Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99458 * 2 1 4 4 H 1.48493 * 109.46928 * 269.99654 * 3 2 1 5 5 H 1.48494 * 109.47365 * 30.00149 * 3 2 1 6 6 H 1.48503 * 109.46819 * 150.00322 * 3 2 1 7 7 C 1.37871 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00004 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99755 * 89.99998 * 10 9 7 12 12 C 1.50703 * 109.47289 * 270.00096 * 11 10 9 13 13 C 1.34508 * 125.78448 * 90.00098 * 12 11 10 14 14 C 1.41394 * 106.83701 * 179.97438 * 13 12 11 15 15 C 1.34513 * 106.83758 * 359.97438 * 14 13 12 16 16 O 1.34295 * 125.78633 * 269.69055 * 12 11 10 17 17 C 1.34774 * 120.00377 * 270.00187 * 10 9 7 18 18 O 1.21289 * 120.00200 * 179.97438 * 17 10 9 19 19 C 1.50696 * 120.00038 * 0.02562 * 17 10 9 20 20 C 1.52994 * 109.47431 * 179.97438 * 19 17 10 21 21 C 1.53006 * 109.47606 * 179.97438 * 20 19 17 22 22 O 1.42897 * 109.47282 * 179.97438 * 21 20 19 23 23 C 1.35954 * 116.99748 * 180.02562 * 22 21 20 24 24 C 1.38660 * 120.06533 * 0.02562 * 23 22 21 25 25 C 1.38177 * 119.97336 * 179.97438 * 24 23 22 26 26 C 1.38268 * 120.09267 * 0.02562 * 25 24 23 27 27 C 1.38255 * 120.12434 * 0.02562 * 26 25 24 28 28 C 1.38335 * 120.02956 * 359.69732 * 27 26 25 29 29 F 1.35106 * 120.04479 * 180.28054 * 28 27 26 30 30 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.46821 * 60.00286 * 9 7 2 32 32 H 1.08995 * 109.47308 * 299.99902 * 9 7 2 33 33 H 1.09001 * 109.47060 * 30.00546 * 11 10 9 34 34 H 1.09004 * 109.47073 * 150.00035 * 11 10 9 35 35 H 1.07995 * 126.58620 * 0.03388 * 13 12 11 36 36 H 1.07997 * 126.57684 * 179.97438 * 14 13 12 37 37 H 1.07998 * 125.78636 * 180.02562 * 15 14 13 38 38 H 1.09003 * 109.47424 * 300.00151 * 19 17 10 39 39 H 1.09003 * 109.47504 * 60.00089 * 19 17 10 40 40 H 1.09000 * 109.47405 * 300.00123 * 20 19 17 41 41 H 1.08999 * 109.47194 * 59.99898 * 20 19 17 42 42 H 1.09000 * 109.47023 * 300.00583 * 21 20 19 43 43 H 1.08999 * 109.46737 * 60.00405 * 21 20 19 44 44 H 1.08001 * 120.01334 * 359.95873 * 24 23 22 45 45 H 1.07998 * 119.95445 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.93342 * 179.97438 * 26 25 24 47 47 H 1.08000 * 119.97835 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.6801 -4.1687 1.2702 12 6 3.9236 -3.4361 1.7040 13 6 3.9588 -2.3352 2.4761 14 6 5.3205 -1.9877 2.6319 15 6 6.0358 -2.8974 1.9461 16 8 5.1846 -3.7750 1.3900 17 6 2.6403 -4.1253 -1.1658 18 8 3.4288 -5.0469 -1.1659 19 6 2.1501 -3.5529 -2.4708 20 6 2.7958 -4.3087 -3.6338 21 6 2.2976 -3.7279 -4.9588 22 8 2.9012 -4.4335 -6.0450 23 6 2.5630 -4.0387 -7.3013 24 6 1.6698 -2.9941 -7.4843 25 6 1.3279 -2.5940 -8.7620 26 6 1.8748 -3.2343 -9.8586 27 6 2.7650 -4.2771 -9.6807 28 6 3.1153 -4.6780 -8.4039 29 9 3.9896 -5.6932 -8.2296 30 1 -0.4851 0.8400 -0.0004 31 1 0.6242 -2.5575 -0.8880 32 1 0.6248 -2.5563 0.8919 33 1 1.9073 -4.0546 2.0303 34 1 2.9085 -5.2266 1.1401 35 1 3.1101 -1.8169 2.8971 36 1 5.7113 -1.1523 3.1937 37 1 7.1121 -2.9205 1.8605 38 1 1.0663 -3.6545 -2.5279 39 1 2.4197 -2.4983 -2.5291 40 1 3.8795 -4.2067 -3.5765 41 1 2.5266 -5.3633 -3.5758 42 1 1.2140 -3.8303 -5.0159 43 1 2.5665 -2.6732 -5.0171 44 1 1.2413 -2.4935 -6.6287 45 1 0.6325 -1.7801 -8.9042 46 1 1.6055 -2.9198 -10.8561 47 1 3.1912 -4.7753 -10.5389 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058367311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -82.147739 kcal Electronic energy + Delta-G solvation = -31572.171006 eV Core-core repulsion = 27022.638263 eV Total energy + Delta-G solvation = -4549.532743 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.85675 -41.97834 -40.14411 -39.18380 -37.65552 -35.30372 -33.67180 -32.70846 -32.37542 -30.90215 -30.50224 -29.86637 -27.41373 -27.28951 -25.12245 -23.39084 -22.90573 -22.56181 -21.30558 -21.16125 -20.06351 -18.77853 -18.19415 -17.23871 -17.03773 -16.77594 -16.64880 -16.47528 -16.20731 -15.60401 -15.50825 -15.20491 -14.93572 -14.76571 -14.57833 -14.42485 -14.10846 -13.90058 -13.22932 -13.01236 -12.76525 -12.46381 -12.39716 -12.27182 -12.18303 -12.15004 -12.09447 -11.85332 -11.56396 -11.49217 -11.26054 -11.16923 -11.01977 -10.94747 -10.76447 -10.46767 -10.25522 -9.84097 -9.32197 -9.20498 -9.17011 -8.62506 -8.36186 -8.07444 -7.79585 -6.24153 -4.29774 0.90289 1.05787 2.21215 2.91127 3.11565 3.17872 3.26181 3.27730 3.32674 3.36972 3.62973 3.96766 4.09242 4.30084 4.50557 4.61613 4.92696 4.98314 4.98618 5.01575 5.09885 5.21214 5.21481 5.24672 5.40735 5.53822 5.55767 5.62169 5.66551 5.76179 5.83143 5.83888 5.94567 5.96603 6.06453 6.15851 6.32196 6.34346 6.40797 6.50731 6.52552 6.59027 6.64256 7.04540 7.07597 7.20736 7.39483 7.70674 7.72461 7.99046 8.19664 8.74275 8.91259 9.38187 10.82776 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.002477 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.922123 B =11302.764304 C =12998.886985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.236 3.764 10 N -0.595 5.595 11 C 0.200 3.800 12 C -0.017 4.017 13 C -0.179 4.179 14 C -0.217 4.217 15 C -0.056 4.056 16 O -0.170 6.170 17 C 0.520 3.480 18 O -0.564 6.564 19 C -0.131 4.131 20 C -0.100 4.100 21 C 0.058 3.942 22 O -0.306 6.306 23 C 0.105 3.895 24 C -0.184 4.184 25 C -0.088 4.088 26 C -0.136 4.136 27 C -0.118 4.118 28 C 0.063 3.937 29 F -0.133 7.133 30 H 0.265 0.735 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.193 0.807 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.141 0.859 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -4.642 -10.708 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.116 3.884 10 N -0.325 5.325 11 C 0.077 3.923 12 C -0.069 4.069 13 C -0.199 4.199 14 C -0.236 4.236 15 C -0.125 4.125 16 O -0.065 6.065 17 C 0.309 3.691 18 O -0.444 6.444 19 C -0.170 4.170 20 C -0.138 4.138 21 C -0.017 4.017 22 O -0.219 6.219 23 C 0.058 3.942 24 C -0.202 4.202 25 C -0.107 4.107 26 C -0.154 4.154 27 C -0.137 4.137 28 C 0.043 3.957 29 F -0.112 7.112 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.210 0.790 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.159 0.841 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.294 -5.440 -10.785 12.295 hybrid contribution 0.462 1.663 0.296 1.751 sum 2.756 -3.777 -10.489 11.484 Atomic orbital electron populations 1.69910 1.05918 1.27252 1.50044 1.24886 0.94748 0.99093 0.94864 0.86601 0.80104 0.83200 0.78320 1.20597 1.21132 1.19643 1.21482 0.93720 0.90156 1.51470 0.91898 1.19531 0.87270 0.82711 0.98862 1.48324 1.45012 1.35532 1.03675 1.19629 0.88974 0.96661 0.87068 1.22909 0.84150 0.99224 1.00594 1.21570 0.97274 0.97598 1.03480 1.21780 0.93950 1.02212 1.05667 1.23857 0.95622 0.92473 1.00508 1.84060 1.15928 1.46870 1.59679 1.20395 0.80648 0.82273 0.85786 1.90639 1.35524 1.30345 1.87906 1.21467 1.01913 1.02356 0.91288 1.21244 1.02176 1.00767 0.89659 1.23011 0.97527 0.96214 0.84911 1.86147 1.66146 1.58124 1.11470 1.19089 0.95560 0.94681 0.84859 1.21306 1.00861 0.98658 0.99418 1.21056 0.98812 0.99209 0.91591 1.20913 0.98402 0.96669 0.99433 1.21008 0.99338 0.98604 0.94772 1.17044 0.95633 0.90926 0.92111 1.91507 1.66578 1.56937 1.96168 0.92578 0.94081 0.94491 0.87857 0.89485 0.83387 0.84213 0.79012 0.88842 0.87450 0.90265 0.90388 0.91501 0.91354 0.84087 0.85006 0.84983 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.25 13.29 55.43 0.74 -22.51 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.02 29.54 -169.99 -5.02 14.99 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -12.87 9.04 -34.44 -0.31 -13.18 16 8 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16 9 C 0.24 5.13 5.01 -5.19 -0.03 5.11 16 10 N -0.59 -11.83 2.44 -176.43 -0.43 -12.26 16 11 C 0.20 3.62 5.98 -5.19 -0.03 3.59 16 12 C -0.02 -0.33 6.90 -35.63 -0.25 -0.58 16 13 C -0.18 -3.36 10.40 -39.70 -0.41 -3.77 16 14 C -0.22 -3.66 10.91 -39.70 -0.43 -4.10 16 15 C -0.06 -0.92 12.09 29.42 0.36 -0.56 16 16 O -0.17 -3.31 10.65 5.72 0.06 -3.25 16 17 C 0.52 10.34 7.67 -10.99 -0.08 10.25 16 18 O -0.56 -12.43 15.56 5.55 0.09 -12.35 16 19 C -0.13 -2.17 4.25 -27.89 -0.12 -2.29 16 20 C -0.10 -1.53 4.87 -26.73 -0.13 -1.66 16 21 C 0.06 0.76 4.74 37.16 0.18 0.93 16 22 O -0.31 -4.51 10.00 -19.60 -0.20 -4.71 16 23 C 0.11 1.38 6.69 -39.18 -0.26 1.12 16 24 C -0.18 -1.99 9.04 -39.45 -0.36 -2.34 16 25 C -0.09 -0.78 10.04 -39.59 -0.40 -1.18 16 26 C -0.14 -1.12 10.04 -39.56 -0.40 -1.52 16 27 C -0.12 -1.14 10.02 -39.54 -0.40 -1.53 16 28 C 0.06 0.80 7.31 -39.30 -0.29 0.51 16 29 F -0.13 -1.90 17.11 2.25 0.04 -1.87 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.04 0.90 6.44 -51.93 -0.33 0.57 16 32 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 33 H 0.10 1.62 7.89 -51.93 -0.41 1.21 16 34 H 0.09 1.53 7.42 -51.93 -0.39 1.14 16 35 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 36 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 37 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.09 1.41 7.40 -51.93 -0.38 1.03 16 39 H 0.11 1.89 8.00 -51.93 -0.42 1.47 16 40 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 41 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.07 0.76 7.66 -51.93 -0.40 0.36 16 43 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 44 H 0.14 1.36 6.30 -52.49 -0.33 1.03 16 45 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -30.66 407.56 -8.42 -39.08 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.38 Total: 6.34 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.46 Total: -9.62 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.31 Total: -34.77 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.05 Total: -20.31 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.66 -8.42 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058367311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.068 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds