Wall clock time and date at job start Tue Mar 31 2020 05:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46989 * 329.22955 * 3 2 1 5 5 C 1.37093 * 119.99971 * 264.19920 * 4 3 2 6 6 H 1.08000 * 119.99872 * 198.14474 * 5 4 3 7 7 C 1.38954 * 119.99930 * 18.14913 * 5 4 3 8 8 N 1.31410 * 119.99886 * 18.67681 * 7 5 4 9 9 Si 1.86797 * 120.00107 * 198.68330 * 7 5 4 10 10 H 1.48499 * 109.47260 * 85.57859 * 9 7 5 11 11 H 1.48503 * 109.47284 * 205.58449 * 9 7 5 12 12 H 1.48500 * 109.46897 * 325.58412 * 9 7 5 13 13 C 1.34778 * 119.99978 * 84.20924 * 4 3 2 14 14 O 1.21289 * 119.99852 * 180.02562 * 13 4 3 15 15 C 1.50703 * 120.00127 * 359.97438 * 13 4 3 16 16 N 1.46500 * 109.46938 * 180.02562 * 15 13 4 17 17 C 1.37794 * 118.74613 * 90.00397 * 16 15 13 18 18 C 1.39397 * 120.10041 * 359.97438 * 17 16 15 19 19 C 1.37730 * 119.91750 * 180.02562 * 18 17 16 20 20 C 1.38783 * 120.70504 * 359.97438 * 19 18 17 21 21 C 1.36674 * 120.40153 * 0.02562 * 20 19 18 22 22 C 1.39646 * 119.79631 * 359.97438 * 21 20 19 23 23 C 1.47423 * 120.71467 * 179.71870 * 22 21 20 24 24 O 1.21763 * 121.25989 * 359.97438 * 23 22 21 25 25 C 1.47427 * 117.47453 * 179.70233 * 23 22 21 26 26 C 1.39641 * 120.71657 * 180.31689 * 25 23 22 27 27 C 1.36668 * 119.79886 * 180.30142 * 26 25 23 28 28 C 1.38786 * 120.40370 * 0.02589 * 27 26 25 29 29 C 1.37729 * 120.70071 * 359.97221 * 28 27 26 30 30 C 1.37803 * 118.73780 * 269.97712 * 16 15 13 31 31 H 1.08996 * 109.47501 * 209.22749 * 3 2 1 32 32 H 1.09004 * 109.46914 * 89.22339 * 3 2 1 33 33 H 0.97004 * 119.99960 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46855 * 60.00830 * 15 13 4 35 35 H 1.08996 * 109.46989 * 300.00363 * 15 13 4 36 36 H 1.08008 * 120.04261 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.65229 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.80284 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.10283 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.10232 * 0.27905 * 26 25 23 41 41 H 1.08000 * 119.79821 * 180.02562 * 27 26 25 42 42 H 1.07999 * 119.64537 * 179.97438 * 28 27 26 43 43 H 1.08003 * 120.04332 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1859 0.7066 5 6 3.4384 -1.1024 2.0317 6 1 4.0608 -1.8639 2.4780 7 6 2.9839 -0.0379 2.8006 8 7 1.9578 0.6752 2.3940 9 14 3.8315 0.3793 4.4120 10 1 4.9911 1.2679 4.1458 11 1 2.8732 1.0717 5.3107 12 1 4.3041 -0.8701 5.0607 13 6 3.2110 -2.3596 0.0540 14 8 3.6153 -3.3421 0.6392 15 6 2.8352 -2.4515 -1.4025 16 7 3.0467 -3.8217 -1.8759 17 6 2.0094 -4.7236 -1.7799 18 6 0.7866 -4.3278 -1.2402 19 6 -0.2476 -5.2325 -1.1456 20 6 -0.0878 -6.5398 -1.5833 21 6 1.1021 -6.9503 -2.1158 22 6 2.1633 -6.0486 -2.2207 23 6 3.4574 -6.4714 -2.7862 24 8 3.6351 -7.6117 -3.1743 25 6 4.5264 -5.4595 -2.8695 26 6 5.7767 -5.7847 -3.3995 27 6 6.7561 -4.8336 -3.4621 28 6 6.5158 -3.5466 -3.0016 29 6 5.2896 -3.2056 -2.4753 30 6 4.2755 -4.1591 -2.4006 31 1 2.9710 0.8976 0.5018 32 1 2.9714 -0.0131 -1.0276 33 1 1.6407 1.4186 2.9306 34 1 3.4551 -1.7670 -1.9816 35 1 1.7858 -2.1832 -1.5246 36 1 0.6505 -3.3131 -0.8960 37 1 -1.1933 -4.9211 -0.7272 38 1 -0.9086 -7.2370 -1.5025 39 1 1.2210 -7.9686 -2.4552 40 1 5.9693 -6.7849 -3.7587 41 1 7.7229 -5.0850 -3.8725 42 1 7.2987 -2.8047 -3.0565 43 1 5.1141 -2.2007 -2.1203 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058203414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:24 Heat of formation + Delta-G solvation = 47.379448 kcal Electronic energy + Delta-G solvation = -32079.303917 eV Core-core repulsion = 27862.616775 eV Total energy + Delta-G solvation = -4216.687141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.35614 -39.19479 -38.66185 -38.00107 -36.36200 -35.76220 -34.51468 -32.36923 -31.88509 -31.38548 -30.29866 -29.61264 -27.86936 -27.32375 -24.81839 -24.55733 -23.60155 -21.88894 -21.49319 -19.49886 -19.37491 -18.65081 -18.15840 -17.19167 -16.85400 -16.49133 -16.15797 -15.44678 -15.13516 -15.04615 -15.02799 -14.73726 -14.61351 -14.19437 -13.90732 -13.87490 -13.58042 -13.41402 -13.38830 -13.23193 -12.68974 -12.62326 -12.29155 -12.15492 -11.92292 -11.77620 -11.72776 -11.51682 -11.31363 -11.21270 -11.12844 -10.97204 -10.76203 -10.53187 -10.51398 -9.56853 -9.46147 -9.08728 -9.02738 -8.92131 -8.84446 -8.26450 -7.30836 -6.67772 -4.20433 0.59141 0.96522 1.35026 1.83230 2.59513 2.79905 2.95992 3.12390 3.15547 3.29664 3.53079 3.64823 3.74481 3.94094 4.09228 4.18470 4.50222 4.57485 4.62377 4.71865 4.79805 4.87181 4.92840 5.03872 5.08360 5.22352 5.27397 5.31108 5.35213 5.35306 5.36660 5.65232 5.66843 5.79726 5.83944 5.90608 6.02570 6.10455 6.31971 6.32006 6.42079 6.49848 6.56214 6.69170 6.73313 6.99990 7.27674 7.29936 7.64641 7.78353 8.06578 8.50963 8.78309 8.96182 9.45637 10.37205 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.003800 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.661134 B = 7366.418210 C = 8774.277558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.240 3.760 3 C 0.216 3.784 4 N -0.435 5.435 5 C -0.312 4.312 6 H 0.110 0.890 7 C 0.035 3.965 8 N -0.878 5.878 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.432 3.568 14 O -0.550 6.550 15 C 0.073 3.927 16 N -0.490 5.490 17 C 0.239 3.761 18 C -0.176 4.176 19 C -0.047 4.047 20 C -0.173 4.173 21 C -0.026 4.026 22 C -0.216 4.216 23 C 0.441 3.559 24 O -0.482 6.482 25 C -0.217 4.217 26 C -0.024 4.024 27 C -0.176 4.176 28 C -0.047 4.047 29 C -0.180 4.180 30 C 0.241 3.759 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.276 0.724 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -3.119 -11.707 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.078 4.078 3 C 0.088 3.912 4 N -0.156 5.156 5 C -0.439 4.439 6 H 0.127 0.873 7 C -0.169 4.169 8 N -0.517 5.517 9 Si 0.757 3.243 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.218 3.782 14 O -0.431 6.431 15 C -0.053 4.053 16 N -0.180 5.180 17 C 0.137 3.863 18 C -0.197 4.197 19 C -0.066 4.066 20 C -0.192 4.192 21 C -0.044 4.044 22 C -0.221 4.221 23 C 0.326 3.674 24 O -0.362 6.362 25 C -0.221 4.221 26 C -0.043 4.043 27 C -0.195 4.195 28 C -0.066 4.066 29 C -0.201 4.201 30 C 0.138 3.862 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.340 -3.905 -11.465 12.336 hybrid contribution 0.548 0.749 1.258 1.563 sum 2.888 -3.156 -10.207 11.067 Atomic orbital electron populations 1.80940 1.13429 1.08531 1.11575 1.29281 0.95334 0.92704 0.90491 1.18844 0.81772 0.94007 0.96539 1.43636 1.56190 1.05311 1.10483 1.19745 1.29692 1.10378 0.84075 0.87260 1.25305 0.94866 0.96933 0.99841 1.69795 1.20993 1.20587 1.40294 0.85845 0.78846 0.79017 0.80573 1.19912 1.20941 1.19326 1.20211 0.85820 0.83949 0.88191 1.90634 1.49229 1.35031 1.68212 1.22009 1.04548 0.82228 0.96486 1.42890 1.08948 1.10357 1.55848 1.17760 0.87328 0.88245 0.93016 1.20903 0.92037 1.01501 1.05241 1.21123 0.98104 0.92809 0.94536 1.20754 0.98165 0.96495 1.03802 1.20778 0.91164 0.98733 0.93775 1.19931 0.97685 0.93062 1.11404 1.19749 0.85900 0.86929 0.74863 1.90598 1.82939 1.20501 1.42199 1.19940 0.97781 0.93290 1.11130 1.20782 0.90553 0.99627 0.93297 1.20744 0.99863 0.93651 1.05242 1.21098 0.95622 0.96414 0.93474 1.20870 0.93253 0.99440 1.06525 1.17790 0.84472 0.93144 0.90805 0.84739 0.90060 0.91345 0.87015 0.87358 0.85039 0.85226 0.85469 0.84732 0.84794 0.85529 0.85174 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.85 18.54 42.15 0.78 -9.07 16 2 C 0.24 4.66 12.95 -20.76 -0.27 4.39 16 3 C 0.22 3.68 4.91 -6.83 -0.03 3.64 16 4 N -0.44 -9.01 2.60 -117.93 -0.31 -9.31 16 5 C -0.31 -7.39 9.33 -14.93 -0.14 -7.53 16 6 H 0.11 2.80 7.38 -52.49 -0.39 2.42 16 7 C 0.03 0.79 4.94 -17.47 -0.09 0.70 16 8 N -0.88 -20.35 9.33 55.50 0.52 -19.83 16 9 Si 0.93 18.56 29.59 -169.99 -5.03 13.53 16 10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 13 C 0.43 8.75 7.63 -10.98 -0.08 8.66 16 14 O -0.55 -13.58 16.08 5.55 0.09 -13.50 16 15 C 0.07 1.13 3.53 -5.19 -0.02 1.11 16 16 N -0.49 -8.14 2.21 -112.84 -0.25 -8.39 16 17 C 0.24 4.09 6.54 -83.90 -0.55 3.54 16 18 C -0.18 -2.84 9.14 -39.34 -0.36 -3.20 16 19 C -0.05 -0.65 10.01 -39.57 -0.40 -1.04 16 20 C -0.17 -2.23 9.98 -39.95 -0.40 -2.63 16 21 C -0.03 -0.38 9.59 -39.62 -0.38 -0.76 16 22 C -0.22 -3.65 5.89 -104.78 -0.62 -4.27 16 23 C 0.44 7.70 7.13 -32.10 -0.23 7.47 16 24 O -0.48 -8.89 16.69 5.13 0.09 -8.81 16 25 C -0.22 -3.51 5.89 -104.78 -0.62 -4.13 16 26 C -0.02 -0.33 9.59 -39.63 -0.38 -0.71 16 27 C -0.18 -1.99 9.98 -39.95 -0.40 -2.38 16 28 C -0.05 -0.53 10.01 -39.56 -0.40 -0.93 16 29 C -0.18 -2.42 9.14 -39.33 -0.36 -2.78 16 30 C 0.24 3.85 6.54 -83.90 -0.55 3.30 16 31 H 0.14 2.39 6.40 -51.93 -0.33 2.05 16 32 H 0.08 0.96 6.68 -51.93 -0.35 0.61 16 33 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16 34 H 0.11 1.31 5.29 -51.93 -0.27 1.03 16 35 H 0.11 1.58 5.39 -51.93 -0.28 1.30 16 36 H 0.13 2.18 6.02 -52.48 -0.32 1.87 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.13 1.78 7.74 -52.49 -0.41 1.37 16 40 H 0.13 1.67 7.74 -52.48 -0.41 1.27 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.13 1.60 6.01 -52.48 -0.32 1.29 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -31.70 368.28 -8.71 -40.41 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -3.89 Total: 6.97 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -6.26 Total: 2.45 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.74 Total: -46.60 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.30 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.70 -8.71 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058203414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.792 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds