Wall clock time and date at job start Tue Mar 31 2020 05:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39755 * 125.83965 * 2 1 4 4 C 1.36103 * 107.82940 * 180.13899 * 3 2 1 5 5 N 1.39480 * 126.21893 * 179.89979 * 4 3 2 6 6 C 1.34775 * 119.99780 * 359.69567 * 5 4 3 7 7 O 1.21301 * 119.99927 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00286 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47523 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47487 * 180.02562 * 9 8 6 11 11 O 1.42893 * 109.47267 * 180.02562 * 10 9 8 12 12 C 1.35956 * 117.00026 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.06128 * 359.97438 * 12 11 10 14 14 C 1.38184 * 119.96964 * 180.02562 * 13 12 11 15 15 C 1.38265 * 120.09281 * 359.97438 * 14 13 12 16 16 C 1.38248 * 120.12705 * 0.02562 * 15 14 13 17 17 C 1.38332 * 120.03366 * 359.97438 * 16 15 14 18 18 F 1.35103 * 120.05240 * 180.02562 * 17 16 15 19 19 N 1.35257 * 107.56949 * 359.64111 * 4 3 2 20 20 C 1.46497 * 126.05099 * 180.22700 * 19 4 3 21 21 C 1.50699 * 109.47544 * 89.99863 * 20 19 4 22 22 H 1.08007 * 119.99645 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00540 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00385 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99844 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47202 * 89.99697 * 25 23 21 27 27 H 1.48505 * 109.47226 * 210.00246 * 25 23 21 28 28 H 1.48501 * 109.46829 * 330.00074 * 25 23 21 29 29 N 1.30850 * 125.83966 * 179.73664 * 2 1 3 30 30 H 1.09001 * 109.47103 * 270.23722 * 1 2 3 31 31 H 1.09002 * 109.47093 * 30.24007 * 1 2 3 32 32 H 1.08997 * 109.47007 * 150.23756 * 1 2 3 33 33 H 1.08007 * 126.08725 * 0.02674 * 3 2 1 34 34 H 0.97000 * 120.00393 * 179.68560 * 5 4 3 35 35 H 1.09004 * 109.46976 * 60.00006 * 8 6 5 36 36 H 1.09001 * 109.47011 * 300.00149 * 8 6 5 37 37 H 1.09007 * 109.47098 * 60.00288 * 9 8 6 38 38 H 1.09001 * 109.47491 * 300.00335 * 9 8 6 39 39 H 1.08994 * 109.46599 * 59.99869 * 10 9 8 40 40 H 1.09001 * 109.46881 * 300.00527 * 10 9 8 41 41 H 1.08004 * 120.01774 * 0.03769 * 13 12 11 42 42 H 1.08000 * 119.95526 * 180.27319 * 14 13 12 43 43 H 1.08001 * 119.93128 * 179.97438 * 15 14 13 44 44 H 1.07998 * 119.98480 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.47235 * 209.99867 * 20 19 4 46 46 H 1.09004 * 109.47091 * 329.99762 * 20 19 4 47 47 H 0.97003 * 120.00520 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6196 0.7121 -0.0031 5 7 4.7513 1.5275 -0.0062 6 6 4.6157 2.8684 -0.0124 7 8 3.5096 3.3661 -0.0158 8 6 5.8384 3.7494 -0.0151 9 6 5.4089 5.2178 -0.0228 10 6 6.6503 6.1123 -0.0262 11 8 6.2491 7.4837 -0.0328 12 6 7.2385 8.4162 -0.0359 13 6 8.5671 8.0193 -0.0322 14 6 9.5711 8.9686 -0.0349 15 6 9.2530 10.3142 -0.0418 16 6 7.9297 10.7143 -0.0456 17 6 6.9204 9.7684 -0.0429 18 9 5.6270 10.1590 -0.0470 19 7 3.6093 -0.6404 0.0030 20 6 4.7870 -1.5116 0.0071 21 6 5.1909 -1.8039 1.4292 22 1 4.6268 -1.3824 2.2482 23 6 6.2809 -2.6084 1.6849 24 7 6.6337 -2.8630 2.9260 25 14 7.2569 -3.3368 0.2684 26 1 8.3477 -2.4039 -0.1125 27 1 7.8406 -4.6368 0.6863 28 1 6.3582 -3.5487 -0.8946 29 7 2.2732 -1.0607 0.0049 30 1 -0.3633 0.0043 1.0277 31 1 -0.3633 0.8878 -0.5176 32 1 -0.3633 -0.8921 -0.5101 33 1 1.9902 2.1597 0.0004 34 1 5.6359 1.1295 -0.0037 35 1 6.4345 3.5409 -0.9035 36 1 6.4326 3.5489 0.8765 37 1 4.8126 5.4266 0.8655 38 1 4.8149 5.4180 -0.9145 39 1 7.2461 5.9033 -0.9145 40 1 7.2447 5.9122 0.8653 41 1 8.8170 6.9686 -0.0274 42 1 10.6059 8.6592 -0.0365 43 1 10.0399 11.0539 -0.0435 44 1 7.6838 11.7659 -0.0514 45 1 4.5499 -2.4455 -0.5025 46 1 5.6084 -1.0145 -0.5090 47 1 7.4004 -3.4293 3.1059 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:59 Heat of formation + Delta-G solvation = -19.216071 kcal Electronic energy + Delta-G solvation = -30460.548329 eV Core-core repulsion = 25946.037259 eV Total energy + Delta-G solvation = -4514.511070 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.06290 -40.98051 -40.41166 -39.35194 -37.92604 -34.87471 -34.17352 -33.78491 -32.19959 -31.13298 -30.40286 -29.58828 -28.73867 -27.20849 -26.33996 -23.95955 -22.90175 -22.59921 -22.00160 -20.98679 -19.78395 -19.40079 -18.74358 -17.53542 -17.24661 -17.04861 -16.91142 -16.84524 -16.39089 -15.96861 -15.46461 -15.36669 -14.98397 -14.78711 -14.62693 -14.37161 -14.06551 -13.82461 -13.57698 -13.21081 -13.11409 -12.74716 -12.69994 -12.64685 -12.57932 -12.34195 -12.24347 -11.92498 -11.88327 -11.79801 -11.73353 -11.35789 -11.18019 -10.96647 -10.87831 -10.52302 -10.26812 -10.00565 -9.80154 -9.58553 -9.39569 -8.90728 -8.61001 -7.99205 -7.52454 -6.37513 -4.42163 0.68016 0.82534 2.16344 2.46599 2.84097 3.01742 3.03376 3.13470 3.14282 3.14753 3.52613 3.65661 3.84559 4.10018 4.24284 4.35632 4.44531 4.53461 4.64232 4.70159 4.78453 4.88489 4.89571 4.97468 4.99320 5.12407 5.26387 5.27502 5.51564 5.58368 5.61107 5.73575 5.74162 5.92706 5.93691 6.00061 6.00606 6.10878 6.19054 6.23171 6.28364 6.33751 6.61051 6.71643 6.91221 7.16021 7.41150 7.50940 7.72451 8.12824 8.26189 8.53906 8.68868 9.16947 10.74639 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.001899 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.343770 B =14743.386390 C =17017.536513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.292 4.292 4 C 0.303 3.697 5 N -0.641 5.641 6 C 0.520 3.480 7 O -0.512 6.512 8 C -0.133 4.133 9 C -0.104 4.104 10 C 0.058 3.942 11 O -0.304 6.304 12 C 0.102 3.898 13 C -0.184 4.184 14 C -0.089 4.089 15 C -0.133 4.133 16 C -0.117 4.117 17 C 0.066 3.934 18 F -0.132 7.132 19 N -0.344 5.344 20 C 0.230 3.770 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.080 3.920 24 N -0.883 5.883 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.278 1.278 28 H -0.263 1.263 29 N -0.283 5.283 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.163 0.837 34 H 0.415 0.585 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.141 0.859 45 H 0.055 0.945 46 H 0.035 0.965 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 23.412 -8.166 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.324 4.324 4 C 0.081 3.919 5 N -0.288 5.288 6 C 0.307 3.693 7 O -0.385 6.385 8 C -0.173 4.173 9 C -0.142 4.142 10 C -0.017 4.017 11 O -0.218 6.218 12 C 0.055 3.945 13 C -0.203 4.203 14 C -0.107 4.107 15 C -0.151 4.151 16 C -0.136 4.136 17 C 0.046 3.954 18 F -0.110 7.110 19 N -0.129 5.129 20 C 0.111 3.889 21 C -0.584 4.584 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.519 5.519 25 Si 0.698 3.302 26 H -0.197 1.197 27 H -0.203 1.203 28 H -0.188 1.188 29 N -0.108 5.108 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.181 0.819 34 H 0.252 0.748 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.159 0.841 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.008 22.364 -8.042 24.514 hybrid contribution 1.349 -0.093 -0.432 1.420 sum 7.357 22.271 -8.473 24.938 Atomic orbital electron populations 1.20037 0.87394 1.02391 1.02344 1.22068 0.96610 0.90981 1.01386 1.21290 0.88993 1.00536 1.21540 1.17933 0.88190 0.83081 1.02665 1.42811 1.08146 1.05735 1.72123 1.20469 0.91467 0.81250 0.76131 1.90665 1.26896 1.73643 1.47337 1.21478 0.96371 0.93909 1.05553 1.21231 0.96410 0.90663 1.05888 1.22925 0.98451 0.78447 1.01854 1.86146 1.31773 1.15649 1.88182 1.19053 0.88478 0.88215 0.98717 1.21243 0.90869 1.01299 1.06870 1.21059 0.99411 0.92605 0.97668 1.20947 0.95509 0.96279 1.02362 1.21049 0.92040 0.99372 1.01133 1.17049 0.79433 0.89786 1.09109 1.91520 1.34063 1.91243 1.94211 1.48894 1.06206 1.02018 1.55809 1.19928 0.79266 0.90064 0.99668 1.21191 1.14198 1.32677 0.90309 0.90073 1.24828 0.96652 0.95222 0.95795 1.69870 1.26797 1.36683 1.18548 0.86919 0.80726 0.79780 0.82816 1.19682 1.20333 1.18762 1.77366 0.85781 1.21754 1.25867 0.91130 0.91046 0.91498 0.81945 0.74832 0.88060 0.87733 0.89484 0.89606 0.91487 0.91367 0.84286 0.84962 0.84842 0.84082 0.92746 0.94773 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.09 7.21 -82.44 -0.59 0.49 16 3 C -0.29 -5.86 9.58 -39.78 -0.38 -6.24 16 4 C 0.30 6.18 7.66 -153.16 -1.17 5.00 16 5 N -0.64 -10.36 5.42 -11.46 -0.06 -10.42 16 6 C 0.52 7.38 7.79 -10.99 -0.09 7.29 16 7 O -0.51 -8.81 13.11 5.54 0.07 -8.74 16 8 C -0.13 -1.17 5.70 -27.89 -0.16 -1.33 16 9 C -0.10 -0.97 4.87 -26.73 -0.13 -1.10 16 10 C 0.06 0.46 4.74 37.16 0.18 0.63 16 11 O -0.30 -3.31 10.00 -19.60 -0.20 -3.51 16 12 C 0.10 1.01 6.69 -39.18 -0.26 0.74 16 13 C -0.18 -1.35 9.04 -39.45 -0.36 -1.71 16 14 C -0.09 -0.53 10.04 -39.59 -0.40 -0.93 16 15 C -0.13 -0.77 10.04 -39.57 -0.40 -1.17 16 16 C -0.12 -0.85 10.02 -39.54 -0.40 -1.25 16 17 C 0.07 0.66 7.31 -39.30 -0.29 0.38 16 18 F -0.13 -1.57 17.11 2.25 0.04 -1.53 16 19 N -0.34 -7.80 3.60 -61.57 -0.22 -8.02 16 20 C 0.23 5.29 5.07 -5.20 -0.03 5.26 16 21 C -0.55 -14.67 9.94 -34.44 -0.34 -15.01 16 22 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 23 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 24 N -0.88 -25.29 13.96 55.43 0.77 -24.51 16 25 Si 0.87 19.11 27.47 -169.99 -4.67 14.45 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 29 N -0.28 -6.46 12.56 33.65 0.42 -6.04 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.16 3.18 5.83 -52.48 -0.31 2.87 16 34 H 0.42 5.91 7.96 -40.82 -0.33 5.58 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.07 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.07 0.44 7.66 -51.93 -0.40 0.04 16 41 H 0.14 0.75 6.30 -52.48 -0.33 0.42 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.05 1.28 7.20 -51.93 -0.37 0.91 16 46 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 47 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 402.62 15.07 6.07 6.07 Total: -1.00 -34.78 402.62 -8.61 -43.39 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.30 Total: 6.32 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -4.53 Total: -7.46 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.91 Total: -48.99 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.12 Total: -12.24 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.67 Total: 14.45 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.78 -8.61 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.176 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds