 5.097 8 N -0.153 5.153 9 C 0.103 3.897 10 N -0.268 5.268 11 C 0.091 3.909 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.189 4.189 15 N -0.569 5.569 16 Si 0.789 3.211 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.207 1.207 20 C -0.071 4.071 21 C -0.112 4.112 22 C -0.192 4.192 23 C -0.177 4.177 24 C 0.118 3.882 25 S -0.388 6.388 26 O -0.097 6.097 27 C -0.089 4.089 28 C -0.140 4.140 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.175 0.825 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.107 0.893 36 H -0.007 1.007 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.160 0.840 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.733 -10.984 2.083 26.235 hybrid contribution 0.763 0.584 0.532 1.098 sum -22.971 -10.401 2.615 25.351 Atomic orbital electron populations 1.20992 0.88277 1.04549 1.03924 1.20654 0.98283 0.92547 0.93080 1.21311 0.92331 0.99797 1.00879 1.21312 0.95334 0.96276 0.95403 1.17434 0.80434 0.97099 1.12501 1.25390 0.95184 0.78537 0.93806 1.77851 0.87360 1.21074 1.23458 1.50798 1.05801 1.03922 1.54734 1.22366 0.80351 0.93554 0.93391 1.62013 1.43055 1.09644 1.12063 1.19406 0.87324 0.88237 0.95909 1.21394 0.96461 0.91172 1.46877 0.91959 1.25784 0.95171 1.03033 0.94934 1.70068 1.07506 1.30066 1.49266 0.85414 0.78833 0.79141 0.77707 1.18849 1.20516 1.20707 1.22513 0.98596 0.91221 0.94752 1.21106 0.97801 0.98516 0.93732 1.21711 1.00608 0.96387 1.00451 1.21524 0.95373 1.00495 1.00347 1.27143 0.87530 0.87943 0.85541 1.93543 1.17914 1.56738 1.70607 1.85405 1.14832 1.35020 1.74462 1.21445 0.95546 0.96342 0.95548 1.21344 0.92480 0.99648 1.00512 0.89314 0.90127 0.89724 0.82534 0.84949 0.85862 0.89313 1.00678 0.95557 0.92637 0.95768 0.90903 0.92865 0.92610 0.91166 0.92975 0.94055 0.93792 0.92064 0.83984 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.01 71.23 0.71 0.26 16 2 C -0.04 -0.42 5.89 -19.81 -0.12 -0.54 16 3 C -0.13 -1.51 9.68 22.23 0.22 -1.30 16 4 C -0.06 -1.13 9.68 22.52 0.22 -0.91 16 5 C -0.07 -1.46 5.87 -20.09 -0.12 -1.58 16 6 C 0.29 8.05 7.94 87.50 0.69 8.74 16 7 N -0.27 -8.76 12.16 -167.01 -2.03 -10.79 16 8 N -0.35 -12.52 3.61 -471.92 -1.70 -14.22 16 9 C 0.31 12.13 5.84 170.81 1.00 13.13 16 10 N -0.54 -23.24 3.89 -913.16 -3.56 -26.79 16 11 C 0.22 11.00 4.59 85.56 0.39 11.39 16 12 C -0.52 -28.05 8.61 25.60 0.22 -27.83 16 13 H 0.06 3.33 7.65 -2.91 -0.02 3.30 16 14 C 0.01 0.53 5.46 84.65 0.46 0.99 16 15 N -0.93 -54.02 13.29 21.45 0.28 -53.74 16 16 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C 0.06 2.27 3.69 86.30 0.32 2.59 16 21 C -0.09 -3.39 2.92 -10.79 -0.03 -3.43 16 22 C -0.13 -4.04 9.19 71.98 0.66 -3.38 16 23 C -0.12 -4.15 9.06 71.98 0.65 -3.50 16 24 C 0.42 14.60 7.17 129.76 0.93 15.53 16 25 S -0.52 -19.76 28.12 -56.49 -1.59 -21.35 16 26 O -0.21 -6.24 10.44 -11.60 -0.12 -6.36 16 27 C -0.07 -1.05 9.71 22.52 0.22 -0.83 16 28 C -0.12 -1.23 9.68 22.23 0.22 -1.02 16 29 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 31 H 0.08 0.15 8.08 -2.39 -0.02 0.13 16 32 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.13 2.57 7.82 -2.91 -0.02 2.55 16 34 H 0.12 4.91 7.31 -2.38 -0.02 4.89 16 35 H 0.09 3.44 7.69 -2.39 -0.02 3.43 16 36 H -0.02 -1.33 8.00 -2.39 -0.02 -1.35 16 37 H 0.03 1.46 6.18 -2.39 -0.01 1.44 16 38 H 0.26 14.54 8.31 -92.72 -0.77 13.77 16 39 H 0.02 1.02 8.06 -2.39 -0.02 1.00 16 40 H 0.07 2.86 4.26 -2.79 -0.01 2.84 16 41 H 0.05 2.22 6.43 -2.39 -0.02 2.20 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.04 1.74 7.69 -2.38 -0.02 1.72 16 47 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.14 1.95 7.89 -2.91 -0.02 1.93 16 49 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -66.40 415.78 0.90 -65.50 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.95 Total: 14.35 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 6.64 Total: 8.33 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -7.01 Total: -105.54 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.12 Total: -6.36 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -19.76 SS G_CDS: -1.59 Total: -21.35 kcal Total: -66.40 0.90 -65.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057995729.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.635 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds