Wall clock time and date at job start Tue Mar 31 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99652 * 2 1 4 4 H 1.48497 * 109.47236 * 90.00008 * 3 2 1 5 5 H 1.48503 * 109.46609 * 209.99898 * 3 2 1 6 6 H 1.48497 * 109.47304 * 329.99548 * 3 2 1 7 7 C 1.38811 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99549 * 196.05213 * 7 2 1 9 9 N 1.36933 * 119.99904 * 16.04350 * 7 2 1 10 10 C 1.47074 * 120.88149 * 27.37292 * 9 7 2 11 11 C 1.53699 * 108.27715 * 128.75310 * 10 9 7 12 12 N 1.46899 * 109.26084 * 54.08173 * 11 10 9 13 13 C 1.37874 * 111.00425 * 172.60882 * 12 11 10 14 14 N 1.32455 * 120.85041 * 63.08112 * 13 12 11 15 15 C 1.33116 * 121.41061 * 179.71661 * 14 13 12 16 16 C 1.48385 * 118.62723 * 180.27258 * 15 14 13 17 17 C 1.39751 * 120.90288 * 0.02562 * 16 15 14 18 18 C 1.38062 * 119.01246 * 179.75467 * 17 16 15 19 19 N 1.31880 * 120.88277 * 0.52712 * 18 17 16 20 20 C 1.31877 * 122.01372 * 359.72982 * 19 18 17 21 21 C 1.38056 * 120.88460 * 0.02562 * 20 19 18 22 22 N 1.31948 * 122.75371 * 0.57786 * 15 14 13 23 23 C 1.33950 * 120.42721 * 359.71274 * 22 15 14 24 24 C 1.40237 * 121.91671 * 179.97438 * 23 22 15 25 25 C 1.36302 * 119.58667 * 180.02562 * 24 23 22 26 26 C 1.39210 * 121.01899 * 0.02562 * 25 24 23 27 27 C 1.36418 * 120.91364 * 359.97438 * 26 25 24 28 28 C 1.39879 * 119.53041 * 0.02562 * 27 26 25 29 29 C 1.46906 * 111.26533 * 296.76080 * 12 11 10 30 30 C 1.47083 * 120.88168 * 207.64565 * 9 7 2 31 31 H 0.97003 * 120.00127 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.63121 * 248.51657 * 10 9 7 33 33 H 1.09004 * 109.63149 * 9.10231 * 10 9 7 34 34 H 1.09000 * 109.64593 * 294.07643 * 11 10 9 35 35 H 1.09005 * 109.42334 * 173.94930 * 11 10 9 36 36 H 1.07998 * 120.49651 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.55743 * 180.25168 * 18 17 16 38 38 H 1.08001 * 119.55780 * 179.97438 * 20 19 18 39 39 H 1.07994 * 120.49200 * 180.02562 * 21 20 19 40 40 H 1.08008 * 120.20880 * 0.02562 * 24 23 22 41 41 H 1.07996 * 119.49251 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.54237 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.23421 * 179.97438 * 27 26 25 44 44 H 1.09003 * 109.48924 * 303.13777 * 29 12 11 45 45 H 1.09001 * 109.49358 * 183.06341 * 29 12 11 46 46 H 1.09005 * 109.62574 * 350.89971 * 30 9 7 47 47 H 1.08997 * 109.63123 * 111.47945 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0587 -1.2204 0.2581 9 7 1.3656 -2.3648 -0.3288 10 6 0.1973 -2.3538 -1.2221 11 6 0.4335 -3.3847 -2.3373 12 7 0.7416 -4.6885 -1.7346 13 6 0.7983 -5.6760 -2.6952 14 7 1.7094 -5.6375 -3.6558 15 6 1.7777 -6.5878 -4.5855 16 6 2.8270 -6.4865 -5.6298 17 6 3.7276 -5.4179 -5.6412 18 6 4.6916 -5.3651 -6.6280 19 7 4.7621 -6.2994 -7.5561 20 6 3.9287 -7.3211 -7.5844 21 6 2.9377 -7.4537 -6.6324 22 7 0.9478 -7.6130 -4.6208 23 6 -0.0131 -7.7401 -3.6963 24 6 -0.9121 -8.8164 -3.7044 25 6 -1.8723 -8.8985 -2.7406 26 6 -1.9758 -7.9292 -1.7467 27 6 -1.1178 -6.8693 -1.7093 28 6 -0.1207 -6.7548 -2.6836 29 6 1.9883 -4.6359 -0.9594 30 6 1.8195 -3.6570 0.2074 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6973 -2.6184 -0.6583 33 1 0.0788 -1.3617 -1.6579 34 1 1.2689 -3.0656 -2.9605 35 1 -0.4650 -3.4698 -2.9486 36 1 3.6730 -4.6471 -4.8866 37 1 5.3946 -4.5454 -6.6427 38 1 4.0222 -8.0635 -8.3631 39 1 2.2589 -8.2932 -6.6613 40 1 -0.8439 -9.5756 -4.4696 41 1 -2.5635 -9.7282 -2.7480 42 1 -2.7456 -8.0181 -0.9943 43 1 -1.2084 -6.1235 -0.9335 44 1 2.8021 -4.2994 -1.6018 45 1 2.2175 -5.6284 -0.5713 46 1 2.7742 -3.5269 0.7172 47 1 1.0780 -4.0444 0.9060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058245736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:37 Heat of formation + Delta-G solvation = 153.679429 kcal Electronic energy + Delta-G solvation = -31648.910344 eV Core-core repulsion = 27604.958562 eV Total energy + Delta-G solvation = -4043.951783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.160 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.61118 -40.10133 -38.59265 -37.65106 -35.20832 -33.29334 -32.92597 -31.54424 -31.15847 -31.09128 -30.12000 -29.69612 -26.83926 -25.36694 -24.51521 -23.39429 -23.06751 -22.80108 -22.39874 -21.43430 -19.49347 -18.71847 -18.23658 -17.27504 -16.94912 -16.15961 -15.92430 -15.69125 -15.47409 -15.23611 -14.82036 -14.71091 -14.35954 -14.14121 -13.90237 -13.87356 -13.74610 -13.58730 -13.53280 -13.20899 -12.65844 -12.52362 -12.48040 -11.87075 -11.76281 -11.70133 -11.21733 -11.13679 -10.98640 -10.80800 -10.58964 -10.46484 -10.26833 -10.14778 -9.89636 -9.87743 -9.70735 -9.33931 -9.30348 -9.21384 -8.66805 -8.41720 -8.30296 -6.77636 -5.86592 -3.29079 -0.11474 0.41308 1.00647 1.23679 1.77345 2.87096 3.33674 3.41319 3.41970 3.43738 3.59907 3.65239 4.00809 4.03034 4.30925 4.43663 4.51249 4.67812 4.72799 4.81642 4.94658 4.96053 5.02203 5.08453 5.18832 5.29833 5.32437 5.48951 5.51207 5.67244 5.70014 5.72027 5.79632 5.84857 5.94824 6.02550 6.03583 6.14966 6.17474 6.19599 6.27449 6.32478 6.44968 6.50222 6.56713 6.74217 6.95681 6.99928 7.34233 7.38538 7.52345 7.72711 7.78303 7.97536 8.34474 9.12038 9.74432 10.32180 11.22601 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.008327 B = 0.003360 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.716244 B = 8331.958949 C =11182.034813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.181 3.819 11 C 0.042 3.958 12 N -0.486 5.486 13 C 0.415 3.585 14 N -0.548 5.548 15 C 0.369 3.631 16 C 0.004 3.996 17 C -0.123 4.123 18 C 0.091 3.909 19 N -0.478 5.478 20 C 0.088 3.912 21 C -0.128 4.128 22 N -0.508 5.508 23 C 0.166 3.834 24 C -0.114 4.114 25 C -0.074 4.074 26 C -0.136 4.136 27 C -0.042 4.042 28 C -0.144 4.144 29 C 0.051 3.949 30 C 0.150 3.850 31 H 0.255 0.745 32 H 0.030 0.970 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -18.187 -9.020 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.317 5.317 10 C 0.055 3.945 11 C -0.086 4.086 12 N -0.210 5.210 13 C 0.165 3.835 14 N -0.266 5.266 15 C 0.101 3.899 16 C -0.006 4.006 17 C -0.144 4.144 18 C -0.065 4.065 19 N -0.187 5.187 20 C -0.069 4.069 21 C -0.150 4.150 22 N -0.223 5.223 23 C 0.038 3.962 24 C -0.133 4.133 25 C -0.095 4.095 26 C -0.155 4.155 27 C -0.063 4.063 28 C -0.150 4.150 29 C -0.077 4.077 30 C 0.024 3.976 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.060 -18.096 -10.084 20.716 hybrid contribution -0.386 0.924 0.819 1.293 sum -0.446 -17.172 -9.265 19.517 Atomic orbital electron populations 1.69997 1.05235 1.25658 1.53899 1.25047 0.95331 0.98432 1.00667 0.86291 0.79172 0.83518 0.77762 1.21332 1.20445 1.21515 1.19166 0.92307 0.84475 1.42401 0.91535 1.44110 1.33890 1.01612 1.52040 1.20990 0.89119 0.96105 0.88290 1.23144 0.99596 0.86803 0.99021 1.60029 1.35693 1.05647 1.19677 1.20701 0.85829 0.90093 0.86855 1.68482 1.25236 1.28154 1.04702 1.20802 0.91840 0.86003 0.91212 1.18470 0.93455 0.95585 0.93088 1.22407 0.94182 0.98106 0.99754 1.22766 0.96735 0.96953 0.90054 1.67582 1.24984 1.02188 1.23957 1.22714 0.90998 0.95623 0.97560 1.22302 0.99221 0.99417 0.94034 1.68574 1.05140 1.23119 1.25450 1.18861 0.93253 0.94048 0.89993 1.20648 0.94939 0.97329 1.00359 1.21047 0.96783 0.98345 0.93352 1.21071 1.00198 0.94769 0.99416 1.21131 0.91397 0.97244 0.96500 1.19339 0.99697 0.96811 0.99179 1.22748 0.88169 1.00070 0.96727 1.20987 0.98401 0.86261 0.91994 0.93507 0.95142 0.88723 0.93444 0.92147 0.83303 0.82163 0.82372 0.83573 0.84469 0.85010 0.85015 0.83333 0.93180 0.92022 0.91897 0.95357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 11.15 55.49 0.62 -24.65 16 2 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 3 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.71 9.63 -15.06 -0.15 -6.86 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.23 3.03 -171.74 -0.52 -14.75 16 10 C 0.18 4.13 5.43 -3.37 -0.02 4.11 16 11 C 0.04 0.80 5.44 -3.46 -0.02 0.78 16 12 N -0.49 -8.42 3.86 -172.10 -0.66 -9.08 16 13 C 0.42 6.83 5.31 -155.07 -0.82 6.00 16 14 N -0.55 -9.12 8.99 -10.11 -0.09 -9.21 16 15 C 0.37 5.72 7.56 -157.01 -1.19 4.53 16 16 C 0.00 0.06 5.91 -104.59 -0.62 -0.56 16 17 C -0.12 -1.59 9.63 -39.08 -0.38 -1.96 16 18 C 0.09 1.06 11.17 -17.60 -0.20 0.86 16 19 N -0.48 -5.82 10.34 -13.32 -0.14 -5.96 16 20 C 0.09 0.93 11.17 -17.60 -0.20 0.73 16 21 C -0.13 -1.47 9.63 -39.08 -0.38 -1.85 16 22 N -0.51 -7.51 9.49 -9.21 -0.09 -7.60 16 23 C 0.17 2.33 6.61 -84.87 -0.56 1.77 16 24 C -0.11 -1.22 10.01 -39.53 -0.40 -1.62 16 25 C -0.07 -0.65 9.95 -39.92 -0.40 -1.05 16 26 C -0.14 -1.32 9.96 -39.88 -0.40 -1.72 16 27 C -0.04 -0.53 9.58 -39.62 -0.38 -0.91 16 28 C -0.14 -2.12 5.76 -106.63 -0.61 -2.73 16 29 C 0.05 0.89 5.40 -3.70 -0.02 0.87 16 30 C 0.15 3.00 6.69 -3.60 -0.02 2.97 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 34 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.15 1.99 7.58 -52.49 -0.40 1.59 16 37 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.15 1.50 7.59 -52.49 -0.40 1.11 16 40 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.15 1.90 7.65 -52.49 -0.40 1.50 16 44 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 45 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 46 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -30.57 389.60 -12.99 -43.55 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.12 Total: 2.35 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -6.83 Total: 3.39 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -0.88 Total: -71.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.57 -12.99 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058245736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.233 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds