Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.99579 * 2 1 4 4 C 1.38219 * 119.99558 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99947 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00379 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00340 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46990 * 89.99993 * 7 6 5 9 9 C 1.34522 * 124.61812 * 264.97516 * 8 7 6 10 10 C 1.39115 * 109.43203 * 180.02562 * 9 8 7 11 11 C 1.41525 * 126.96055 * 179.97438 * 10 9 8 12 12 N 1.31261 * 119.99947 * 180.02562 * 11 10 9 13 13 N 1.40095 * 119.99972 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00018 * 180.02562 * 13 12 11 15 15 O 1.22107 * 119.99844 * 359.97438 * 14 13 12 16 16 C 1.39725 * 120.00225 * 180.02562 * 14 13 12 17 17 H 1.07999 * 119.99757 * 359.97438 * 16 14 13 18 18 C 1.40036 * 120.00142 * 179.97438 * 16 14 13 19 19 N 1.30698 * 120.00139 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00039 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47096 * 89.99845 * 20 18 16 22 22 H 1.48502 * 109.47276 * 210.00135 * 20 18 16 23 23 H 1.48504 * 109.47103 * 330.00025 * 20 18 16 24 24 C 1.47438 * 106.07774 * 0.25982 * 10 9 8 25 25 C 1.39318 * 133.91016 * 179.74096 * 24 10 9 26 26 C 1.37922 * 119.65948 * 180.02562 * 25 24 10 27 27 C 1.38627 * 120.24665 * 359.97385 * 26 25 24 28 28 C 1.38034 * 120.64831 * 359.63188 * 27 26 25 29 29 C 1.38253 * 124.61887 * 84.97824 * 8 7 6 30 30 C 1.38212 * 119.99927 * 180.27265 * 2 1 3 31 31 H 1.09005 * 109.47206 * 89.99701 * 1 2 3 32 32 H 1.09001 * 109.47364 * 209.99865 * 1 2 3 33 33 H 1.09003 * 109.47194 * 330.00037 * 1 2 3 34 34 H 1.07998 * 120.00374 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00123 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.00121 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46783 * 329.99841 * 7 6 5 38 38 H 1.08999 * 109.46814 * 210.00015 * 7 6 5 39 39 H 1.08001 * 125.28326 * 359.97438 * 9 8 7 40 40 H 1.07999 * 119.99989 * 0.02568 * 11 10 9 41 41 H 0.96998 * 119.99958 * 359.97438 * 13 12 11 42 42 H 0.97005 * 120.00119 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.16848 * 0.02562 * 25 24 10 44 44 H 1.08002 * 119.87588 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.67311 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.01088 * 179.85598 * 28 27 26 47 47 H 1.08003 * 120.00274 * 0.03101 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3341 -2.5020 0.0000 8 7 4.5788 -2.9252 1.3810 9 6 5.7072 -2.6738 2.0689 10 6 5.6023 -3.2176 3.3450 11 6 6.5743 -3.1705 4.3726 12 7 6.3304 -3.7336 5.5329 13 7 7.2923 -3.6866 6.5504 14 6 7.0421 -4.2653 7.7416 15 8 5.9769 -4.8301 7.9342 16 6 8.0013 -4.2179 8.7565 17 1 8.9433 -3.7179 8.5863 18 6 7.7411 -4.8187 9.9944 19 7 6.6009 -5.4233 10.2006 20 14 9.0237 -4.7560 11.3510 21 1 8.8119 -3.5399 12.1767 22 1 8.8987 -5.9632 12.2067 23 1 10.3803 -4.7149 10.7482 24 6 4.2762 -3.8589 3.4078 25 6 3.5903 -4.5655 4.3933 26 6 2.3262 -5.0505 4.1306 27 6 1.7394 -4.8365 2.8930 28 6 2.4053 -4.1310 1.9111 29 6 3.6815 -3.6375 2.1549 30 6 2.1981 -1.1969 -0.0057 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1327 0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3517 0.0000 0.0005 37 1 5.2863 -2.3715 -0.5142 38 1 3.7448 -3.2615 -0.5138 39 1 6.5623 -2.1343 1.6890 40 1 7.5166 -2.6712 4.2021 41 1 8.1387 -3.2382 6.3972 42 1 6.4208 -5.8398 11.0580 43 1 4.0461 -4.7325 5.3580 44 1 1.7912 -5.5984 4.8922 45 1 0.7489 -5.2201 2.6974 46 1 1.9393 -3.9723 0.9498 47 1 1.6581 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059140331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = 87.932890 kcal Electronic energy + Delta-G solvation = -30192.441805 eV Core-core repulsion = 26113.346288 eV Total energy + Delta-G solvation = -4079.095518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26097 -39.60076 -37.46559 -36.84649 -35.35265 -33.97606 -32.82421 -32.45632 -31.51011 -30.10179 -29.56861 -28.56635 -27.29668 -26.86648 -25.73892 -22.93111 -22.66201 -22.13525 -21.49796 -20.54625 -19.73706 -19.05175 -17.52976 -16.92942 -16.56573 -16.40728 -15.82570 -15.66318 -15.52299 -15.42736 -15.00089 -14.47924 -14.16796 -14.02846 -13.72371 -13.68580 -13.33089 -13.25852 -12.93878 -12.92494 -12.74012 -12.61940 -12.36643 -12.24074 -12.16959 -11.68011 -11.43037 -11.36784 -11.32853 -11.24498 -11.06999 -10.76414 -10.61855 -10.54398 -10.31724 -9.33496 -9.21776 -9.16156 -8.95783 -8.89442 -7.98036 -7.89831 -7.64891 -6.61281 -6.32316 -4.88301 0.91338 1.07690 1.28607 1.87484 2.24567 2.82716 3.08110 3.14528 3.18484 3.51156 3.65801 3.90049 4.21061 4.27778 4.32309 4.37712 4.52999 4.55589 4.69199 4.76657 4.81787 4.96483 4.96731 5.08009 5.14802 5.20165 5.27094 5.33393 5.43727 5.47973 5.55388 5.66340 5.72059 5.81208 5.87530 5.88396 5.99424 6.00318 6.12438 6.18815 6.27143 6.43576 6.55887 6.66640 6.67157 6.88457 6.92184 7.14356 7.21710 7.26769 7.41029 7.50334 7.96993 8.08250 8.82596 8.89666 9.44412 10.46106 10.77359 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002026 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.790357 B =13816.115722 C =14541.439382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.117 4.117 5 C -0.105 4.105 6 C -0.109 4.109 7 C 0.151 3.849 8 N -0.463 5.463 9 C 0.060 3.940 10 C -0.112 4.112 11 C 0.054 3.946 12 N -0.196 5.196 13 N -0.593 5.593 14 C 0.560 3.440 15 O -0.557 6.557 16 C -0.537 4.537 17 H 0.069 0.931 18 C 0.088 3.912 19 N -0.743 5.743 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.075 4.075 25 C -0.049 4.049 26 C -0.153 4.153 27 C -0.102 4.102 28 C -0.139 4.139 29 C 0.088 3.912 30 C -0.097 4.097 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.171 0.829 40 H 0.101 0.899 41 H 0.365 0.635 42 H 0.273 0.727 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.109 0.891 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 10.512 -24.622 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.135 4.135 5 C -0.124 4.124 6 C -0.110 4.110 7 C 0.030 3.970 8 N -0.144 5.144 9 C -0.073 4.073 10 C -0.121 4.121 11 C -0.154 4.154 12 N -0.006 5.006 13 N -0.339 5.339 14 C 0.369 3.631 15 O -0.437 6.437 16 C -0.573 4.573 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.370 5.370 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.079 4.079 25 C -0.067 4.067 26 C -0.172 4.172 27 C -0.121 4.121 28 C -0.160 4.160 29 C -0.016 4.016 30 C -0.116 4.116 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.188 0.812 40 H 0.118 0.882 41 H 0.200 0.800 42 H 0.084 0.916 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.780 9.527 -23.912 27.196 hybrid contribution 1.899 0.929 0.177 2.121 sum -6.881 10.456 -23.735 26.834 Atomic orbital electron populations 1.20808 0.91019 1.03127 1.02274 1.19927 0.96251 0.93048 0.99476 1.21096 0.94352 0.97580 1.00237 1.21126 0.94328 0.98016 1.00070 1.21007 0.99819 0.91904 0.99642 1.20046 0.94100 0.94828 1.02026 1.20624 1.01300 0.93740 0.81374 1.43227 1.13468 1.46332 1.11398 1.22132 0.90587 1.02942 0.91621 1.17898 0.94293 1.06934 0.92969 1.22041 0.97540 1.03658 0.92150 1.75149 1.16965 1.11498 0.97017 1.47991 1.14859 1.58897 1.12145 1.16462 0.88849 0.79235 0.78575 1.90747 1.26961 1.46500 1.79487 1.19528 1.02913 1.37561 0.97338 0.91293 1.25739 0.95633 0.93052 0.99123 1.70073 1.21163 1.22909 1.22892 0.86245 0.81137 0.78432 0.80253 1.19479 1.20181 1.18702 1.18991 0.94225 1.01607 0.93120 1.21069 0.93220 0.93249 0.99200 1.20981 0.95992 1.03080 0.97165 1.20759 0.99236 0.98787 0.93366 1.19862 0.92677 1.03615 0.99825 1.18233 0.92641 0.99303 0.91383 1.20956 0.93336 0.97824 0.99464 0.91160 0.91294 0.91451 0.86061 0.85872 0.85991 0.88287 0.88835 0.81229 0.88197 0.79958 0.91604 0.83823 0.86115 0.86356 0.87261 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.11 -0.95 9.70 -39.58 -0.38 -1.33 16 4 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 5 C -0.11 -0.88 9.70 -39.59 -0.38 -1.26 16 6 C -0.11 -0.97 5.46 -104.62 -0.57 -1.54 16 7 C 0.15 1.22 6.05 -5.19 -0.03 1.19 16 8 N -0.46 -5.50 2.70 -114.89 -0.31 -5.81 16 9 C 0.06 0.75 11.28 -16.05 -0.18 0.57 16 10 C -0.11 -1.88 6.15 -104.57 -0.64 -2.53 16 11 C 0.05 0.99 10.78 -16.54 -0.18 0.81 16 12 N -0.20 -4.61 9.68 31.05 0.30 -4.31 16 13 N -0.59 -14.73 6.26 28.73 0.18 -14.55 16 14 C 0.56 16.69 7.62 -15.70 -0.12 16.57 16 15 O -0.56 -18.90 15.17 4.82 0.07 -18.83 16 16 C -0.54 -15.17 9.20 -38.35 -0.35 -15.53 16 17 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 18 C 0.09 2.43 5.49 -17.36 -0.10 2.34 16 19 N -0.74 -22.11 11.68 55.55 0.65 -21.46 16 20 Si 0.92 19.73 29.56 -169.99 -5.02 14.70 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 C -0.07 -1.35 6.23 -104.92 -0.65 -2.00 16 25 C -0.05 -0.95 9.77 -39.30 -0.38 -1.33 16 26 C -0.15 -2.48 10.04 -39.55 -0.40 -2.87 16 27 C -0.10 -1.38 10.02 -39.51 -0.40 -1.78 16 28 C -0.14 -1.81 9.95 -39.38 -0.39 -2.21 16 29 C 0.09 1.30 6.78 -83.86 -0.57 0.73 16 30 C -0.10 -0.88 9.36 -39.58 -0.37 -1.25 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.10 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.10 1.52 8.04 -52.49 -0.42 1.09 16 41 H 0.37 7.66 8.62 -182.60 -1.57 6.09 16 42 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 43 H 0.14 3.31 7.15 -52.49 -0.38 2.93 16 44 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.11 1.10 6.91 -52.49 -0.36 0.74 16 47 H 0.12 0.99 6.91 -52.48 -0.36 0.63 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -38.03 408.46 -12.01 -50.04 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.28 Total: 8.62 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -6.76 Total: -14.54 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.82 Total: -46.15 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.07 Total: -18.83 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -38.03 -12.01 -50.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059140331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.973 kcal (2) G-P(sol) polarization free energy of solvation -38.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds