Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46912 * 90.00229 * 7 6 5 9 9 N 1.46901 * 109.46769 * 180.02562 * 8 7 6 10 10 C 1.46959 * 111.00176 * 293.79533 * 9 8 7 11 11 C 1.53049 * 109.36513 * 176.81510 * 10 9 8 12 12 N 1.46954 * 109.36453 * 58.40289 * 11 10 9 13 13 C 1.46901 * 110.99682 * 176.81262 * 12 11 10 14 14 C 1.50699 * 109.47007 * 293.79781 * 13 12 11 15 15 O 1.21284 * 120.00265 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00031 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00045 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47186 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99911 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99779 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99603 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00470 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46853 * 89.99489 * 22 20 18 24 24 H 1.48494 * 109.47336 * 209.99588 * 22 20 18 25 25 H 1.48498 * 109.46967 * 329.99977 * 22 20 18 26 26 C 1.46949 * 110.88128 * 300.67601 * 12 11 10 27 27 C 1.46962 * 110.99903 * 169.99944 * 9 8 7 28 28 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 29 29 C 1.38141 * 120.05541 * 359.45293 * 28 6 5 30 30 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 31 31 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 32 32 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 34 34 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 36 36 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 37 37 H 1.09001 * 109.47194 * 299.99742 * 8 7 6 38 38 H 1.08992 * 109.47399 * 59.99914 * 8 7 6 39 39 H 1.09005 * 109.48769 * 296.78233 * 10 9 8 40 40 H 1.09003 * 109.48614 * 56.84428 * 10 9 8 41 41 H 1.08997 * 109.48844 * 298.43131 * 11 10 9 42 42 H 1.09001 * 109.48284 * 178.37186 * 11 10 9 43 43 H 1.08996 * 109.47230 * 53.79604 * 13 12 11 44 44 H 1.08999 * 109.47097 * 173.80176 * 13 12 11 45 45 H 0.96996 * 119.99646 * 359.97438 * 16 14 13 46 46 H 1.09006 * 109.46982 * 299.99513 * 17 16 14 47 47 H 1.08998 * 109.47298 * 59.99269 * 17 16 14 48 48 H 0.97006 * 120.00099 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.49424 * 299.35616 * 26 12 11 50 50 H 1.08998 * 109.50952 * 179.30451 * 26 12 11 51 51 H 1.09002 * 109.48711 * 303.15266 * 27 9 8 52 52 H 1.08997 * 109.49207 * 63.21752 * 27 9 8 53 53 H 1.07999 * 119.97019 * 179.70188 * 28 6 5 54 54 H 1.07998 * 120.03323 * 180.24999 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2170 5.4744 -1.4394 9 7 4.8845 6.7830 -1.4382 10 6 4.0059 7.8219 -0.8829 11 6 4.7639 9.1503 -0.8256 12 7 5.2146 9.5127 -2.1766 13 6 5.8820 10.8213 -2.1754 14 6 4.8813 11.8953 -1.8347 15 8 3.7257 11.5999 -1.6149 16 7 5.2702 13.1844 -1.7751 17 6 4.2975 14.2285 -1.4433 18 6 4.9822 15.5710 -1.4422 19 1 6.0365 15.6396 -1.6659 20 6 4.2625 16.7116 -1.1557 21 7 4.8602 17.8831 -1.1543 22 14 2.4390 16.5928 -0.7682 23 1 2.2547 16.4084 0.6937 24 1 1.7591 17.8406 -1.1993 25 1 1.8538 15.4351 -1.4908 26 6 6.0932 8.4740 -2.7319 27 6 5.3352 7.1456 -2.7892 28 6 1.9211 3.6047 0.0080 29 6 1.2915 2.3751 0.0013 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 4.0209 0.3799 -0.0005 34 1 5.1345 2.5749 -0.0008 35 1 4.9444 4.9376 0.5161 36 1 3.3584 5.7457 0.5177 37 1 4.8448 4.7472 -1.9543 38 1 3.2589 5.5553 -1.9526 39 1 3.1266 7.9320 -1.5176 40 1 3.6956 7.5366 0.1224 41 1 5.6280 9.0479 -0.1692 42 1 4.1048 9.9287 -0.4410 43 1 6.6811 10.8210 -1.4341 44 1 6.3019 11.0159 -3.1623 45 1 6.1943 13.4208 -1.9512 46 1 3.4978 14.2287 -2.1841 47 1 3.8782 14.0340 -0.4562 48 1 4.3540 18.6856 -0.9524 49 1 6.9725 8.3638 -2.0972 50 1 6.4038 8.7591 -3.7370 51 1 5.9942 6.3671 -3.1738 52 1 4.4711 7.2480 -3.4456 53 1 1.3343 4.5113 0.0141 54 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058365391.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = -58.265887 kcal Electronic energy + Delta-G solvation = -31170.854322 eV Core-core repulsion = 26913.943325 eV Total energy + Delta-G solvation = -4256.910997 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.14822 -40.93260 -39.80304 -38.67061 -36.69402 -35.99799 -34.39555 -33.49863 -32.02655 -31.86035 -30.94529 -29.74210 -28.58613 -27.51346 -25.62010 -24.66771 -23.84905 -23.59993 -23.10151 -21.58318 -21.44546 -20.73732 -19.13207 -19.09677 -17.70216 -17.61232 -17.26001 -16.88957 -16.68256 -16.64953 -16.30813 -16.04772 -15.95187 -15.68467 -15.49295 -15.25925 -15.17635 -14.97917 -14.65528 -14.52369 -14.39179 -14.25958 -14.05652 -13.81285 -13.67673 -13.14460 -13.00654 -12.92430 -12.84641 -12.73636 -12.63779 -12.36431 -12.19226 -12.10616 -11.94002 -11.90149 -11.80892 -11.65725 -11.63873 -11.42789 -10.91550 -10.65059 -9.95956 -9.88550 -9.40984 -9.21263 -9.03641 -8.39928 -6.46579 0.38811 0.42719 1.32004 1.34552 1.47079 1.77997 2.27494 2.32697 2.38117 2.72136 2.94584 2.95696 3.06488 3.81516 3.86554 3.93052 3.95343 3.99861 4.11059 4.16457 4.22936 4.27115 4.33255 4.35753 4.37351 4.43628 4.45055 4.51560 4.55525 4.59196 4.62104 4.68794 4.70184 4.77174 4.80344 4.87834 4.94070 4.96580 5.02562 5.04585 5.10027 5.12719 5.21426 5.27419 5.34088 5.39895 5.56458 5.71518 5.83431 5.86534 5.97964 6.09946 6.16478 6.19154 6.43807 6.54885 6.90114 7.16939 7.47413 8.74810 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.001418 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.346408 B =19735.411114 C =20906.151434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.105 3.895 4 C -0.163 4.163 5 C -0.076 4.076 6 C -0.122 4.122 7 C -0.066 4.066 8 C 0.067 3.933 9 N -0.540 5.540 10 C 0.066 3.934 11 C 0.057 3.943 12 N -0.542 5.542 13 C 0.049 3.951 14 C 0.499 3.501 15 O -0.580 6.580 16 N -0.708 5.708 17 C 0.235 3.765 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.027 3.973 21 N -0.931 5.931 22 Si 0.937 3.063 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.262 1.262 26 C 0.059 3.941 27 C 0.059 3.941 28 C -0.086 4.086 29 C -0.212 4.212 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.408 0.592 46 H 0.010 0.990 47 H 0.009 0.991 48 H 0.272 0.728 49 H 0.050 0.950 50 H 0.096 0.904 51 H 0.102 0.898 52 H 0.029 0.971 53 H 0.130 0.870 54 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 -37.257 0.414 37.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.060 3.940 4 C -0.181 4.181 5 C -0.094 4.094 6 C -0.123 4.123 7 C -0.103 4.103 8 C -0.060 4.060 9 N -0.265 5.265 10 C -0.062 4.062 11 C -0.071 4.071 12 N -0.268 5.268 13 C -0.082 4.082 14 C 0.286 3.714 15 O -0.460 6.460 16 N -0.358 5.358 17 C 0.111 3.889 18 C -0.584 4.584 19 H 0.078 0.922 20 C -0.173 4.173 21 N -0.570 5.570 22 Si 0.760 3.240 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.186 1.186 26 C -0.068 4.068 27 C -0.069 4.069 28 C -0.104 4.104 29 C -0.230 4.230 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.146 0.854 45 H 0.244 0.756 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.115 0.885 51 H 0.120 0.880 52 H 0.048 0.952 53 H 0.148 0.852 54 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.126 -37.451 0.586 37.516 hybrid contribution -0.855 0.965 0.143 1.298 sum -2.981 -36.486 0.729 36.615 Atomic orbital electron populations 1.23301 0.76707 1.05448 1.02046 1.86036 1.23246 1.27079 1.88829 1.19294 0.92934 0.84527 0.97221 1.20673 0.91511 0.99390 1.06538 1.21103 1.00846 0.90487 0.96945 1.19874 0.93558 0.95481 1.03362 1.20456 1.00962 0.92435 0.96464 1.22054 0.97071 0.90087 0.96821 1.62246 1.39601 1.02284 1.22380 1.22064 0.93628 0.90277 1.00260 1.22200 0.99023 0.96938 0.88987 1.61761 1.40283 1.01377 1.23337 1.21921 0.93736 0.87587 1.04966 1.21284 0.89734 0.83854 0.76547 1.90601 1.21520 1.82632 1.51274 1.46023 1.13938 1.06113 1.69763 1.19039 0.89341 0.85974 0.94594 1.21313 0.97409 0.90514 1.49165 0.92158 1.25578 1.02858 0.94705 0.94146 1.69983 1.38537 0.98984 1.49503 0.85871 0.80210 0.78318 0.79563 1.19023 1.19826 1.18646 1.22265 0.93823 0.89927 1.00806 1.22190 0.98976 0.96828 0.88887 1.21071 0.94450 0.97461 0.97461 1.21418 1.00873 0.92137 1.08619 0.91960 0.91998 0.86403 0.84414 0.83463 0.89697 0.91350 0.89626 0.95622 0.95794 0.89286 0.94075 0.91385 0.89860 0.85447 0.75607 0.97236 0.97271 0.91876 0.93137 0.88540 0.87974 0.95243 0.85180 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.39 10.50 -92.39 -0.97 -6.36 16 3 C 0.11 1.76 6.69 22.51 0.15 1.91 16 4 C -0.16 -2.50 9.99 22.37 0.22 -2.27 16 5 C -0.08 -1.04 9.69 22.25 0.22 -0.83 16 6 C -0.12 -1.81 5.14 -19.85 -0.10 -1.91 16 7 C -0.07 -0.92 5.28 29.85 0.16 -0.77 16 8 C 0.07 1.03 4.94 86.30 0.43 1.46 16 9 N -0.54 -9.97 4.71 -895.69 -4.22 -14.19 16 10 C 0.07 1.49 5.41 86.31 0.47 1.96 16 11 C 0.06 1.51 5.26 86.31 0.45 1.96 16 12 N -0.54 -13.86 4.45 -900.31 -4.00 -17.87 16 13 C 0.05 1.22 5.45 85.56 0.47 1.68 16 14 C 0.50 18.26 7.53 87.66 0.66 18.92 16 15 O -0.58 -25.98 14.34 -3.04 -0.04 -26.02 16 16 N -0.71 -27.83 5.55 -466.77 -2.59 -30.42 16 17 C 0.23 11.51 4.50 85.63 0.38 11.90 16 18 C -0.55 -30.12 9.83 25.60 0.25 -29.86 16 19 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 20 C 0.03 1.55 5.47 84.65 0.46 2.01 16 21 N -0.93 -55.62 13.96 21.45 0.30 -55.32 16 22 Si 0.94 44.30 27.47 68.60 1.88 46.19 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.26 -12.37 6.54 99.48 0.65 -11.72 16 26 C 0.06 1.08 5.61 86.31 0.48 1.56 16 27 C 0.06 1.02 5.61 86.31 0.48 1.51 16 28 C -0.09 -1.32 9.69 22.25 0.22 -1.11 16 29 C -0.21 -3.20 9.04 22.37 0.20 -2.99 16 30 H 0.06 0.42 7.66 -2.39 -0.02 0.40 16 31 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 32 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 36 H 0.07 1.03 6.44 -2.39 -0.02 1.01 16 37 H 0.09 1.14 8.03 -2.39 -0.02 1.12 16 38 H 0.03 0.45 8.12 -2.39 -0.02 0.43 16 39 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.09 1.80 6.34 -2.39 -0.02 1.78 16 41 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 42 H 0.07 2.28 5.85 -2.39 -0.01 2.27 16 43 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 44 H 0.13 2.53 8.03 -2.39 -0.02 2.52 16 45 H 0.41 13.85 8.32 -92.71 -0.77 13.08 16 46 H 0.01 0.51 7.20 -2.38 -0.02 0.49 16 47 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 48 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 49 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 51 H 0.10 1.29 8.07 -2.39 -0.02 1.27 16 52 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 53 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 54 H 0.14 1.58 6.30 -2.91 -0.02 1.56 16 Total: -1.00 -72.32 427.53 -2.86 -75.18 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.06 Total: 22.42 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 6.72 Total: 6.40 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -10.51 Total: -117.79 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.01 Total: -32.39 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -72.32 -2.86 -75.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058365391.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.913 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds