Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.52999 * 109.46944 * 240.00439 * 2 1 3 5 5 C 1.52997 * 109.47473 * 120.00162 * 2 1 3 6 6 H 1.08998 * 109.47153 * 304.45673 * 5 2 1 7 7 N 1.46904 * 109.46740 * 64.45055 * 5 2 1 8 8 C 1.46898 * 110.99915 * 207.26975 * 7 5 2 9 9 C 1.53000 * 109.47359 * 175.38292 * 8 7 5 10 10 C 1.50695 * 109.47631 * 180.02562 * 9 8 7 11 11 O 1.21302 * 119.99569 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00472 * 179.97438 * 10 9 8 13 13 C 1.37091 * 120.00348 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00184 * 28.56746 * 13 12 10 15 15 C 1.38950 * 120.00251 * 208.56785 * 13 12 10 16 16 N 1.31409 * 119.99889 * 354.89975 * 15 13 12 17 17 Si 1.86801 * 119.99944 * 174.89824 * 15 13 12 18 18 H 1.48493 * 109.47431 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46839 * 120.00181 * 17 15 13 20 20 H 1.48499 * 109.47168 * 240.00073 * 17 15 13 21 21 C 1.46502 * 119.99686 * 0.02562 * 12 10 9 22 22 C 1.47200 * 109.47420 * 84.15546 * 21 12 10 23 23 N 8.14455 * 94.60442 * 166.66784 * 2 1 3 24 24 C 1.50695 * 109.47451 * 184.45243 * 5 2 1 25 25 C 1.38245 * 119.97617 * 279.72879 * 24 5 2 26 26 C 1.38198 * 120.02705 * 179.76946 * 25 24 5 27 27 C 1.38455 * 119.97230 * 0.49749 * 26 25 24 28 28 F 1.35101 * 120.02587 * 179.76732 * 27 26 25 29 29 C 1.38458 * 119.95228 * 359.75512 * 27 26 25 30 30 C 1.38206 * 119.97130 * 359.97438 * 29 27 26 31 31 H 1.09003 * 109.46597 * 304.20274 * 1 2 3 32 32 H 1.08999 * 109.47466 * 64.20205 * 1 2 3 33 33 H 1.08998 * 109.46644 * 184.20505 * 1 2 3 34 34 H 1.09001 * 109.47263 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47297 * 300.00473 * 3 2 1 36 36 H 1.09007 * 109.46835 * 60.00374 * 3 2 1 37 37 H 1.09002 * 109.47051 * 299.99603 * 4 2 1 38 38 H 1.08996 * 109.47391 * 59.99902 * 4 2 1 39 39 H 1.09001 * 109.46946 * 179.97438 * 4 2 1 40 40 H 1.00900 * 111.00309 * 331.23052 * 7 5 2 41 41 H 1.09007 * 109.47005 * 55.38737 * 8 7 5 42 42 H 1.08991 * 109.47650 * 295.38722 * 8 7 5 43 43 H 1.09005 * 109.47155 * 300.00533 * 9 8 7 44 44 H 1.09007 * 109.46699 * 60.00257 * 9 8 7 45 45 H 0.96999 * 120.00093 * 180.02562 * 16 15 13 46 46 H 1.09005 * 109.46720 * 204.15586 * 21 12 10 47 47 H 1.09000 * 109.47259 * 324.15533 * 21 12 10 48 48 H 1.08002 * 119.98164 * 0.02562 * 25 24 5 49 49 H 1.07997 * 120.01481 * 180.25568 * 26 25 24 50 50 H 1.07998 * 120.01745 * 179.97438 * 29 27 26 51 51 H 1.07997 * 119.98434 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6131 -0.2556 2.1374 7 7 1.6402 -2.1338 1.1965 8 6 1.5107 -2.6950 2.5479 9 6 0.9834 -4.1283 2.4566 10 6 0.8500 -4.7039 3.8430 11 8 1.1470 -4.0333 4.8091 12 7 0.3997 -5.9632 4.0094 13 6 0.2788 -6.4869 5.2706 14 1 0.0867 -5.8350 6.1099 15 6 0.4034 -7.8565 5.4691 16 7 0.5369 -8.6603 4.4381 17 14 0.3813 -8.5551 7.2014 18 1 0.2202 -7.4491 8.1791 19 1 -0.7523 -9.5047 7.3377 20 1 1.6577 -9.2669 7.4644 21 6 0.0404 -6.7728 2.8425 22 6 1.2498 -7.4092 2.2956 23 7 2.1838 -7.8995 1.8720 24 6 3.5430 -0.6264 1.3055 25 6 4.3181 -1.4811 0.5440 26 6 5.6964 -1.3919 0.5912 27 6 6.3011 -0.4530 1.4096 28 9 7.6485 -0.3680 1.4602 29 6 5.5240 0.3990 2.1759 30 6 4.1457 0.3117 2.1227 31 1 -0.3632 0.5777 0.8500 32 1 -0.3634 0.4472 -0.9252 33 1 -0.3632 -1.0249 0.0754 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2073 -2.1392 39 1 3.1300 -0.7208 -1.2495 40 1 0.7846 -2.2482 0.6739 41 1 0.8154 -2.0883 3.1282 42 1 2.4855 -2.6969 3.0355 43 1 0.0085 -4.1265 1.9690 44 1 1.6787 -4.7350 1.8764 45 1 0.6235 -9.6165 4.5766 46 1 -0.6723 -7.5422 3.1397 47 1 -0.4099 -6.1347 2.0822 48 1 3.8461 -2.2160 -0.0913 49 1 6.3016 -2.0569 -0.0069 50 1 5.9946 1.1315 2.8149 51 1 3.5393 0.9764 2.7201 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058330393.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = -25.940302 kcal Electronic energy + Delta-G solvation = -32811.314109 eV Core-core repulsion = 28432.344549 eV Total energy + Delta-G solvation = -4378.969560 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.91812 -40.26206 -38.89256 -37.60526 -35.85556 -34.76536 -34.18649 -31.92523 -31.29331 -31.18595 -29.54856 -27.47976 -27.41731 -27.23642 -25.58824 -24.42065 -23.00566 -22.34143 -21.40439 -19.36452 -18.74134 -17.83842 -17.62291 -16.64532 -16.58580 -16.27877 -15.98669 -15.76449 -15.55274 -14.95001 -14.88827 -14.45829 -14.35561 -14.12547 -13.87627 -13.78342 -13.48530 -13.21098 -13.07163 -12.97618 -12.73697 -12.60289 -12.54005 -12.23850 -12.11849 -11.94052 -11.87602 -11.81685 -11.62693 -11.32402 -11.25100 -11.19733 -11.09659 -10.94424 -10.80218 -10.69885 -10.63099 -10.53295 -10.37067 -10.32422 -9.17600 -9.10248 -8.64634 -8.53622 -8.43832 -8.00337 -6.47327 -4.10990 1.09734 1.21827 3.10279 3.22250 3.27278 3.52248 3.58225 3.77961 4.00435 4.02919 4.16978 4.23107 4.45842 4.58626 4.68502 4.73519 4.84191 4.87726 4.94905 5.01992 5.17942 5.26131 5.27845 5.30080 5.38763 5.41143 5.44653 5.49471 5.55087 5.58345 5.69828 5.73733 5.75587 5.86093 5.86220 5.90200 5.93607 6.01564 6.08207 6.14480 6.20192 6.22006 6.24804 6.27181 6.38520 6.52746 6.70253 6.85640 7.07489 7.40478 7.43473 7.96130 8.28730 8.79047 8.99889 9.17412 9.72531 10.56644 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.002552 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.013311 B =10969.095434 C =11915.662638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.137 3.863 6 H 0.057 0.943 7 N -0.684 5.684 8 C 0.081 3.919 9 C -0.135 4.135 10 C 0.464 3.536 11 O -0.573 6.573 12 N -0.448 5.448 13 C -0.306 4.306 14 H 0.103 0.897 15 C 0.034 3.966 16 N -0.890 5.890 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.222 3.778 22 C 0.251 3.749 23 N -0.482 5.482 24 C -0.075 4.075 25 C -0.057 4.057 26 C -0.161 4.161 27 C 0.090 3.910 28 F -0.145 7.145 29 C -0.158 4.158 30 C -0.088 4.088 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.341 0.659 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.273 0.727 46 H 0.137 0.863 47 H 0.076 0.924 48 H 0.143 0.857 49 H 0.131 0.869 50 H 0.131 0.869 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 17.682 -11.838 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.200 4.200 5 C 0.027 3.973 6 H 0.075 0.925 7 N -0.317 5.317 8 C -0.048 4.048 9 C -0.176 4.176 10 C 0.252 3.748 11 O -0.455 6.455 12 N -0.169 5.169 13 C -0.434 4.434 14 H 0.121 0.879 15 C -0.168 4.168 16 N -0.530 5.530 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.207 1.207 21 C 0.094 3.906 22 C -0.067 4.067 23 N -0.162 5.162 24 C -0.075 4.075 25 C -0.075 4.075 26 C -0.179 4.179 27 C 0.071 3.929 28 F -0.124 7.124 29 C -0.177 4.177 30 C -0.107 4.107 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.162 0.838 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.155 0.845 47 H 0.094 0.906 48 H 0.161 0.839 49 H 0.149 0.851 50 H 0.149 0.851 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.526 16.844 -12.055 20.770 hybrid contribution -0.775 -0.178 1.382 1.594 sum 0.752 16.666 -10.673 19.805 Atomic orbital electron populations 1.21954 0.94353 1.01994 1.02116 1.20665 0.95320 0.95627 0.95045 1.21896 1.01586 0.94835 1.01604 1.21963 1.01789 1.00692 0.95589 1.20405 0.90937 0.88841 0.97162 0.92494 1.60524 1.39188 1.15177 1.16824 1.21668 1.01610 0.93553 0.87985 1.21572 1.02117 0.96990 0.96920 1.20184 0.80920 0.83580 0.90158 1.90553 1.52668 1.60096 1.42184 1.43549 1.57036 1.10684 1.05677 1.19695 1.47403 0.91491 0.84788 0.87920 1.25390 0.95682 0.96265 0.99473 1.69661 1.48954 1.04844 1.29538 0.85786 0.77828 0.78852 0.81815 1.19177 1.20648 1.20714 1.18832 0.89545 0.95073 0.87114 1.29383 0.94665 0.92080 0.90568 1.80937 1.11333 1.11039 1.12931 1.19816 0.95443 0.95665 0.96626 1.20985 0.91549 0.97431 0.97544 1.21216 0.96075 0.99555 1.01094 1.17752 0.76733 0.98668 0.99725 1.91479 1.29761 1.95711 1.95454 1.21027 0.94245 1.00973 1.01456 1.20875 0.93542 0.98235 0.98005 0.92562 0.92140 0.92317 0.92103 0.92594 0.92733 0.91505 0.93202 0.91921 0.83760 0.94336 0.90385 0.90246 0.89430 0.91656 0.84521 0.90631 0.83950 0.85059 0.85139 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.37 37.16 0.31 -0.74 16 2 C -0.07 -0.52 0.55 -154.51 -0.09 -0.61 16 3 C -0.14 -1.05 7.94 37.16 0.30 -0.76 16 4 C -0.14 -1.13 7.39 37.16 0.27 -0.86 16 5 C 0.14 1.35 1.61 -68.87 -0.11 1.24 16 6 H 0.06 0.60 7.55 -51.93 -0.39 0.21 16 7 N -0.68 -7.54 4.83 -107.96 -0.52 -8.06 16 8 C 0.08 1.18 4.83 -3.82 -0.02 1.16 16 9 C -0.14 -2.16 4.52 -27.89 -0.13 -2.29 16 10 C 0.46 10.09 7.56 -10.99 -0.08 10.00 16 11 O -0.57 -14.50 15.74 5.54 0.09 -14.41 16 12 N -0.45 -10.20 2.60 -117.93 -0.31 -10.50 16 13 C -0.31 -7.78 9.17 -14.94 -0.14 -7.92 16 14 H 0.10 2.73 7.50 -52.49 -0.39 2.34 16 15 C 0.03 0.85 5.35 -17.47 -0.09 0.75 16 16 N -0.89 -22.12 8.80 55.50 0.49 -21.63 16 17 Si 0.93 20.07 29.56 -169.99 -5.02 15.04 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 C 0.22 4.30 4.91 -6.83 -0.03 4.26 16 22 C 0.25 5.48 12.88 -20.74 -0.27 5.21 16 23 N -0.48 -11.41 18.54 42.18 0.78 -10.63 16 24 C -0.07 -0.81 3.63 -104.62 -0.38 -1.19 16 25 C -0.06 -0.64 7.28 -39.59 -0.29 -0.93 16 26 C -0.16 -1.87 10.03 -39.52 -0.40 -2.26 16 27 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 28 F -0.15 -1.88 17.27 2.25 0.04 -1.84 16 29 C -0.16 -1.73 10.03 -39.51 -0.40 -2.12 16 30 C -0.09 -0.92 8.69 -39.59 -0.34 -1.26 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 6.29 -51.93 -0.33 0.09 16 34 H 0.06 0.50 6.58 -51.93 -0.34 0.16 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 37 H 0.07 0.55 7.14 -51.93 -0.37 0.17 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.54 5.60 -51.93 -0.29 0.25 16 40 H 0.34 3.25 5.81 -39.29 -0.23 3.02 16 41 H 0.04 0.58 7.90 -51.93 -0.41 0.17 16 42 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 43 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 44 H 0.09 1.45 7.51 -51.93 -0.39 1.06 16 45 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 46 H 0.14 2.77 6.43 -51.93 -0.33 2.44 16 47 H 0.08 1.10 6.68 -51.93 -0.35 0.76 16 48 H 0.14 1.56 6.82 -52.49 -0.36 1.20 16 49 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 50 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 51 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 LS Contribution 411.16 15.07 6.20 6.20 Total: -1.00 -30.15 411.16 -7.93 -38.08 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.50 Total: 5.24 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.17 Total: 2.52 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.44 Total: -50.82 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.09 Total: -14.41 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.15 -7.93 -38.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058330393.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.136 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds