Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.29947 * 126.28954 * 90.02383 * 4 3 2 6 6 O 1.21296 * 110.25471 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.80899 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.55107 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46846 * 269.97485 * 8 7 6 10 10 C 1.52994 * 109.47064 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47105 * 180.02562 * 10 9 8 12 12 O 1.21294 * 119.99742 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00204 * 180.02562 * 11 10 9 14 14 C 1.39474 * 120.00199 * 179.97438 * 13 11 10 15 15 C 1.36111 * 126.21358 * 359.68103 * 14 13 11 16 16 C 1.39762 * 107.82457 * 179.90480 * 15 14 13 17 17 C 1.50698 * 125.83370 * 180.14052 * 16 15 14 18 18 N 1.30851 * 108.32381 * 0.36556 * 16 15 14 19 19 N 1.35259 * 126.21862 * 179.97438 * 14 13 11 20 20 C 1.46501 * 126.04362 * 359.96633 * 19 14 13 21 21 C 1.50696 * 109.47507 * 89.99800 * 20 19 14 22 22 H 1.08007 * 120.00054 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00488 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00610 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99812 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47327 * 89.99924 * 25 23 21 27 27 H 1.48500 * 109.47636 * 209.99987 * 25 23 21 28 28 H 1.48502 * 109.47303 * 330.00087 * 25 23 21 29 29 N 1.31124 * 106.89716 * 359.77126 * 7 6 5 30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 36 36 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 37 37 H 1.09004 * 109.46902 * 29.97089 * 8 7 6 38 38 H 1.08992 * 109.47575 * 149.97859 * 8 7 6 39 39 H 1.08999 * 109.47035 * 299.99997 * 9 8 7 40 40 H 1.09008 * 109.47095 * 59.99950 * 9 8 7 41 41 H 1.08999 * 109.47356 * 300.00001 * 10 9 8 42 42 H 1.08996 * 109.47393 * 59.99904 * 10 9 8 43 43 H 0.97008 * 120.00108 * 359.97438 * 13 11 10 44 44 H 1.07995 * 126.08766 * 0.02562 * 15 14 13 45 45 H 1.08996 * 109.47094 * 270.23295 * 17 16 15 46 46 H 1.08994 * 109.47352 * 30.24235 * 17 16 15 47 47 H 1.09002 * 109.46709 * 150.24169 * 17 16 15 48 48 H 1.09006 * 109.46963 * 209.99679 * 20 19 14 49 49 H 1.09000 * 109.47275 * 329.99607 * 20 19 14 50 50 H 0.96999 * 120.00861 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 7 4.3164 1.4430 -1.0465 6 8 5.4821 1.4434 -0.7109 7 6 5.5695 1.4440 0.6227 8 6 6.8362 1.4453 1.4391 9 6 7.2655 0.0031 1.7164 10 6 8.5519 0.0043 2.5447 11 6 8.9751 -1.4161 2.8173 12 8 8.3127 -2.3386 2.3915 13 7 10.0891 -1.6614 3.5352 14 6 10.4805 -2.9760 3.7880 15 6 9.8327 -4.1008 3.3784 16 6 10.5567 -5.2036 3.8399 17 6 10.2011 -6.6503 3.6127 18 7 11.5935 -4.7650 4.5070 19 7 11.5697 -3.3647 4.4895 20 6 12.5508 -2.4779 5.1197 21 6 12.1184 -2.1722 6.5305 22 1 11.2039 -2.5958 6.9189 23 6 12.8901 -1.3518 7.3257 24 7 12.5125 -1.0845 8.5568 25 14 14.4721 -0.6197 6.6545 26 1 14.1803 0.6891 6.0164 27 1 15.4378 -0.4243 7.7655 28 1 15.0561 -1.5419 5.6476 29 7 4.3425 1.4489 1.0850 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6764 1.9564 0.8900 37 1 7.6235 1.9590 0.8873 38 1 6.6593 1.9596 2.3836 39 1 6.4782 -0.5106 2.2681 40 1 7.4425 -0.5113 0.7718 41 1 9.3390 0.5180 1.9927 42 1 8.3754 0.5189 3.4892 43 1 10.6187 -0.9236 3.8762 44 1 8.9224 -4.1350 2.7982 45 1 9.5594 -6.9981 4.4222 46 1 9.6751 -6.7504 2.6634 47 1 11.1118 -7.2487 3.5884 48 1 13.5248 -2.9670 5.1361 49 1 12.6196 -1.5501 4.5517 50 1 13.0552 -0.5071 9.1162 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058304693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = 62.695098 kcal Electronic energy + Delta-G solvation = -30909.286382 eV Core-core repulsion = 26554.080303 eV Total energy + Delta-G solvation = -4355.206079 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.63703 -42.42680 -40.61450 -37.61783 -36.73397 -36.22731 -35.52183 -35.10899 -33.97097 -33.15265 -31.19304 -30.35049 -28.98437 -28.74048 -28.00610 -25.14904 -24.51210 -24.09101 -23.03261 -22.24659 -21.68398 -21.20086 -20.66094 -19.24584 -19.11163 -18.59241 -18.36714 -17.68654 -17.08639 -16.70631 -16.45760 -16.15245 -15.88477 -15.74062 -15.54980 -15.19475 -14.90058 -14.76463 -14.50254 -14.35011 -14.15524 -13.92828 -13.77950 -13.60424 -13.48595 -13.18665 -13.13599 -12.94122 -12.89582 -12.79442 -12.65416 -12.51670 -12.49381 -12.11742 -12.10372 -12.02382 -11.84837 -11.76153 -11.72509 -11.67315 -11.45805 -10.92229 -10.89329 -10.85457 -9.60735 -9.05620 -8.40516 -6.53530 0.11329 0.81130 1.15295 1.33409 1.34940 1.42856 1.50384 1.66695 1.84631 2.07742 2.26234 2.26924 2.64565 2.90941 3.02503 3.51207 3.75078 3.79206 3.97549 3.98289 4.06196 4.07030 4.15028 4.24233 4.42581 4.48910 4.53569 4.60015 4.60959 4.65761 4.69459 4.71388 4.72744 4.83663 4.85234 4.86699 4.93799 4.94692 4.96314 5.12221 5.14636 5.16675 5.17948 5.20218 5.23113 5.30969 5.34861 5.87903 6.00083 6.25873 6.37445 6.51066 6.96378 7.07437 7.12120 7.14028 8.75792 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.001839 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.380663 B =15225.731122 C =16695.164868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.029 4.029 4 C 0.164 3.836 5 N -0.410 5.410 6 O 0.069 5.931 7 C 0.194 3.806 8 C -0.022 4.022 9 C -0.096 4.096 10 C -0.122 4.122 11 C 0.514 3.486 12 O -0.548 6.548 13 N -0.640 5.640 14 C 0.303 3.697 15 C -0.310 4.310 16 C 0.058 3.942 17 C -0.062 4.062 18 N -0.331 5.331 19 N -0.367 5.367 20 C 0.239 3.761 21 C -0.554 4.554 22 H 0.021 0.979 23 C 0.024 3.976 24 N -0.934 5.934 25 Si 0.950 3.050 26 H -0.240 1.240 27 H -0.282 1.282 28 H -0.249 1.249 29 N -0.506 5.506 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.146 0.854 42 H 0.130 0.870 43 H 0.425 0.575 44 H 0.166 0.834 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.076 0.924 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.778 9.537 -19.297 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.067 4.067 4 C -0.109 4.109 5 N -0.120 5.120 6 O 0.013 5.987 7 C -0.026 4.026 8 C -0.061 4.061 9 C -0.135 4.135 10 C -0.161 4.161 11 C 0.304 3.696 12 O -0.424 6.424 13 N -0.289 5.289 14 C 0.080 3.920 15 C -0.342 4.342 16 C -0.107 4.107 17 C -0.120 4.120 18 N -0.156 5.156 19 N -0.152 5.152 20 C 0.119 3.881 21 C -0.592 4.592 22 H 0.039 0.961 23 C -0.176 4.176 24 N -0.572 5.572 25 Si 0.771 3.229 26 H -0.163 1.163 27 H -0.208 1.208 28 H -0.173 1.173 29 N -0.240 5.240 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.163 0.837 42 H 0.148 0.852 43 H 0.263 0.737 44 H 0.184 0.816 45 H 0.099 0.901 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.737 8.841 -19.242 25.799 hybrid contribution 0.366 0.545 0.455 0.798 sum -14.370 9.386 -18.788 25.447 Atomic orbital electron populations 1.21723 0.92991 1.02706 1.02931 1.21450 0.97888 0.94332 1.01804 1.20202 0.81128 0.99677 1.05739 1.26430 1.01535 0.99644 0.83286 1.74613 0.89891 1.22769 1.24740 1.85256 1.22037 1.65907 1.25515 1.29491 0.97756 0.93498 0.81886 1.20533 0.87418 0.98801 0.99336 1.21218 0.96473 0.94953 1.00882 1.21703 0.99933 0.89596 1.04894 1.21783 0.77964 0.94042 0.75802 1.90636 1.53234 1.47582 1.50965 1.43110 1.27969 1.04188 1.53622 1.18366 0.90010 0.87397 0.96198 1.21483 1.06883 0.88985 1.16848 1.22877 0.92886 0.98899 0.96046 1.20221 1.02432 0.85806 1.03545 1.77295 1.24749 0.87934 1.25615 1.48828 1.20526 1.04556 1.41284 1.19757 0.87652 0.88431 0.92274 1.21211 1.09345 1.31281 0.97359 0.96097 1.25838 1.01587 0.95639 0.94524 1.70034 1.40734 1.37257 1.09176 0.85690 0.77780 0.80401 0.79018 1.16324 1.20798 1.17262 1.71934 1.00633 1.21520 1.29865 0.91971 0.91576 0.91510 0.92665 0.92548 0.87920 0.87545 0.83923 0.84944 0.92419 0.91107 0.83661 0.85178 0.73700 0.81637 0.90058 0.88589 0.90465 0.93269 0.91102 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.63 5.92 30.60 0.18 -1.45 16 3 C -0.03 -0.41 5.84 29.85 0.17 -0.24 16 4 C 0.16 3.43 7.47 138.46 1.03 4.46 16 5 N -0.41 -9.40 12.16 -60.32 -0.73 -10.13 16 6 O 0.07 1.40 11.31 74.82 0.85 2.25 16 7 C 0.19 3.33 7.77 88.38 0.69 4.02 16 8 C -0.02 -0.19 5.84 29.85 0.17 -0.02 16 9 C -0.10 -1.31 4.49 30.59 0.14 -1.17 16 10 C -0.12 -1.50 5.70 29.85 0.17 -1.33 16 11 C 0.51 13.22 7.79 87.66 0.68 13.91 16 12 O -0.55 -18.15 13.11 -3.07 -0.04 -18.19 16 13 N -0.64 -19.45 5.42 -308.56 -1.67 -21.12 16 14 C 0.30 12.20 7.66 131.32 1.01 13.21 16 15 C -0.31 -12.43 9.58 22.14 0.21 -12.22 16 16 C 0.06 2.31 7.21 43.07 0.31 2.62 16 17 C -0.06 -1.74 10.44 71.24 0.74 -0.99 16 18 N -0.33 -15.33 12.56 -47.45 -0.60 -15.93 16 19 N -0.37 -16.65 3.60 -348.71 -1.26 -17.91 16 20 C 0.24 10.80 5.07 85.63 0.43 11.23 16 21 C -0.55 -30.41 9.94 25.60 0.25 -30.15 16 22 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 23 C 0.02 1.31 5.47 84.65 0.46 1.77 16 24 N -0.93 -54.59 13.96 21.45 0.30 -54.29 16 25 Si 0.95 38.12 27.47 68.60 1.88 40.00 16 26 H -0.24 -8.43 7.11 99.48 0.71 -7.73 16 27 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.25 -9.37 6.54 99.48 0.65 -8.72 16 29 N -0.51 -10.82 11.55 -303.19 -3.50 -14.33 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.14 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 1.10 8.10 -2.39 -0.02 1.09 16 40 H 0.07 1.13 8.10 -2.38 -0.02 1.11 16 41 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.13 1.11 8.14 -2.39 -0.02 1.10 16 43 H 0.42 10.91 7.97 -92.70 -0.74 10.17 16 44 H 0.17 6.46 5.83 -2.91 -0.02 6.44 16 45 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.05 2.26 7.20 -2.38 -0.02 2.25 16 49 H 0.07 2.67 6.93 -2.39 -0.02 2.65 16 50 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -82.89 422.47 2.78 -80.11 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.17 Total: 26.57 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 7.38 Total: 2.96 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -7.46 Total: -133.71 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.81 Total: -15.94 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.88 Total: 40.00 kcal Total: -82.89 2.78 -80.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058304693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.805 kcal (2) G-P(sol) polarization free energy of solvation -82.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds