Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99458 * 2 1 4 4 H 1.48493 * 109.46928 * 269.99654 * 3 2 1 5 5 H 1.48494 * 109.47365 * 30.00149 * 3 2 1 6 6 H 1.48503 * 109.46819 * 150.00322 * 3 2 1 7 7 C 1.37871 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00004 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99755 * 89.99998 * 10 9 7 12 12 C 1.50703 * 109.47289 * 270.00096 * 11 10 9 13 13 C 1.34508 * 125.78448 * 90.00098 * 12 11 10 14 14 C 1.41394 * 106.83701 * 179.97438 * 13 12 11 15 15 C 1.34513 * 106.83758 * 359.97438 * 14 13 12 16 16 O 1.34295 * 125.78633 * 269.69055 * 12 11 10 17 17 C 1.34774 * 120.00377 * 270.00187 * 10 9 7 18 18 O 1.21289 * 120.00200 * 179.97438 * 17 10 9 19 19 C 1.50696 * 120.00038 * 0.02562 * 17 10 9 20 20 C 1.52994 * 109.47431 * 179.97438 * 19 17 10 21 21 C 1.53006 * 109.47606 * 179.97438 * 20 19 17 22 22 O 1.42897 * 109.47282 * 179.97438 * 21 20 19 23 23 C 1.35954 * 116.99748 * 180.02562 * 22 21 20 24 24 C 1.38660 * 120.06533 * 0.02562 * 23 22 21 25 25 C 1.38177 * 119.97336 * 179.97438 * 24 23 22 26 26 C 1.38268 * 120.09267 * 0.02562 * 25 24 23 27 27 C 1.38255 * 120.12434 * 0.02562 * 26 25 24 28 28 C 1.38335 * 120.02956 * 359.69732 * 27 26 25 29 29 F 1.35106 * 120.04479 * 180.28054 * 28 27 26 30 30 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.46821 * 60.00286 * 9 7 2 32 32 H 1.08995 * 109.47308 * 299.99902 * 9 7 2 33 33 H 1.09001 * 109.47060 * 30.00546 * 11 10 9 34 34 H 1.09004 * 109.47073 * 150.00035 * 11 10 9 35 35 H 1.07995 * 126.58620 * 0.03388 * 13 12 11 36 36 H 1.07997 * 126.57684 * 179.97438 * 14 13 12 37 37 H 1.07998 * 125.78636 * 180.02562 * 15 14 13 38 38 H 1.09003 * 109.47424 * 300.00151 * 19 17 10 39 39 H 1.09003 * 109.47504 * 60.00089 * 19 17 10 40 40 H 1.09000 * 109.47405 * 300.00123 * 20 19 17 41 41 H 1.08999 * 109.47194 * 59.99898 * 20 19 17 42 42 H 1.09000 * 109.47023 * 300.00583 * 21 20 19 43 43 H 1.08999 * 109.46737 * 60.00405 * 21 20 19 44 44 H 1.08001 * 120.01334 * 359.95873 * 24 23 22 45 45 H 1.07998 * 119.95445 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.93342 * 179.97438 * 26 25 24 47 47 H 1.08000 * 119.97835 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.6801 -4.1687 1.2702 12 6 3.9236 -3.4361 1.7040 13 6 3.9588 -2.3352 2.4761 14 6 5.3205 -1.9877 2.6319 15 6 6.0358 -2.8974 1.9461 16 8 5.1846 -3.7750 1.3900 17 6 2.6403 -4.1253 -1.1658 18 8 3.4288 -5.0469 -1.1659 19 6 2.1501 -3.5529 -2.4708 20 6 2.7958 -4.3087 -3.6338 21 6 2.2976 -3.7279 -4.9588 22 8 2.9012 -4.4335 -6.0450 23 6 2.5630 -4.0387 -7.3013 24 6 1.6698 -2.9941 -7.4843 25 6 1.3279 -2.5940 -8.7620 26 6 1.8748 -3.2343 -9.8586 27 6 2.7650 -4.2771 -9.6807 28 6 3.1153 -4.6780 -8.4039 29 9 3.9896 -5.6932 -8.2296 30 1 -0.4851 0.8400 -0.0004 31 1 0.6242 -2.5575 -0.8880 32 1 0.6248 -2.5563 0.8919 33 1 1.9073 -4.0546 2.0303 34 1 2.9085 -5.2266 1.1401 35 1 3.1101 -1.8169 2.8971 36 1 5.7113 -1.1523 3.1937 37 1 7.1121 -2.9205 1.8605 38 1 1.0663 -3.6545 -2.5279 39 1 2.4197 -2.4983 -2.5291 40 1 3.8795 -4.2067 -3.5765 41 1 2.5266 -5.3633 -3.5758 42 1 1.2140 -3.8303 -5.0159 43 1 2.5665 -2.6732 -5.0171 44 1 1.2413 -2.4935 -6.6287 45 1 0.6325 -1.7801 -8.9042 46 1 1.6055 -2.9198 -10.8561 47 1 3.1912 -4.7753 -10.5389 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058367311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = -97.011669 kcal Electronic energy + Delta-G solvation = -31572.815554 eV Core-core repulsion = 27022.638263 eV Total energy + Delta-G solvation = -4550.177291 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.83529 -43.38610 -41.10343 -40.70458 -38.53120 -36.95098 -35.00858 -34.51962 -33.80182 -31.88220 -31.66018 -30.81355 -29.16693 -28.54497 -26.47822 -24.92909 -24.13811 -23.40730 -22.57376 -22.40484 -21.45050 -20.09477 -19.33559 -18.72885 -18.23530 -18.21680 -17.84170 -17.56211 -17.46856 -17.14364 -16.66670 -16.49974 -16.29677 -16.09141 -15.83905 -15.42426 -15.34640 -14.99481 -14.59706 -14.28013 -14.12280 -13.91571 -13.77899 -13.66886 -13.53310 -13.43746 -13.18653 -13.11538 -12.93272 -12.77041 -12.68584 -12.49156 -12.42061 -12.31815 -12.08303 -11.91432 -11.71788 -11.62948 -10.86900 -10.72671 -10.53092 -9.94510 -9.67758 -9.28028 -9.22951 -8.16609 -6.26258 0.12715 0.26971 0.81201 1.39212 1.44183 1.51627 1.64709 1.78773 1.95266 2.26930 2.39593 2.55535 2.61143 3.15392 3.23868 3.60327 3.78550 3.86254 3.88041 3.92736 4.04504 4.10675 4.19920 4.22688 4.30787 4.32997 4.39470 4.41208 4.44320 4.53506 4.60341 4.70225 4.89368 4.98403 4.99475 5.03413 5.10513 5.10935 5.19090 5.24619 5.26663 5.28645 5.43588 5.66058 5.70731 5.72520 5.80759 6.11187 6.28623 6.30787 6.54406 6.85028 7.27171 7.45160 8.89270 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.002477 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.922123 B =11302.764304 C =12998.886985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.032 3.968 3 Si 0.938 3.062 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.525 4.525 8 H 0.045 0.955 9 C 0.249 3.751 10 N -0.595 5.595 11 C 0.196 3.804 12 C -0.039 4.039 13 C -0.190 4.190 14 C -0.229 4.229 15 C -0.050 4.050 16 O -0.193 6.193 17 C 0.513 3.487 18 O -0.589 6.589 19 C -0.122 4.122 20 C -0.090 4.090 21 C 0.064 3.936 22 O -0.333 6.333 23 C 0.075 3.925 24 C -0.191 4.191 25 C -0.085 4.085 26 C -0.125 4.125 27 C -0.115 4.115 28 C 0.029 3.971 29 F -0.152 7.152 30 H 0.266 0.734 31 H 0.042 0.958 32 H 0.029 0.971 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.235 0.765 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.169 0.831 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -3.181 -12.221 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.169 4.169 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.063 0.937 9 C 0.129 3.871 10 N -0.325 5.325 11 C 0.073 3.927 12 C -0.090 4.090 13 C -0.210 4.210 14 C -0.248 4.248 15 C -0.117 4.117 16 O -0.090 6.090 17 C 0.303 3.697 18 O -0.471 6.471 19 C -0.161 4.161 20 C -0.129 4.129 21 C -0.010 4.010 22 O -0.247 6.247 23 C 0.029 3.971 24 C -0.209 4.209 25 C -0.103 4.103 26 C -0.143 4.143 27 C -0.134 4.134 28 C 0.009 3.991 29 F -0.131 7.131 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.162 0.838 36 H 0.182 0.818 37 H 0.251 0.749 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.167 0.833 45 H 0.180 0.820 46 H 0.186 0.814 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.991 -3.975 -12.297 13.076 hybrid contribution 0.586 1.219 0.738 1.541 sum 2.576 -2.756 -11.559 12.159 Atomic orbital electron populations 1.69968 1.06722 1.27844 1.51000 1.25385 0.95302 1.01298 0.94886 0.85850 0.78777 0.80580 0.78278 1.20147 1.20867 1.20287 1.21502 0.92833 0.91291 1.50787 0.93674 1.19259 0.87137 0.82362 0.98349 1.48325 1.44697 1.35001 1.04527 1.19811 0.89481 0.96554 0.86886 1.23024 0.84452 0.99941 1.01580 1.21715 0.98278 0.97538 1.03454 1.22117 0.93136 1.03282 1.06295 1.24713 0.97088 0.91106 0.98790 1.84053 1.16405 1.48054 1.60442 1.20942 0.80181 0.81918 0.86690 1.90620 1.36639 1.31538 1.88310 1.21418 1.02989 1.01607 0.90102 1.21080 1.00770 1.00307 0.90692 1.22920 0.98375 0.96160 0.83564 1.86078 1.67097 1.59033 1.12500 1.19397 0.97252 0.96266 0.84147 1.21520 1.00440 0.98077 1.00905 1.21488 0.98524 0.99455 0.90788 1.21385 0.96703 0.95206 1.01031 1.21360 0.99140 0.98789 0.94089 1.17548 0.96594 0.91483 0.93479 1.91446 1.67403 1.57904 1.96381 0.92471 0.94008 0.95307 0.85933 0.89377 0.83849 0.81788 0.74932 0.86978 0.88173 0.92317 0.91131 0.89601 0.90560 0.83286 0.82026 0.81353 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.11 13.29 21.44 0.28 -46.83 16 2 C 0.03 1.57 5.46 84.65 0.46 2.03 16 3 Si 0.94 40.50 29.54 68.60 2.03 42.52 16 4 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -25.46 9.04 25.60 0.23 -25.23 16 8 H 0.04 2.34 7.65 -2.91 -0.02 2.32 16 9 C 0.25 10.85 5.01 85.63 0.43 11.28 16 10 N -0.60 -23.90 2.44 -830.48 -2.03 -25.92 16 11 C 0.20 7.16 5.98 85.63 0.51 7.68 16 12 C -0.04 -1.51 6.90 24.83 0.17 -1.34 16 13 C -0.19 -7.08 10.40 22.19 0.23 -6.85 16 14 C -0.23 -7.45 10.91 22.19 0.24 -7.21 16 15 C -0.05 -1.55 12.09 66.97 0.81 -0.74 16 16 O -0.19 -7.51 10.65 -2.46 -0.03 -7.54 16 17 C 0.51 20.69 7.67 87.66 0.67 21.36 16 18 O -0.59 -26.60 15.56 -3.06 -0.05 -26.65 16 19 C -0.12 -4.07 4.25 29.84 0.13 -3.94 16 20 C -0.09 -2.82 4.87 30.59 0.15 -2.67 16 21 C 0.06 1.68 4.74 71.98 0.34 2.02 16 22 O -0.33 -10.13 10.00 -93.03 -0.93 -11.06 16 23 C 0.08 1.99 6.69 22.53 0.15 2.14 16 24 C -0.19 -3.86 9.04 22.36 0.20 -3.65 16 25 C -0.08 -1.24 10.04 22.26 0.22 -1.01 16 26 C -0.13 -1.64 10.04 22.28 0.22 -1.41 16 27 C -0.12 -2.01 10.02 22.30 0.22 -1.78 16 28 C 0.03 0.73 7.31 22.45 0.16 0.89 16 29 F -0.15 -4.55 17.11 44.97 0.77 -3.78 16 30 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.04 1.82 6.44 -2.39 -0.02 1.81 16 32 H 0.03 1.31 7.89 -2.39 -0.02 1.29 16 33 H 0.12 3.88 7.89 -2.39 -0.02 3.86 16 34 H 0.09 3.17 7.42 -2.38 -0.02 3.15 16 35 H 0.14 5.38 8.06 -2.91 -0.02 5.35 16 36 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.23 4.93 8.06 -2.91 -0.02 4.90 16 38 H 0.11 3.31 7.40 -2.39 -0.02 3.29 16 39 H 0.10 3.53 8.00 -2.39 -0.02 3.51 16 40 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 41 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 42 H 0.09 1.88 7.66 -2.39 -0.02 1.86 16 43 H 0.08 1.83 7.66 -2.39 -0.02 1.81 16 44 H 0.15 2.65 6.30 -2.91 -0.02 2.63 16 45 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 47 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -66.97 407.56 6.60 -60.36 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.99 Total: 27.33 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 5.57 Total: -8.44 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.74 Total: -72.75 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.00 Total: -45.24 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.77 Total: -3.78 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -66.97 6.60 -60.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058367311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.648 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds