Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39755 * 125.83965 * 2 1 4 4 C 1.36103 * 107.82940 * 180.13899 * 3 2 1 5 5 N 1.39480 * 126.21893 * 179.89979 * 4 3 2 6 6 C 1.34775 * 119.99780 * 359.69567 * 5 4 3 7 7 O 1.21301 * 119.99927 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00286 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47523 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47487 * 180.02562 * 9 8 6 11 11 O 1.42893 * 109.47267 * 180.02562 * 10 9 8 12 12 C 1.35956 * 117.00026 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.06128 * 359.97438 * 12 11 10 14 14 C 1.38184 * 119.96964 * 180.02562 * 13 12 11 15 15 C 1.38265 * 120.09281 * 359.97438 * 14 13 12 16 16 C 1.38248 * 120.12705 * 0.02562 * 15 14 13 17 17 C 1.38332 * 120.03366 * 359.97438 * 16 15 14 18 18 F 1.35103 * 120.05240 * 180.02562 * 17 16 15 19 19 N 1.35257 * 107.56949 * 359.64111 * 4 3 2 20 20 C 1.46497 * 126.05099 * 180.22700 * 19 4 3 21 21 C 1.50699 * 109.47544 * 89.99863 * 20 19 4 22 22 H 1.08007 * 119.99645 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00540 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00385 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99844 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47202 * 89.99697 * 25 23 21 27 27 H 1.48505 * 109.47226 * 210.00246 * 25 23 21 28 28 H 1.48501 * 109.46829 * 330.00074 * 25 23 21 29 29 N 1.30850 * 125.83966 * 179.73664 * 2 1 3 30 30 H 1.09001 * 109.47103 * 270.23722 * 1 2 3 31 31 H 1.09002 * 109.47093 * 30.24007 * 1 2 3 32 32 H 1.08997 * 109.47007 * 150.23756 * 1 2 3 33 33 H 1.08007 * 126.08725 * 0.02674 * 3 2 1 34 34 H 0.97000 * 120.00393 * 179.68560 * 5 4 3 35 35 H 1.09004 * 109.46976 * 60.00006 * 8 6 5 36 36 H 1.09001 * 109.47011 * 300.00149 * 8 6 5 37 37 H 1.09007 * 109.47098 * 60.00288 * 9 8 6 38 38 H 1.09001 * 109.47491 * 300.00335 * 9 8 6 39 39 H 1.08994 * 109.46599 * 59.99869 * 10 9 8 40 40 H 1.09001 * 109.46881 * 300.00527 * 10 9 8 41 41 H 1.08004 * 120.01774 * 0.03769 * 13 12 11 42 42 H 1.08000 * 119.95526 * 180.27319 * 14 13 12 43 43 H 1.08001 * 119.93128 * 179.97438 * 15 14 13 44 44 H 1.07998 * 119.98480 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.47235 * 209.99867 * 20 19 4 46 46 H 1.09004 * 109.47091 * 329.99762 * 20 19 4 47 47 H 0.97003 * 120.00520 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6196 0.7121 -0.0031 5 7 4.7513 1.5275 -0.0062 6 6 4.6157 2.8684 -0.0124 7 8 3.5096 3.3661 -0.0158 8 6 5.8384 3.7494 -0.0151 9 6 5.4089 5.2178 -0.0228 10 6 6.6503 6.1123 -0.0262 11 8 6.2491 7.4837 -0.0328 12 6 7.2385 8.4162 -0.0359 13 6 8.5671 8.0193 -0.0322 14 6 9.5711 8.9686 -0.0349 15 6 9.2530 10.3142 -0.0418 16 6 7.9297 10.7143 -0.0456 17 6 6.9204 9.7684 -0.0429 18 9 5.6270 10.1590 -0.0470 19 7 3.6093 -0.6404 0.0030 20 6 4.7870 -1.5116 0.0071 21 6 5.1909 -1.8039 1.4292 22 1 4.6268 -1.3824 2.2482 23 6 6.2809 -2.6084 1.6849 24 7 6.6337 -2.8630 2.9260 25 14 7.2569 -3.3368 0.2684 26 1 8.3477 -2.4039 -0.1125 27 1 7.8406 -4.6368 0.6863 28 1 6.3582 -3.5487 -0.8946 29 7 2.2732 -1.0607 0.0049 30 1 -0.3633 0.0043 1.0277 31 1 -0.3633 0.8878 -0.5176 32 1 -0.3633 -0.8921 -0.5101 33 1 1.9902 2.1597 0.0004 34 1 5.6359 1.1295 -0.0037 35 1 6.4345 3.5409 -0.9035 36 1 6.4326 3.5489 0.8765 37 1 4.8126 5.4266 0.8655 38 1 4.8149 5.4180 -0.9145 39 1 7.2461 5.9033 -0.9145 40 1 7.2447 5.9122 0.8653 41 1 8.8170 6.9686 -0.0274 42 1 10.6059 8.6592 -0.0365 43 1 10.0399 11.0539 -0.0435 44 1 7.6838 11.7659 -0.0514 45 1 4.5499 -2.4455 -0.5025 46 1 5.6084 -1.0145 -0.5090 47 1 7.4004 -3.4293 3.1059 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058289378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = -41.197064 kcal Electronic energy + Delta-G solvation = -30461.501496 eV Core-core repulsion = 25946.037259 eV Total energy + Delta-G solvation = -4515.464237 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.82692 -42.46443 -41.05514 -40.59913 -38.50908 -36.30951 -35.57409 -34.95965 -33.99109 -31.64978 -31.28020 -30.91486 -30.06367 -28.16556 -27.98835 -24.80588 -24.25632 -23.46808 -22.94734 -21.99308 -21.23883 -20.72832 -19.41404 -19.26435 -18.51499 -18.12869 -17.77902 -17.61147 -17.43131 -16.92050 -16.61034 -16.37714 -16.11043 -15.88743 -15.60521 -15.44979 -15.26700 -14.90469 -14.68605 -14.56641 -14.36497 -14.17178 -13.81145 -13.79298 -13.51705 -13.33348 -13.23016 -13.11691 -12.91459 -12.79822 -12.53785 -12.41949 -12.36925 -12.12906 -11.93389 -11.86834 -11.77838 -11.60168 -11.48745 -10.94520 -10.91148 -9.92848 -9.63226 -9.21043 -9.08921 -8.42298 -6.55348 0.14250 0.28606 0.76681 1.27032 1.33083 1.39904 1.48451 1.62128 1.97065 2.03853 2.25138 2.30770 2.62726 2.89011 3.25791 3.43902 3.75836 3.77327 3.89876 3.90306 3.96134 4.13769 4.22237 4.29147 4.34254 4.39888 4.40910 4.45085 4.57559 4.59128 4.60616 4.68247 4.85897 4.88952 4.92995 5.00176 5.01252 5.11650 5.12320 5.18311 5.19662 5.22509 5.27951 5.45246 5.73733 5.85873 5.97472 6.21330 6.32553 6.33917 6.49022 6.92743 7.02046 7.09909 8.74061 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.001899 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.343770 B =14743.386390 C =17017.536513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.059 3.941 3 C -0.309 4.309 4 C 0.302 3.698 5 N -0.639 5.639 6 C 0.517 3.483 7 O -0.545 6.545 8 C -0.119 4.119 9 C -0.100 4.100 10 C 0.059 3.941 11 O -0.335 6.335 12 C 0.079 3.921 13 C -0.186 4.186 14 C -0.085 4.085 15 C -0.129 4.129 16 C -0.119 4.119 17 C 0.025 3.975 18 F -0.154 7.154 19 N -0.366 5.366 20 C 0.238 3.762 21 C -0.554 4.554 22 H 0.021 0.979 23 C 0.024 3.976 24 N -0.934 5.934 25 Si 0.951 3.049 26 H -0.240 1.240 27 H -0.281 1.281 28 H -0.249 1.249 29 N -0.330 5.330 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.425 0.575 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.156 0.844 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.926 24.196 -10.207 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.341 4.341 4 C 0.079 3.921 5 N -0.288 5.288 6 C 0.306 3.694 7 O -0.421 6.421 8 C -0.158 4.158 9 C -0.138 4.138 10 C -0.016 4.016 11 O -0.250 6.250 12 C 0.033 3.967 13 C -0.205 4.205 14 C -0.103 4.103 15 C -0.147 4.147 16 C -0.138 4.138 17 C 0.006 3.994 18 F -0.133 7.133 19 N -0.152 5.152 20 C 0.118 3.882 21 C -0.592 4.592 22 H 0.039 0.961 23 C -0.176 4.176 24 N -0.572 5.572 25 Si 0.771 3.229 26 H -0.164 1.164 27 H -0.207 1.207 28 H -0.173 1.173 29 N -0.154 5.154 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.184 0.816 34 H 0.263 0.737 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.178 0.822 42 H 0.181 0.819 43 H 0.182 0.818 44 H 0.174 0.826 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.212 23.185 -10.088 26.910 hybrid contribution 0.303 -0.214 0.309 0.483 sum 9.515 22.971 -9.778 26.718 Atomic orbital electron populations 1.20228 0.84023 1.04166 1.03585 1.22884 0.98746 0.90153 0.98855 1.21489 0.89339 1.00756 1.22531 1.18343 0.89840 0.82767 1.01119 1.43045 1.07419 1.06089 1.72218 1.21572 0.92810 0.80695 0.74320 1.90645 1.28893 1.73949 1.48598 1.21538 0.93997 0.91740 1.08525 1.21136 0.97040 0.91632 1.04000 1.23006 0.97639 0.77039 1.03878 1.86088 1.33238 1.16915 1.88741 1.19326 0.89388 0.87918 1.00095 1.21546 0.89897 1.02814 1.06206 1.21507 1.00592 0.92385 0.95825 1.21371 0.95397 0.97214 1.00675 1.21337 0.92251 0.99744 1.00459 1.17588 0.79191 0.90959 1.11683 1.91448 1.35686 1.91498 1.94694 1.48830 1.06092 1.02770 1.57464 1.19765 0.80551 0.90712 0.97127 1.21202 1.14024 1.33033 0.90908 0.96105 1.25846 0.97621 0.95131 0.99037 1.70035 1.27826 1.37783 1.21550 0.85685 0.79524 0.78928 0.78723 1.16396 1.20691 1.17255 1.77297 0.86373 1.23465 1.28306 0.90007 0.88575 0.90403 0.81645 0.73701 0.84180 0.85266 0.91880 0.91197 0.89011 0.89590 0.82226 0.81896 0.81820 0.82625 0.93174 0.91188 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.76 10.44 71.24 0.74 -1.01 16 2 C 0.06 2.36 7.21 43.07 0.31 2.67 16 3 C -0.31 -12.61 9.58 22.14 0.21 -12.40 16 4 C 0.30 12.38 7.66 131.32 1.01 13.39 16 5 N -0.64 -20.13 5.42 -308.56 -1.67 -21.80 16 6 C 0.52 14.20 7.79 87.66 0.68 14.89 16 7 O -0.55 -18.98 13.11 -3.09 -0.04 -19.02 16 8 C -0.12 -1.80 5.70 29.85 0.17 -1.63 16 9 C -0.10 -1.79 4.87 30.59 0.15 -1.64 16 10 C 0.06 0.81 4.74 71.98 0.34 1.15 16 11 O -0.34 -7.34 10.00 -93.06 -0.93 -8.27 16 12 C 0.08 1.52 6.69 22.53 0.15 1.67 16 13 C -0.19 -2.28 9.04 22.36 0.20 -2.08 16 14 C -0.09 -0.73 10.04 22.26 0.22 -0.50 16 15 C -0.13 -1.13 10.04 22.28 0.22 -0.91 16 16 C -0.12 -1.62 10.02 22.29 0.22 -1.39 16 17 C 0.03 0.52 7.31 22.45 0.16 0.69 16 18 F -0.15 -3.96 17.11 44.97 0.77 -3.19 16 19 N -0.37 -16.81 3.60 -348.72 -1.26 -18.07 16 20 C 0.24 10.87 5.07 85.63 0.43 11.31 16 21 C -0.55 -30.56 9.94 25.60 0.25 -30.30 16 22 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 23 C 0.02 1.29 5.47 84.65 0.46 1.75 16 24 N -0.93 -54.75 13.96 21.44 0.30 -54.45 16 25 Si 0.95 38.28 27.47 68.60 1.88 40.17 16 26 H -0.24 -8.51 7.11 99.48 0.71 -7.80 16 27 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.25 -9.41 6.54 99.48 0.65 -8.76 16 29 N -0.33 -15.38 12.56 -47.45 -0.60 -15.98 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 33 H 0.17 6.60 5.83 -2.91 -0.02 6.58 16 34 H 0.42 11.34 7.96 -92.71 -0.74 10.61 16 35 H 0.14 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.42 8.10 -2.38 -0.02 1.40 16 38 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.09 0.80 7.66 -2.39 -0.02 0.79 16 40 H 0.09 0.87 7.66 -2.39 -0.02 0.85 16 41 H 0.16 1.15 6.30 -2.91 -0.02 1.13 16 42 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 43 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.05 2.32 7.20 -2.39 -0.02 2.30 16 46 H 0.07 2.67 6.93 -2.38 -0.02 2.66 16 47 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -82.68 402.62 4.63 -78.05 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.22 Total: 26.91 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.96 Total: -4.34 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -3.22 Total: -110.30 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.97 Total: -27.29 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.77 Total: -3.19 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.88 Total: 40.17 kcal Total: -82.68 4.63 -78.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.852 kcal (2) G-P(sol) polarization free energy of solvation -82.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds