Wall clock time and date at job start Tue Mar 31 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46838 * 245.37946 * 3 2 1 5 5 C 1.37092 * 120.00104 * 263.95243 * 4 3 2 6 6 H 1.08001 * 120.00133 * 200.22064 * 5 4 3 7 7 C 1.38957 * 119.99951 * 20.21634 * 5 4 3 8 8 N 1.31406 * 119.99861 * 21.42795 * 7 5 4 9 9 Si 1.86804 * 120.00075 * 201.42302 * 7 5 4 10 10 H 1.48501 * 109.46905 * 60.00138 * 9 7 5 11 11 H 1.48498 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47137 * 300.00295 * 9 7 5 13 13 C 1.34777 * 119.99805 * 83.95001 * 4 3 2 14 14 O 1.21291 * 119.99692 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00086 * 0.02562 * 13 4 3 16 16 C 1.52995 * 109.46774 * 179.97438 * 15 13 4 17 17 C 1.50709 * 109.46802 * 179.97438 * 16 15 13 18 18 N 1.30333 * 125.48060 * 89.97589 * 17 16 15 19 19 C 1.34174 * 108.90084 * 179.74989 * 18 17 16 20 20 C 1.35775 * 107.51600 * 0.43167 * 19 18 17 21 21 C 1.47817 * 126.58357 * 179.83869 * 20 19 18 22 22 C 1.39568 * 120.12888 * 309.68521 * 21 20 19 23 23 C 1.37913 * 119.90068 * 180.02562 * 22 21 20 24 24 C 1.38617 * 120.17165 * 359.97438 * 23 22 21 25 25 F 1.35098 * 119.86749 * 180.02562 * 24 23 22 26 26 C 1.38515 * 120.26007 * 0.02562 * 24 23 22 27 27 C 1.38171 * 120.09889 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.08741 * 180.02562 * 27 26 24 29 29 O 1.34038 * 125.48383 * 269.99771 * 17 16 15 30 30 H 1.08998 * 109.47643 * 125.38405 * 3 2 1 31 31 H 1.08998 * 109.47508 * 5.37554 * 3 2 1 32 32 H 0.96999 * 120.00207 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47295 * 59.99696 * 15 13 4 34 34 H 1.09002 * 109.47137 * 299.99593 * 15 13 4 35 35 H 1.09000 * 109.47769 * 59.99877 * 16 15 13 36 36 H 1.08999 * 109.47642 * 299.99032 * 16 15 13 37 37 H 1.07997 * 126.24380 * 180.26706 * 19 18 17 38 38 H 1.07999 * 120.04991 * 0.02562 * 22 21 20 39 39 H 1.08002 * 119.91596 * 179.72493 * 23 22 21 40 40 H 1.08003 * 119.95051 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.5763 1.2557 5 6 3.4418 1.9017 1.3135 6 1 4.0909 2.2566 2.1003 7 6 2.9572 2.7884 0.3597 8 7 1.8748 2.4914 -0.3236 9 14 3.8445 4.4026 0.0488 10 1 5.2352 4.1260 -0.3923 11 1 3.1315 5.1637 -1.0084 12 1 3.8717 5.2015 1.3002 13 6 3.2050 -0.1970 2.3541 14 8 3.6095 0.2795 3.3936 15 6 2.8253 -1.6541 2.2905 16 6 3.0419 -2.2978 3.6614 17 6 2.6617 -3.7547 3.5980 18 7 3.4658 -4.7338 3.2921 19 6 2.7838 -5.8882 3.3421 20 6 1.5040 -5.5921 3.6856 21 6 0.3932 -6.5522 3.8569 22 6 0.1223 -7.4946 2.8637 23 6 -0.9155 -8.3878 3.0281 24 6 -1.6898 -8.3523 4.1774 25 9 -2.7046 -9.2305 4.3323 26 6 -1.4270 -7.4199 5.1675 27 6 -0.3899 -6.5199 5.0141 28 9 -0.1335 -5.6110 5.9802 29 8 1.4421 -4.2521 3.8465 30 1 2.9712 0.5959 -0.8378 31 1 2.9719 -1.0223 -0.0963 32 1 1.5367 3.1101 -0.9897 33 1 3.4457 -2.1592 1.5502 34 1 1.7764 -1.7442 2.0080 35 1 2.4219 -1.7928 4.4021 36 1 4.0909 -2.2078 3.9435 37 1 3.1798 -6.8729 3.1427 38 1 0.7245 -7.5243 1.9677 39 1 -1.1282 -9.1142 2.2577 40 1 -2.0332 -7.3970 6.0611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058379965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:43 Heat of formation + Delta-G solvation = -37.232156 kcal Electronic energy + Delta-G solvation = -30306.236503 eV Core-core repulsion = 25531.650798 eV Total energy + Delta-G solvation = -4774.585706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.102 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.52791 -49.40985 -43.38156 -39.27002 -38.97057 -35.92735 -34.92564 -34.47367 -33.71341 -32.26848 -31.78130 -31.34930 -28.48578 -27.47210 -25.85401 -24.20195 -23.93670 -23.15250 -22.05299 -21.04883 -19.15547 -18.77157 -17.95415 -17.86518 -17.60222 -16.86005 -16.54256 -16.48435 -16.35787 -16.19651 -15.80678 -15.73730 -14.95055 -14.81582 -14.71666 -14.50076 -14.26959 -13.76998 -13.65453 -13.33414 -13.05174 -12.93858 -12.71758 -12.63076 -12.47971 -12.08294 -12.01134 -11.88038 -11.63798 -11.37057 -11.32414 -11.16999 -10.93753 -10.71002 -10.59832 -10.45630 -10.35125 -9.81666 -9.54883 -9.29128 -8.74521 -8.49828 -8.07900 -6.54161 -4.05279 0.09306 0.44184 1.32541 2.36430 2.53411 2.87446 3.09825 3.20388 3.22517 3.29095 3.49719 3.73307 3.78955 3.86003 3.94050 4.02025 4.10323 4.21774 4.35798 4.56680 4.74484 4.82287 4.86158 5.07579 5.14686 5.18835 5.20805 5.30606 5.32237 5.41581 5.41788 5.53889 5.66570 5.78091 5.81518 5.99448 6.09990 6.13183 6.17569 6.27110 6.42435 7.43734 7.62470 7.84895 8.22590 8.70553 8.94618 9.14185 9.66750 10.52030 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.002004 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.176932 B =13972.042074 C =14615.914932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.244 3.756 3 C 0.221 3.779 4 N -0.440 5.440 5 C -0.316 4.316 6 H 0.109 0.891 7 C 0.033 3.967 8 N -0.875 5.875 9 Si 0.928 3.072 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.459 3.541 14 O -0.572 6.572 15 C -0.133 4.133 16 C -0.008 4.008 17 C 0.222 3.778 18 N -0.483 5.483 19 C -0.002 4.002 20 C -0.034 4.034 21 C -0.054 4.054 22 C -0.034 4.034 23 C -0.161 4.161 24 C 0.140 3.860 25 F -0.128 7.128 26 C -0.192 4.192 27 C 0.154 3.846 28 F -0.118 7.118 29 O -0.186 6.186 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.274 0.726 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.187 0.813 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 -22.828 3.423 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.075 4.075 3 C 0.093 3.907 4 N -0.160 5.160 5 C -0.443 4.443 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.513 5.513 9 Si 0.754 3.246 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.247 3.753 14 O -0.455 6.455 15 C -0.175 4.175 16 C -0.047 4.047 17 C 0.017 3.983 18 N -0.211 5.211 19 C -0.143 4.143 20 C -0.087 4.087 21 C -0.056 4.056 22 C -0.052 4.052 23 C -0.180 4.180 24 C 0.121 3.879 25 F -0.106 7.106 26 C -0.211 4.211 27 C 0.134 3.866 28 F -0.096 7.096 29 O -0.073 6.073 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.204 0.796 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.115 -22.335 3.702 22.853 hybrid contribution -0.374 0.778 0.043 0.864 sum -3.488 -21.558 3.745 22.157 Atomic orbital electron populations 1.80900 1.13587 1.12100 1.08404 1.29277 0.95363 0.90130 0.92710 1.18711 0.81665 0.98713 0.91580 1.43593 1.56414 1.09677 1.06314 1.19659 1.28131 0.82152 1.14367 0.87375 1.25312 0.94763 0.99732 0.97303 1.69835 1.17948 1.38490 1.25039 0.85958 0.79396 0.80889 0.78319 1.19629 1.21057 1.19771 1.19876 0.84075 0.87441 0.83870 1.90561 1.50399 1.75221 1.29307 1.21612 1.03274 0.95581 0.97003 1.19958 1.04874 0.80496 0.99346 1.26740 0.77233 0.98318 0.96058 1.70454 1.33186 0.97952 1.19504 1.23376 0.89275 0.98492 1.03110 1.20892 0.96118 0.81172 1.10491 1.17653 0.95827 0.97162 0.94942 1.20956 0.95454 0.91625 0.97159 1.21142 0.96754 1.02226 0.97859 1.17418 0.86831 0.88994 0.94690 1.91558 1.56967 1.66359 1.95702 1.20989 1.00510 0.97467 1.02158 1.17391 0.94634 0.88451 0.86079 1.91595 1.93054 1.64190 1.60789 1.84563 1.35502 1.20054 1.67199 0.85735 0.89673 0.91520 0.88977 0.89860 0.88022 0.86377 0.79558 0.82968 0.83107 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.01 18.54 42.15 0.78 -10.23 16 2 C 0.24 5.25 12.82 -20.76 -0.27 4.99 16 3 C 0.22 4.20 4.91 -6.82 -0.03 4.17 16 4 N -0.44 -9.86 2.60 -117.93 -0.31 -10.17 16 5 C -0.32 -7.89 9.27 -14.93 -0.14 -8.03 16 6 H 0.11 2.84 7.43 -52.49 -0.39 2.45 16 7 C 0.03 0.80 4.84 -17.47 -0.08 0.71 16 8 N -0.87 -21.74 9.58 55.50 0.53 -21.21 16 9 Si 0.93 19.24 29.60 -169.99 -5.03 14.21 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.46 9.81 7.56 -10.98 -0.08 9.73 16 14 O -0.57 -14.05 15.65 5.55 0.09 -13.97 16 15 C -0.13 -2.18 4.29 -27.88 -0.12 -2.30 16 16 C -0.01 -0.13 5.13 -27.88 -0.14 -0.27 16 17 C 0.22 3.28 7.58 -12.91 -0.10 3.18 16 18 N -0.48 -6.90 11.27 -10.80 -0.12 -7.02 16 19 C 0.00 -0.02 11.78 -17.41 -0.21 -0.23 16 20 C -0.03 -0.42 6.42 -36.55 -0.23 -0.65 16 21 C -0.05 -0.53 5.81 -104.91 -0.61 -1.14 16 22 C -0.03 -0.23 9.71 -39.20 -0.38 -0.61 16 23 C -0.16 -0.96 10.01 -39.56 -0.40 -1.36 16 24 C 0.14 1.03 7.30 -39.34 -0.29 0.75 16 25 F -0.13 -1.00 17.26 2.25 0.04 -0.96 16 26 C -0.19 -1.54 9.99 -39.50 -0.39 -1.94 16 27 C 0.15 1.57 7.28 -39.03 -0.28 1.29 16 28 F -0.12 -1.45 16.82 2.25 0.04 -1.41 16 29 O -0.19 -2.80 10.79 4.16 0.04 -2.75 16 30 H 0.12 2.41 6.63 -51.93 -0.34 2.07 16 31 H 0.09 1.22 6.69 -51.93 -0.35 0.87 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.09 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.08 1.38 7.49 -51.93 -0.39 0.99 16 35 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 36 H 0.12 1.75 8.10 -51.93 -0.42 1.33 16 37 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -31.94 370.54 -5.64 -37.58 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.52 Total: 2.07 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -3.76 Total: 8.28 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.89 Total: -48.63 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.13 Total: -16.72 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.38 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.94 -5.64 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058379965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.343 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds