Wall clock time and date at job start Tue Mar 31 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46838 * 245.37946 * 3 2 1 5 5 C 1.37092 * 120.00104 * 263.95243 * 4 3 2 6 6 H 1.08001 * 120.00133 * 200.22064 * 5 4 3 7 7 C 1.38957 * 119.99951 * 20.21634 * 5 4 3 8 8 N 1.31406 * 119.99861 * 21.42795 * 7 5 4 9 9 Si 1.86804 * 120.00075 * 201.42302 * 7 5 4 10 10 H 1.48501 * 109.46905 * 60.00138 * 9 7 5 11 11 H 1.48498 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47137 * 300.00295 * 9 7 5 13 13 C 1.34777 * 119.99805 * 83.95001 * 4 3 2 14 14 O 1.21291 * 119.99692 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00086 * 0.02562 * 13 4 3 16 16 C 1.52995 * 109.46774 * 179.97438 * 15 13 4 17 17 C 1.50709 * 109.46802 * 179.97438 * 16 15 13 18 18 N 1.30333 * 125.48060 * 89.97589 * 17 16 15 19 19 C 1.34174 * 108.90084 * 179.74989 * 18 17 16 20 20 C 1.35775 * 107.51600 * 0.43167 * 19 18 17 21 21 C 1.47817 * 126.58357 * 179.83869 * 20 19 18 22 22 C 1.39568 * 120.12888 * 309.68521 * 21 20 19 23 23 C 1.37913 * 119.90068 * 180.02562 * 22 21 20 24 24 C 1.38617 * 120.17165 * 359.97438 * 23 22 21 25 25 F 1.35098 * 119.86749 * 180.02562 * 24 23 22 26 26 C 1.38515 * 120.26007 * 0.02562 * 24 23 22 27 27 C 1.38171 * 120.09889 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.08741 * 180.02562 * 27 26 24 29 29 O 1.34038 * 125.48383 * 269.99771 * 17 16 15 30 30 H 1.08998 * 109.47643 * 125.38405 * 3 2 1 31 31 H 1.08998 * 109.47508 * 5.37554 * 3 2 1 32 32 H 0.96999 * 120.00207 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47295 * 59.99696 * 15 13 4 34 34 H 1.09002 * 109.47137 * 299.99593 * 15 13 4 35 35 H 1.09000 * 109.47769 * 59.99877 * 16 15 13 36 36 H 1.08999 * 109.47642 * 299.99032 * 16 15 13 37 37 H 1.07997 * 126.24380 * 180.26706 * 19 18 17 38 38 H 1.07999 * 120.04991 * 0.02562 * 22 21 20 39 39 H 1.08002 * 119.91596 * 179.72493 * 23 22 21 40 40 H 1.08003 * 119.95051 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.5763 1.2557 5 6 3.4418 1.9017 1.3135 6 1 4.0909 2.2566 2.1003 7 6 2.9572 2.7884 0.3597 8 7 1.8748 2.4914 -0.3236 9 14 3.8445 4.4026 0.0488 10 1 5.2352 4.1260 -0.3923 11 1 3.1315 5.1637 -1.0084 12 1 3.8717 5.2015 1.3002 13 6 3.2050 -0.1970 2.3541 14 8 3.6095 0.2795 3.3936 15 6 2.8253 -1.6541 2.2905 16 6 3.0419 -2.2978 3.6614 17 6 2.6617 -3.7547 3.5980 18 7 3.4658 -4.7338 3.2921 19 6 2.7838 -5.8882 3.3421 20 6 1.5040 -5.5921 3.6856 21 6 0.3932 -6.5522 3.8569 22 6 0.1223 -7.4946 2.8637 23 6 -0.9155 -8.3878 3.0281 24 6 -1.6898 -8.3523 4.1774 25 9 -2.7046 -9.2305 4.3323 26 6 -1.4270 -7.4199 5.1675 27 6 -0.3899 -6.5199 5.0141 28 9 -0.1335 -5.6110 5.9802 29 8 1.4421 -4.2521 3.8465 30 1 2.9712 0.5959 -0.8378 31 1 2.9719 -1.0223 -0.0963 32 1 1.5367 3.1101 -0.9897 33 1 3.4457 -2.1592 1.5502 34 1 1.7764 -1.7442 2.0080 35 1 2.4219 -1.7928 4.4021 36 1 4.0909 -2.2078 3.9435 37 1 3.1798 -6.8729 3.1427 38 1 0.7245 -7.5243 1.9677 39 1 -1.1282 -9.1142 2.2577 40 1 -2.0332 -7.3970 6.0611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058379965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:43 Heat of formation + Delta-G solvation = -56.665080 kcal Electronic energy + Delta-G solvation = -30307.079178 eV Core-core repulsion = 25531.650798 eV Total energy + Delta-G solvation = -4775.428380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.22820 -50.11785 -44.39195 -40.67589 -39.86853 -37.65867 -36.25593 -35.94021 -34.93575 -33.74739 -32.96835 -31.95796 -29.58969 -29.04591 -27.28572 -25.50652 -24.74698 -23.94230 -22.97294 -22.09425 -20.76772 -19.73238 -19.44791 -18.75789 -18.34354 -18.23747 -17.99020 -17.56215 -17.15784 -17.04147 -16.78269 -16.46149 -16.44029 -16.13069 -15.94037 -15.62887 -15.13287 -14.95392 -14.71421 -14.56854 -14.47162 -14.13908 -14.04655 -13.74154 -13.44102 -13.37637 -13.28597 -13.15281 -13.04639 -12.85127 -12.60274 -12.45573 -12.33470 -12.27860 -12.12279 -12.00707 -11.73110 -11.09532 -10.59049 -10.42497 -10.17399 -9.90563 -9.37443 -8.39392 -5.96434 -0.59664 -0.13495 0.39182 1.42125 1.45993 1.50645 1.55644 1.59625 1.81747 2.06302 2.22932 2.25452 2.36857 2.66143 2.80895 3.01548 3.17792 3.23076 3.37600 3.50279 3.58902 3.80226 3.83010 3.94590 3.98805 4.06593 4.11843 4.38272 4.46760 4.57748 4.64145 4.67889 4.76550 4.78441 4.86948 4.89361 4.92113 4.98311 5.01795 5.23623 5.50439 5.55797 6.04748 6.39528 6.61539 7.00982 7.12489 7.35267 7.90954 8.64361 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.002004 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.176932 B =13972.042074 C =14615.914932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.256 3.744 3 C 0.221 3.779 4 N -0.454 5.454 5 C -0.340 4.340 6 H 0.085 0.915 7 C 0.005 3.995 8 N -0.892 5.892 9 Si 0.986 3.014 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.455 3.545 14 O -0.611 6.611 15 C -0.118 4.118 16 C -0.001 4.001 17 C 0.204 3.796 18 N -0.491 5.491 19 C -0.001 4.001 20 C -0.035 4.035 21 C -0.073 4.073 22 C -0.021 4.021 23 C -0.145 4.145 24 C 0.138 3.862 25 F -0.129 7.129 26 C -0.192 4.192 27 C 0.128 3.872 28 F -0.140 7.140 29 O -0.209 6.209 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.274 0.726 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.225 0.775 38 H 0.181 0.819 39 H 0.184 0.816 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 -25.387 1.711 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.061 4.061 3 C 0.095 3.905 4 N -0.173 5.173 5 C -0.468 4.468 6 H 0.103 0.897 7 C -0.197 4.197 8 N -0.531 5.531 9 Si 0.811 3.189 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.245 3.755 14 O -0.496 6.496 15 C -0.159 4.159 16 C -0.039 4.039 17 C -0.001 4.001 18 N -0.220 5.220 19 C -0.141 4.141 20 C -0.088 4.088 21 C -0.075 4.075 22 C -0.039 4.039 23 C -0.163 4.163 24 C 0.118 3.882 25 F -0.108 7.108 26 C -0.212 4.212 27 C 0.108 3.892 28 F -0.118 7.118 29 O -0.096 6.096 30 H 0.141 0.859 31 H 0.157 0.843 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.242 0.758 38 H 0.199 0.801 39 H 0.201 0.799 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.805 -24.916 1.976 25.152 hybrid contribution -0.545 1.449 0.631 1.672 sum -3.350 -23.467 2.608 23.848 Atomic orbital electron populations 1.80900 1.14834 1.13525 1.09607 1.29785 0.95870 0.88918 0.91559 1.19067 0.80030 1.01485 0.89958 1.43774 1.56574 1.09186 1.07812 1.19585 1.28723 0.83924 1.14533 0.89724 1.25918 0.94970 1.02155 0.96682 1.69919 1.18543 1.39344 1.25260 0.85087 0.78987 0.77341 0.77499 1.18282 1.20757 1.20892 1.20715 0.82500 0.89294 0.82983 1.90534 1.51796 1.76536 1.30777 1.21502 1.03648 0.92059 0.98685 1.19747 1.04668 0.81159 0.98348 1.26424 0.77584 0.98104 0.97970 1.70438 1.33479 0.98746 1.19328 1.23954 0.88671 0.99088 1.02383 1.21458 0.97378 0.80374 1.09561 1.17863 0.95871 0.97829 0.95894 1.21269 0.95489 0.90164 0.96997 1.21499 0.95288 1.01869 0.97635 1.17570 0.86918 0.88652 0.95022 1.91561 1.57118 1.66328 1.95752 1.21078 0.99972 0.97178 1.02926 1.17671 0.96019 0.89178 0.86328 1.91535 1.93387 1.65174 1.61743 1.84543 1.35745 1.21750 1.67548 0.85902 0.84254 0.91633 0.85752 0.89789 0.89367 0.86331 0.75824 0.80128 0.79857 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.66 18.54 20.01 0.37 -23.29 16 2 C 0.26 10.84 12.82 89.44 1.15 11.99 16 3 C 0.22 8.08 4.91 84.57 0.42 8.49 16 4 N -0.45 -20.25 2.60 -645.39 -1.68 -21.92 16 5 C -0.34 -17.20 9.27 84.04 0.78 -16.43 16 6 H 0.08 4.60 7.43 -2.91 -0.02 4.58 16 7 C 0.01 0.25 4.84 84.93 0.41 0.66 16 8 N -0.89 -44.13 9.58 21.66 0.21 -43.92 16 9 Si 0.99 39.42 29.60 68.60 2.03 41.45 16 10 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 11 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.45 19.48 7.56 87.66 0.66 20.15 16 14 O -0.61 -30.82 15.65 -3.06 -0.05 -30.87 16 15 C -0.12 -3.73 4.29 29.85 0.13 -3.60 16 16 C 0.00 -0.02 5.13 29.85 0.15 0.13 16 17 C 0.20 5.93 7.58 88.33 0.67 6.60 16 18 N -0.49 -13.23 11.27 -302.81 -3.41 -16.65 16 19 C 0.00 -0.02 11.78 83.76 0.99 0.97 16 20 C -0.04 -0.83 6.42 24.24 0.16 -0.67 16 21 C -0.07 -1.33 5.81 -20.05 -0.12 -1.44 16 22 C -0.02 -0.22 9.71 22.51 0.22 0.00 16 23 C -0.14 -1.19 10.01 22.28 0.22 -0.97 16 24 C 0.14 1.71 7.30 22.43 0.16 1.88 16 25 F -0.13 -1.73 17.26 44.97 0.78 -0.96 16 26 C -0.19 -2.92 9.99 22.32 0.22 -2.70 16 27 C 0.13 2.56 7.28 22.62 0.16 2.73 16 28 F -0.14 -3.59 16.82 44.97 0.76 -2.84 16 29 O -0.21 -6.25 10.79 -8.04 -0.09 -6.34 16 30 H 0.12 4.60 6.63 -2.39 -0.02 4.58 16 31 H 0.14 3.53 6.69 -2.39 -0.02 3.51 16 32 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 33 H 0.12 3.12 7.42 -2.39 -0.02 3.10 16 34 H 0.08 2.69 7.49 -2.39 -0.02 2.67 16 35 H 0.09 2.87 8.10 -2.39 -0.02 2.85 16 36 H 0.12 3.54 8.10 -2.39 -0.02 3.52 16 37 H 0.23 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 40 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -71.51 370.54 6.43 -65.08 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.13 Total: 12.48 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 6.38 Total: 27.78 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -4.51 Total: -105.78 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.13 Total: -37.21 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 1.53 Total: -3.79 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -71.51 6.43 -65.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058379965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.415 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds