Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.99579 * 2 1 4 4 C 1.38219 * 119.99558 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99947 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00379 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00340 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46990 * 89.99993 * 7 6 5 9 9 C 1.34522 * 124.61812 * 264.97516 * 8 7 6 10 10 C 1.39115 * 109.43203 * 180.02562 * 9 8 7 11 11 C 1.41525 * 126.96055 * 179.97438 * 10 9 8 12 12 N 1.31261 * 119.99947 * 180.02562 * 11 10 9 13 13 N 1.40095 * 119.99972 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00018 * 180.02562 * 13 12 11 15 15 O 1.22107 * 119.99844 * 359.97438 * 14 13 12 16 16 C 1.39725 * 120.00225 * 180.02562 * 14 13 12 17 17 H 1.07999 * 119.99757 * 359.97438 * 16 14 13 18 18 C 1.40036 * 120.00142 * 179.97438 * 16 14 13 19 19 N 1.30698 * 120.00139 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00039 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47096 * 89.99845 * 20 18 16 22 22 H 1.48502 * 109.47276 * 210.00135 * 20 18 16 23 23 H 1.48504 * 109.47103 * 330.00025 * 20 18 16 24 24 C 1.47438 * 106.07774 * 0.25982 * 10 9 8 25 25 C 1.39318 * 133.91016 * 179.74096 * 24 10 9 26 26 C 1.37922 * 119.65948 * 180.02562 * 25 24 10 27 27 C 1.38627 * 120.24665 * 359.97385 * 26 25 24 28 28 C 1.38034 * 120.64831 * 359.63188 * 27 26 25 29 29 C 1.38253 * 124.61887 * 84.97824 * 8 7 6 30 30 C 1.38212 * 119.99927 * 180.27265 * 2 1 3 31 31 H 1.09005 * 109.47206 * 89.99701 * 1 2 3 32 32 H 1.09001 * 109.47364 * 209.99865 * 1 2 3 33 33 H 1.09003 * 109.47194 * 330.00037 * 1 2 3 34 34 H 1.07998 * 120.00374 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00123 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.00121 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46783 * 329.99841 * 7 6 5 38 38 H 1.08999 * 109.46814 * 210.00015 * 7 6 5 39 39 H 1.08001 * 125.28326 * 359.97438 * 9 8 7 40 40 H 1.07999 * 119.99989 * 0.02568 * 11 10 9 41 41 H 0.96998 * 119.99958 * 359.97438 * 13 12 11 42 42 H 0.97005 * 120.00119 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.16848 * 0.02562 * 25 24 10 44 44 H 1.08002 * 119.87588 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.67311 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.01088 * 179.85598 * 28 27 26 47 47 H 1.08003 * 120.00274 * 0.03101 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3341 -2.5020 0.0000 8 7 4.5788 -2.9252 1.3810 9 6 5.7072 -2.6738 2.0689 10 6 5.6023 -3.2176 3.3450 11 6 6.5743 -3.1705 4.3726 12 7 6.3304 -3.7336 5.5329 13 7 7.2923 -3.6866 6.5504 14 6 7.0421 -4.2653 7.7416 15 8 5.9769 -4.8301 7.9342 16 6 8.0013 -4.2179 8.7565 17 1 8.9433 -3.7179 8.5863 18 6 7.7411 -4.8187 9.9944 19 7 6.6009 -5.4233 10.2006 20 14 9.0237 -4.7560 11.3510 21 1 8.8119 -3.5399 12.1767 22 1 8.8987 -5.9632 12.2067 23 1 10.3803 -4.7149 10.7482 24 6 4.2762 -3.8589 3.4078 25 6 3.5903 -4.5655 4.3933 26 6 2.3262 -5.0505 4.1306 27 6 1.7394 -4.8365 2.8930 28 6 2.4053 -4.1310 1.9111 29 6 3.6815 -3.6375 2.1549 30 6 2.1981 -1.1969 -0.0057 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1327 0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3517 0.0000 0.0005 37 1 5.2863 -2.3715 -0.5142 38 1 3.7448 -3.2615 -0.5138 39 1 6.5623 -2.1343 1.6890 40 1 7.5166 -2.6712 4.2021 41 1 8.1387 -3.2382 6.3972 42 1 6.4208 -5.8398 11.0580 43 1 4.0461 -4.7325 5.3580 44 1 1.7912 -5.5984 4.8922 45 1 0.7489 -5.2201 2.6974 46 1 1.9393 -3.9723 0.9498 47 1 1.6581 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059140331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = 64.326368 kcal Electronic energy + Delta-G solvation = -30193.465461 eV Core-core repulsion = 26113.346288 eV Total energy + Delta-G solvation = -4080.119173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.34354 -40.23129 -39.47552 -37.97137 -37.01026 -35.03266 -34.58569 -33.56487 -32.63716 -31.54601 -30.65088 -29.87214 -28.63507 -27.81726 -26.87780 -24.22415 -23.73198 -22.95885 -22.57683 -21.82837 -21.11855 -20.45967 -19.26114 -17.94679 -17.81876 -17.54048 -17.31317 -16.89865 -16.47360 -16.27705 -16.19103 -15.86740 -15.31679 -15.06368 -14.93340 -14.77050 -14.66416 -14.53002 -14.14799 -14.04020 -13.88289 -13.49241 -13.28936 -13.22477 -13.12032 -12.85088 -12.81846 -12.70432 -12.67362 -12.53737 -12.45602 -12.02056 -11.91578 -11.83922 -11.75339 -11.00620 -10.67177 -10.62909 -9.91613 -9.78813 -9.54265 -9.50226 -9.13529 -8.39673 -8.06796 -7.06575 0.06405 0.29978 0.48933 0.64400 0.96614 1.37847 1.41074 1.57212 1.88660 2.16788 2.26710 2.51775 2.54008 2.88802 3.07102 3.70614 3.71955 3.72561 3.80286 3.84842 4.01232 4.09284 4.11938 4.20949 4.30076 4.36861 4.44035 4.48925 4.56165 4.61121 4.67484 4.78367 4.79797 4.82109 4.84379 4.97585 5.09104 5.15096 5.18261 5.29380 5.30787 5.33519 5.54434 5.57478 5.59332 5.69248 5.71664 5.84102 5.88502 5.90652 6.10735 6.11840 6.29906 6.39717 6.69260 7.13393 7.60395 8.45593 8.67862 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002026 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.790357 B =13816.115722 C =14541.439382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.103 4.103 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.146 3.854 8 N -0.449 5.449 9 C 0.133 3.867 10 C -0.196 4.196 11 C 0.107 3.893 12 N -0.286 5.286 13 N -0.601 5.601 14 C 0.545 3.455 15 O -0.622 6.622 16 C -0.563 4.563 17 H 0.093 0.907 18 C 0.027 3.973 19 N -0.802 5.802 20 Si 1.012 2.988 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.244 1.244 24 C -0.098 4.098 25 C -0.100 4.100 26 C -0.155 4.155 27 C -0.107 4.107 28 C -0.117 4.117 29 C 0.077 3.923 30 C -0.112 4.112 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.227 0.773 40 H 0.138 0.862 41 H 0.379 0.621 42 H 0.280 0.720 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.156 0.844 46 H 0.151 0.849 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 12.655 -28.818 32.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.147 4.147 5 C -0.131 4.131 6 C -0.121 4.121 7 C 0.027 3.973 8 N -0.128 5.128 9 C -0.004 4.004 10 C -0.205 4.205 11 C -0.100 4.100 12 N -0.094 5.094 13 N -0.346 5.346 14 C 0.355 3.645 15 O -0.508 6.508 16 C -0.599 4.599 17 H 0.111 0.889 18 C -0.191 4.191 19 N -0.430 5.430 20 Si 0.829 3.171 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.167 1.167 24 C -0.103 4.103 25 C -0.119 4.119 26 C -0.174 4.174 27 C -0.126 4.126 28 C -0.137 4.137 29 C -0.027 4.027 30 C -0.131 4.131 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.129 0.871 39 H 0.244 0.756 40 H 0.155 0.845 41 H 0.216 0.784 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.138 0.862 45 H 0.174 0.826 46 H 0.169 0.831 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.541 11.705 -28.198 31.448 hybrid contribution 1.340 0.467 0.934 1.699 sum -6.202 12.172 -27.264 30.495 Atomic orbital electron populations 1.20834 0.90064 1.03221 1.03069 1.20220 0.97258 0.93279 0.99540 1.21386 0.94908 0.98159 1.00064 1.21438 0.94483 0.99001 0.99788 1.21337 1.01082 0.91675 0.99017 1.20136 0.94081 0.95248 1.02601 1.21067 1.03716 0.93807 0.78743 1.43642 1.12321 1.44189 1.12648 1.22950 0.91020 0.97380 0.89059 1.18140 0.94783 1.12361 0.95241 1.22727 0.98408 0.98359 0.90536 1.75347 1.17727 1.17516 0.98850 1.47204 1.15868 1.59553 1.11984 1.16899 0.88387 0.78941 0.80305 1.90680 1.29312 1.49470 1.81312 1.20086 1.03615 1.38239 0.97958 0.88861 1.27186 0.98232 0.91547 1.02154 1.70262 1.24300 1.24202 1.24189 0.84835 0.77689 0.78906 0.75673 1.18210 1.19372 1.16733 1.19251 0.95392 1.01472 0.94199 1.20787 0.95375 0.97644 0.98141 1.21140 0.94942 1.02469 0.98863 1.21098 1.00718 0.98849 0.91930 1.20330 0.91596 1.00799 1.00956 1.18357 0.93602 1.00086 0.90615 1.21188 0.93890 0.98257 0.99738 0.89985 0.91378 0.91209 0.84941 0.84344 0.83775 0.84546 0.87085 0.75619 0.84544 0.78414 0.90988 0.89616 0.86218 0.82648 0.83112 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.10 -1.52 5.88 -19.87 -0.12 -1.63 16 3 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 4 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 5 C -0.11 -1.37 9.70 22.27 0.22 -1.15 16 6 C -0.12 -1.56 5.46 -19.86 -0.11 -1.67 16 7 C 0.15 1.48 6.05 85.63 0.52 2.00 16 8 N -0.45 -8.58 2.70 -517.40 -1.40 -9.98 16 9 C 0.13 2.69 11.28 84.49 0.95 3.64 16 10 C -0.20 -6.48 6.15 -19.83 -0.12 -6.60 16 11 C 0.11 4.03 10.78 85.59 0.92 4.95 16 12 N -0.29 -14.66 9.68 -55.69 -0.54 -15.20 16 13 N -0.60 -32.21 6.26 -181.05 -1.13 -33.34 16 14 C 0.55 35.23 7.62 84.60 0.64 35.88 16 15 O -0.62 -46.58 15.17 -5.66 -0.09 -46.67 16 16 C -0.56 -33.47 9.20 23.07 0.21 -33.26 16 17 H 0.09 4.85 7.85 -2.91 -0.02 4.83 16 18 C 0.03 1.55 5.49 85.30 0.47 2.02 16 19 N -0.80 -50.90 11.68 21.84 0.26 -50.64 16 20 Si 1.01 41.35 29.56 68.60 2.03 43.37 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.24 -9.16 7.11 99.48 0.71 -8.45 16 24 C -0.10 -3.67 6.23 -20.06 -0.12 -3.80 16 25 C -0.10 -4.35 9.77 22.45 0.22 -4.13 16 26 C -0.15 -5.41 10.04 22.29 0.22 -5.19 16 27 C -0.11 -2.75 10.02 22.31 0.22 -2.53 16 28 C -0.12 -2.69 9.95 22.40 0.22 -2.47 16 29 C 0.08 2.11 6.78 38.85 0.26 2.37 16 30 C -0.11 -1.63 9.36 22.27 0.21 -1.42 16 31 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 33 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.14 0.49 8.05 -2.39 -0.02 0.47 16 38 H 0.11 0.85 8.08 -2.39 -0.02 0.83 16 39 H 0.23 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.14 3.89 8.04 -2.91 -0.02 3.87 16 41 H 0.38 16.81 8.62 -213.33 -1.84 14.97 16 42 H 0.28 15.86 8.29 -92.70 -0.77 15.09 16 43 H 0.09 4.66 7.15 -2.91 -0.02 4.64 16 44 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 45 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 46 H 0.15 2.22 6.91 -2.91 -0.02 2.20 16 47 H 0.13 1.56 6.91 -2.91 -0.02 1.54 16 Total: -1.00 -97.95 408.46 4.27 -93.68 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -0.83 Total: 35.35 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 5.98 Total: -16.57 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -2.82 Total: -109.16 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.09 Total: -46.67 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -97.95 4.27 -93.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059140331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.002 kcal (2) G-P(sol) polarization free energy of solvation -97.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds