Wall clock time and date at job start Tue Mar 31 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.29947 * 126.28954 * 90.02383 * 4 3 2 6 6 O 1.21296 * 110.25471 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.80899 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.55107 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46846 * 269.97485 * 8 7 6 10 10 C 1.52994 * 109.47064 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47105 * 180.02562 * 10 9 8 12 12 O 1.21294 * 119.99742 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00204 * 180.02562 * 11 10 9 14 14 C 1.39474 * 120.00199 * 179.97438 * 13 11 10 15 15 C 1.36111 * 126.21358 * 359.68103 * 14 13 11 16 16 C 1.39762 * 107.82457 * 179.90480 * 15 14 13 17 17 C 1.50698 * 125.83370 * 180.14052 * 16 15 14 18 18 N 1.30851 * 108.32381 * 0.36556 * 16 15 14 19 19 N 1.35259 * 126.21862 * 179.97438 * 14 13 11 20 20 C 1.46501 * 126.04362 * 359.96633 * 19 14 13 21 21 C 1.50696 * 109.47507 * 89.99800 * 20 19 14 22 22 H 1.08007 * 120.00054 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00488 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00610 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99812 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47327 * 89.99924 * 25 23 21 27 27 H 1.48500 * 109.47636 * 209.99987 * 25 23 21 28 28 H 1.48502 * 109.47303 * 330.00087 * 25 23 21 29 29 N 1.31124 * 106.89716 * 359.77126 * 7 6 5 30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 36 36 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 37 37 H 1.09004 * 109.46902 * 29.97089 * 8 7 6 38 38 H 1.08992 * 109.47575 * 149.97859 * 8 7 6 39 39 H 1.08999 * 109.47035 * 299.99997 * 9 8 7 40 40 H 1.09008 * 109.47095 * 59.99950 * 9 8 7 41 41 H 1.08999 * 109.47356 * 300.00001 * 10 9 8 42 42 H 1.08996 * 109.47393 * 59.99904 * 10 9 8 43 43 H 0.97008 * 120.00108 * 359.97438 * 13 11 10 44 44 H 1.07995 * 126.08766 * 0.02562 * 15 14 13 45 45 H 1.08996 * 109.47094 * 270.23295 * 17 16 15 46 46 H 1.08994 * 109.47352 * 30.24235 * 17 16 15 47 47 H 1.09002 * 109.46709 * 150.24169 * 17 16 15 48 48 H 1.09006 * 109.46963 * 209.99679 * 20 19 14 49 49 H 1.09000 * 109.47275 * 329.99607 * 20 19 14 50 50 H 0.96999 * 120.00861 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 7 4.3164 1.4430 -1.0465 6 8 5.4821 1.4434 -0.7109 7 6 5.5695 1.4440 0.6227 8 6 6.8362 1.4453 1.4391 9 6 7.2655 0.0031 1.7164 10 6 8.5519 0.0043 2.5447 11 6 8.9751 -1.4161 2.8173 12 8 8.3127 -2.3386 2.3915 13 7 10.0891 -1.6614 3.5352 14 6 10.4805 -2.9760 3.7880 15 6 9.8327 -4.1008 3.3784 16 6 10.5567 -5.2036 3.8399 17 6 10.2011 -6.6503 3.6127 18 7 11.5935 -4.7650 4.5070 19 7 11.5697 -3.3647 4.4895 20 6 12.5508 -2.4779 5.1197 21 6 12.1184 -2.1722 6.5305 22 1 11.2039 -2.5958 6.9189 23 6 12.8901 -1.3518 7.3257 24 7 12.5125 -1.0845 8.5568 25 14 14.4721 -0.6197 6.6545 26 1 14.1803 0.6891 6.0164 27 1 15.4378 -0.4243 7.7655 28 1 15.0561 -1.5419 5.6476 29 7 4.3425 1.4489 1.0850 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6764 1.9564 0.8900 37 1 7.6235 1.9590 0.8873 38 1 6.6593 1.9596 2.3836 39 1 6.4782 -0.5106 2.2681 40 1 7.4425 -0.5113 0.7718 41 1 9.3390 0.5180 1.9927 42 1 8.3754 0.5189 3.4892 43 1 10.6187 -0.9236 3.8762 44 1 8.9224 -4.1350 2.7982 45 1 9.5594 -6.9981 4.4222 46 1 9.6751 -6.7504 2.6634 47 1 11.1118 -7.2487 3.5884 48 1 13.5248 -2.9670 5.1361 49 1 12.6196 -1.5501 4.5517 50 1 13.0552 -0.5071 9.1162 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058304693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:25 Heat of formation + Delta-G solvation = 86.944904 kcal Electronic energy + Delta-G solvation = -30908.234831 eV Core-core repulsion = 26554.080303 eV Total energy + Delta-G solvation = -4354.154528 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.86911 -40.96555 -39.37928 -36.92107 -36.04934 -34.82976 -34.45926 -33.78181 -32.41480 -32.17766 -29.72055 -29.14545 -28.28825 -27.74135 -26.34157 -24.29373 -23.56050 -22.57270 -22.27376 -21.23091 -20.96854 -19.77291 -19.34423 -18.32349 -17.75125 -17.24198 -16.98865 -16.46190 -16.20368 -15.82743 -15.25768 -15.09658 -14.93992 -14.53115 -14.36458 -13.96307 -13.93281 -13.86224 -13.21308 -13.15062 -12.88745 -12.74218 -12.70500 -12.60708 -12.39361 -12.31202 -12.18999 -12.02991 -11.92214 -11.91544 -11.83955 -11.40924 -11.36495 -11.17993 -11.15897 -11.10142 -10.86703 -10.51431 -10.26065 -10.16403 -9.98236 -9.79222 -9.57784 -8.89617 -7.98671 -7.51930 -6.36462 -4.41181 0.84795 1.91568 2.17572 2.46269 2.74086 3.02763 3.04017 3.14478 3.15714 3.28351 3.53051 3.64971 3.71150 4.11127 4.34594 4.40830 4.52397 4.52797 4.64099 4.68212 4.83226 4.89617 4.99281 5.05022 5.14095 5.15146 5.22826 5.27655 5.30182 5.30947 5.45542 5.58627 5.59312 5.66585 5.71604 5.77155 5.81737 5.90515 6.00106 6.00509 6.11280 6.19049 6.28955 6.34359 6.61182 6.72160 7.17000 7.41628 7.51955 7.73168 7.88556 8.13951 8.27266 8.54448 8.69839 9.17969 10.75675 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.001839 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.380663 B =15225.731122 C =16695.164868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.029 4.029 4 C 0.171 3.829 5 N -0.386 5.386 6 O 0.077 5.923 7 C 0.189 3.811 8 C -0.030 4.030 9 C -0.102 4.102 10 C -0.135 4.135 11 C 0.519 3.481 12 O -0.514 6.514 13 N -0.641 5.641 14 C 0.304 3.696 15 C -0.292 4.292 16 C 0.054 3.946 17 C -0.063 4.063 18 N -0.283 5.283 19 N -0.344 5.344 20 C 0.230 3.770 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.080 3.920 24 N -0.882 5.882 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.278 1.278 28 H -0.263 1.263 29 N -0.479 5.479 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.416 0.584 44 H 0.163 0.837 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.054 0.946 49 H 0.035 0.965 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.544 7.459 -17.530 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.068 4.068 4 C -0.102 4.102 5 N -0.094 5.094 6 O 0.018 5.982 7 C -0.032 4.032 8 C -0.069 4.069 9 C -0.141 4.141 10 C -0.175 4.175 11 C 0.306 3.694 12 O -0.389 6.389 13 N -0.288 5.288 14 C 0.082 3.918 15 C -0.324 4.324 16 C -0.111 4.111 17 C -0.122 4.122 18 N -0.108 5.108 19 N -0.129 5.129 20 C 0.111 3.889 21 C -0.584 4.584 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.519 5.519 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.204 1.204 28 H -0.188 1.188 29 N -0.213 5.213 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.252 0.748 44 H 0.180 0.820 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.485 6.748 -17.456 24.291 hybrid contribution 0.750 1.285 -0.131 1.494 sum -14.735 8.033 -17.588 24.310 Atomic orbital electron populations 1.21745 0.94608 1.02314 1.02103 1.21501 0.96555 0.94761 1.03061 1.20048 0.82717 0.99348 1.04655 1.25888 1.00341 1.00439 0.83521 1.74632 0.89390 1.21450 1.23957 1.85295 1.22359 1.65628 1.24871 1.28796 0.97042 0.95176 0.82143 1.20333 0.88020 1.00008 0.98491 1.21338 0.97145 0.93824 1.01799 1.21592 0.99125 0.93599 1.03193 1.20575 0.79430 0.91918 0.77500 1.90656 1.52530 1.45784 1.49884 1.42835 1.27099 1.05688 1.53202 1.17940 0.91013 0.85288 0.97597 1.21282 1.06503 0.88620 1.16011 1.22063 0.94233 0.96676 0.98104 1.20033 1.01462 0.88808 1.01862 1.77365 1.22674 0.87344 1.23405 1.48897 1.19530 1.04456 1.40028 1.19928 0.87871 0.86990 0.94123 1.21192 1.11143 1.31186 0.94903 0.90074 1.24825 0.97469 0.95565 0.94612 1.69867 1.38675 1.36075 1.07263 0.86919 0.83755 0.80015 0.79554 1.19641 1.20358 1.18779 1.71916 0.99713 1.20315 1.29328 0.92127 0.92275 0.92483 0.91616 0.91103 0.89156 0.88561 0.87577 0.86732 0.89766 0.90043 0.87838 0.87535 0.74800 0.81991 0.91149 0.91081 0.91503 0.92772 0.94735 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 3 C -0.03 -0.22 5.84 -27.88 -0.16 -0.38 16 4 C 0.17 1.81 7.47 -156.37 -1.17 0.64 16 5 N -0.39 -4.47 12.16 30.90 0.38 -4.09 16 6 O 0.08 0.81 11.31 18.10 0.20 1.01 16 7 C 0.19 1.75 7.77 -13.06 -0.10 1.65 16 8 C -0.03 -0.17 5.84 -27.88 -0.16 -0.33 16 9 C -0.10 -0.80 4.49 -26.73 -0.12 -0.92 16 10 C -0.13 -1.05 5.70 -27.88 -0.16 -1.21 16 11 C 0.52 7.05 7.79 -10.98 -0.09 6.96 16 12 O -0.51 -8.57 13.11 5.55 0.07 -8.50 16 13 N -0.64 -10.11 5.42 -11.46 -0.06 -10.17 16 14 C 0.30 6.10 7.66 -153.16 -1.17 4.93 16 15 C -0.29 -5.81 9.58 -39.78 -0.38 -6.19 16 16 C 0.05 1.07 7.21 -82.44 -0.59 0.48 16 17 C -0.06 -0.92 10.44 36.00 0.38 -0.54 16 18 N -0.28 -6.42 12.56 33.65 0.42 -6.00 16 19 N -0.34 -7.73 3.60 -61.57 -0.22 -7.95 16 20 C 0.23 5.25 5.07 -5.20 -0.03 5.23 16 21 C -0.55 -14.61 9.94 -34.44 -0.34 -14.96 16 22 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 23 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 24 N -0.88 -25.21 13.96 55.43 0.77 -24.43 16 25 Si 0.87 19.04 27.47 -169.99 -4.67 14.37 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 29 N -0.48 -5.27 11.55 -9.87 -0.11 -5.38 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.08 0.71 8.10 -51.92 -0.42 0.29 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.42 5.76 7.97 -40.82 -0.33 5.43 16 44 H 0.16 3.13 5.83 -52.49 -0.31 2.82 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.05 1.27 7.20 -51.93 -0.37 0.89 16 49 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 50 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 422.47 15.07 6.37 6.37 Total: -1.00 -35.31 422.47 -8.55 -43.86 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.71 Total: 4.96 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.99 Total: -4.04 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 1.17 Total: -58.02 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.28 Total: -7.49 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.67 Total: 14.37 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -35.31 -8.55 -43.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058304693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.806 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds