Wall clock time and date at job start Tue Mar 31 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35993 * 117.00338 * 2 1 4 4 C 1.38573 * 120.06742 * 359.97438 * 3 2 1 5 5 C 1.38250 * 119.99361 * 179.74617 * 4 3 2 6 6 C 1.38247 * 120.14910 * 0.54919 * 5 4 3 7 7 C 1.50702 * 119.92631 * 179.72641 * 6 5 4 8 8 H 1.08997 * 109.68846 * 189.68059 * 7 6 5 9 9 C 1.53225 * 109.58505 * 69.33632 * 7 6 5 10 10 H 1.09009 * 109.57130 * 305.71388 * 9 7 6 11 11 C 1.53072 * 109.22621 * 66.11328 * 9 7 6 12 12 C 1.53006 * 109.40915 * 59.30980 * 11 9 7 13 13 C 1.52986 * 109.52918 * 60.03595 * 12 11 9 14 14 C 1.53016 * 109.49541 * 300.13063 * 13 12 11 15 15 C 1.52978 * 109.41587 * 59.92043 * 14 13 12 16 16 O 1.42893 * 109.26860 * 59.58062 * 15 14 13 17 17 C 1.52974 * 109.61536 * 179.48709 * 15 14 13 18 18 C 1.53182 * 109.38654 * 58.97226 * 17 15 14 19 19 N 1.46919 * 109.57731 * 310.01557 * 7 6 5 20 20 C 1.36925 * 120.65165 * 353.56689 * 19 7 6 21 21 H 1.07998 * 120.00148 * 125.34365 * 20 19 7 22 22 C 1.38813 * 120.00117 * 305.34703 * 20 19 7 23 23 N 1.31618 * 120.00287 * 153.41478 * 22 20 19 24 24 Si 1.86806 * 119.99809 * 333.41395 * 22 20 19 25 25 H 1.48496 * 109.46926 * 94.37012 * 24 22 20 26 26 H 1.48498 * 109.46988 * 214.37171 * 24 22 20 27 27 H 1.48503 * 109.47037 * 334.37077 * 24 22 20 28 28 C 1.38242 * 120.14463 * 359.45079 * 6 5 4 29 29 C 1.38559 * 120.00091 * 0.27287 * 28 6 5 30 30 O 1.36001 * 120.07370 * 179.97438 * 29 28 6 31 31 C 1.42899 * 116.99712 * 0.02562 * 30 29 28 32 32 H 1.09007 * 109.47433 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47498 * 299.99881 * 1 2 3 34 34 H 1.09007 * 109.47347 * 59.99877 * 1 2 3 35 35 H 1.07996 * 120.00058 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.92154 * 180.26904 * 5 4 3 37 37 H 1.09004 * 109.48149 * 179.28927 * 11 9 7 38 38 H 1.08998 * 109.48483 * 299.31204 * 11 9 7 39 39 H 1.08997 * 109.46048 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.45504 * 300.02839 * 12 11 9 41 41 H 1.08993 * 109.46892 * 60.14617 * 13 12 11 42 42 H 1.09011 * 109.46288 * 180.13292 * 13 12 11 43 43 H 1.09003 * 109.48044 * 299.93975 * 14 13 12 44 44 H 1.09003 * 109.48426 * 179.90359 * 14 13 12 45 45 H 0.96699 * 114.00136 * 60.02774 * 16 15 14 46 46 H 1.09007 * 109.47802 * 178.94289 * 17 15 14 47 47 H 1.09004 * 109.48991 * 298.99202 * 17 15 14 48 48 H 1.09002 * 109.59114 * 174.35610 * 18 17 15 49 49 H 1.09002 * 109.59071 * 294.79943 * 18 17 15 50 50 H 0.97000 * 120.00284 * 180.02562 * 23 22 20 51 51 H 1.08004 * 119.99730 * 180.25796 * 28 6 5 52 52 H 1.09002 * 109.46454 * 180.02562 * 31 30 29 53 53 H 1.09000 * 109.47190 * 299.99531 * 31 30 29 54 54 H 1.08997 * 109.47536 * 60.00162 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9224 3.6057 0.0048 6 6 3.3028 3.6799 -0.0008 7 6 3.9836 5.0244 -0.0013 8 1 5.0512 4.8954 -0.1785 9 6 3.7667 5.7103 1.3516 10 1 2.7000 5.7545 1.5718 11 6 4.4904 4.9155 2.4415 12 6 5.9840 4.8501 2.1160 13 6 6.5565 6.2674 2.0541 14 6 5.8307 7.0644 0.9681 15 6 4.3380 7.1291 1.2968 16 8 4.1616 7.7618 2.5658 17 6 3.6097 7.9360 0.2204 18 6 3.8246 7.2737 -1.1441 19 7 3.4074 5.8675 -1.0575 20 6 2.4991 5.3532 -1.9436 21 1 1.5381 5.8296 -2.0695 22 6 2.8134 4.2193 -2.6802 23 7 1.8544 3.4266 -3.1096 24 14 4.5976 3.8185 -3.0620 25 1 5.1249 2.8826 -2.0367 26 1 4.6868 3.1858 -4.4024 27 1 5.3992 5.0685 -3.0502 28 6 4.0602 2.5234 -0.0003 29 6 3.4359 1.2864 0.0001 30 8 4.1795 0.1477 0.0001 31 6 5.6003 0.3007 0.0002 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 0.2145 2.3196 -0.0005 36 1 1.3341 4.5115 0.0087 37 1 4.3493 5.4070 3.4041 38 1 4.0832 3.9055 2.4859 39 1 6.5001 4.2839 2.8914 40 1 6.1246 4.3593 1.1529 41 1 6.4185 6.7574 3.0179 42 1 7.6201 6.2196 1.8199 43 1 5.9697 6.5752 0.0040 44 1 6.2376 8.0747 0.9254 45 1 4.5035 8.6655 2.6057 46 1 2.5437 7.9648 0.4467 47 1 4.0044 8.9518 0.1979 48 1 3.2268 7.7866 -1.8975 49 1 4.8795 7.3261 -1.4136 50 1 2.0741 2.6341 -3.6239 51 1 5.1385 2.5840 -0.0005 52 1 6.0715 -0.6822 -0.0003 53 1 5.9065 0.8505 -0.8898 54 1 5.9065 0.8504 0.8902 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059299605.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:59 Heat of formation + Delta-G solvation = -89.422850 kcal Electronic energy + Delta-G solvation = -36998.447681 eV Core-core repulsion = 32707.892865 eV Total energy + Delta-G solvation = -4290.554816 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.98840 -41.01235 -39.26230 -38.39230 -36.60799 -36.13214 -34.12857 -33.17855 -31.54965 -31.13575 -30.79031 -29.42735 -28.04759 -27.72566 -26.75523 -24.91552 -23.79592 -23.20039 -22.81058 -22.04517 -21.52315 -19.63596 -19.47882 -18.54383 -17.61542 -17.54845 -17.25779 -16.96394 -16.64749 -16.48706 -16.08830 -16.01284 -15.89694 -15.68089 -15.38412 -15.26169 -14.76415 -14.48638 -14.32830 -14.05684 -13.97361 -13.82609 -13.62288 -13.48013 -13.31743 -12.97123 -12.95607 -12.88623 -12.64463 -12.59233 -12.38032 -12.25648 -12.05108 -12.01249 -11.95756 -11.82470 -11.77301 -11.64203 -11.50380 -11.31163 -11.13501 -10.63904 -10.39520 -10.35106 -9.30087 -8.49963 -8.25856 -8.11906 -5.61696 0.55238 0.75340 1.35216 1.44058 1.50012 2.46726 2.49472 2.52183 2.92022 3.16625 3.38624 3.50361 3.81587 3.84802 3.94245 3.94393 4.13160 4.24314 4.25092 4.28826 4.33322 4.35937 4.41368 4.43088 4.45079 4.51681 4.56102 4.61121 4.64260 4.66117 4.68020 4.72457 4.74530 4.82021 4.85022 4.90925 4.95876 5.03665 5.13900 5.16095 5.23323 5.28980 5.31755 5.38540 5.42730 5.49867 5.57061 5.63657 5.64672 5.93372 5.97906 6.07617 6.23067 6.40455 6.77978 7.04638 7.16756 7.67930 8.26517 8.99341 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.010684 B = 0.005177 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.045065 B = 5407.133675 C = 6002.794034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.333 6.333 3 C 0.082 3.918 4 C -0.171 4.171 5 C -0.030 4.030 6 C -0.060 4.060 7 C 0.223 3.777 8 H 0.038 0.962 9 C -0.072 4.072 10 H 0.050 0.950 11 C -0.102 4.102 12 C -0.121 4.121 13 C -0.106 4.106 14 C -0.146 4.146 15 C 0.153 3.847 16 O -0.566 6.566 17 C -0.150 4.150 18 C 0.139 3.861 19 N -0.607 5.607 20 C -0.270 4.270 21 H 0.032 0.968 22 C 0.052 3.948 23 N -0.893 5.893 24 Si 0.878 3.122 25 H -0.248 1.248 26 H -0.321 1.321 27 H -0.272 1.272 28 C -0.164 4.164 29 C 0.059 3.941 30 O -0.331 6.331 31 C 0.022 3.978 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.386 0.614 46 H 0.050 0.950 47 H 0.088 0.912 48 H 0.054 0.946 49 H 0.030 0.970 50 H 0.254 0.746 51 H 0.129 0.871 52 H 0.124 0.876 53 H 0.039 0.961 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.327 2.262 11.548 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.247 6.247 3 C 0.037 3.963 4 C -0.189 4.189 5 C -0.049 4.049 6 C -0.061 4.061 7 C 0.118 3.882 8 H 0.055 0.945 9 C -0.093 4.093 10 H 0.068 0.932 11 C -0.140 4.140 12 C -0.159 4.159 13 C -0.143 4.143 14 C -0.183 4.183 15 C 0.113 3.887 16 O -0.373 6.373 17 C -0.189 4.189 18 C 0.014 3.986 19 N -0.332 5.332 20 C -0.399 4.399 21 H 0.049 0.951 22 C -0.151 4.151 23 N -0.532 5.532 24 Si 0.707 3.293 25 H -0.172 1.172 26 H -0.250 1.250 27 H -0.197 1.197 28 C -0.183 4.183 29 C 0.015 3.985 30 O -0.246 6.246 31 C -0.073 4.073 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.235 0.765 46 H 0.069 0.931 47 H 0.106 0.894 48 H 0.073 0.927 49 H 0.048 0.952 50 H 0.064 0.936 51 H 0.147 0.853 52 H 0.142 0.858 53 H 0.058 0.942 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.009 1.171 11.584 13.590 hybrid contribution 0.504 0.419 -1.422 1.566 sum 7.514 1.590 10.162 12.738 Atomic orbital electron populations 1.23207 0.77289 1.04992 1.01487 1.86023 1.22682 1.26351 1.89694 1.18241 0.89259 0.85202 1.03553 1.20917 0.99667 0.91394 1.06950 1.20367 0.94044 0.95899 0.94555 1.19272 0.93552 0.93784 0.99479 1.19678 0.94050 0.86963 0.87508 0.94505 1.21437 0.98941 0.93715 0.95183 0.93171 1.21399 0.95564 0.98909 0.98108 1.21587 0.95276 0.97860 1.01148 1.21403 0.98933 0.94775 0.99229 1.22268 0.94980 1.01665 0.99412 1.20823 0.93632 0.91576 0.82691 1.86505 1.84854 1.32848 1.33111 1.22578 1.00566 0.99602 0.96115 1.21199 0.97270 0.84701 0.95388 1.44402 1.50232 1.07220 1.31328 1.18014 0.94203 1.10743 1.16981 0.95086 1.25982 0.97468 0.96420 0.95249 1.70009 1.33355 1.12373 1.37428 0.86835 0.87062 0.78536 0.76909 1.17249 1.25030 1.19713 1.20784 0.99545 0.90788 1.07174 1.18144 0.88453 0.86016 1.05901 1.86044 1.19826 1.28684 1.90052 1.23226 0.77850 1.04981 1.01196 0.86012 0.91847 0.93543 0.84977 0.87577 0.91242 0.93375 0.90750 0.93450 0.90707 0.91137 0.92582 0.89808 0.76527 0.93110 0.89368 0.92692 0.95204 0.93638 0.85325 0.85752 0.94248 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 9.81 113.37 1.11 1.83 16 2 O -0.33 -13.13 10.28 -79.61 -0.82 -13.95 16 3 C 0.08 3.54 6.70 22.57 0.15 3.69 16 4 C -0.17 -7.28 9.04 22.35 0.20 -7.07 16 5 C -0.03 -1.34 6.57 22.27 0.15 -1.19 16 6 C -0.06 -2.56 1.65 -19.86 -0.03 -2.59 16 7 C 0.22 8.78 0.77 44.24 0.03 8.82 16 8 H 0.04 1.49 4.14 -2.39 -0.01 1.48 16 9 C -0.07 -2.47 1.83 -10.68 -0.02 -2.49 16 10 H 0.05 1.96 7.83 -2.38 -0.02 1.94 16 11 C -0.10 -3.05 5.12 30.62 0.16 -2.89 16 12 C -0.12 -3.12 5.64 30.59 0.17 -2.95 16 13 C -0.11 -2.35 5.77 30.60 0.18 -2.18 16 14 C -0.15 -3.61 4.27 30.59 0.13 -3.48 16 15 C 0.15 4.32 0.72 -10.79 -0.01 4.31 16 16 O -0.57 -14.01 11.54 -148.98 -1.72 -15.73 16 17 C -0.15 -4.44 5.24 30.65 0.16 -4.28 16 18 C 0.14 5.13 6.06 86.36 0.52 5.66 16 19 N -0.61 -26.61 2.16 -679.34 -1.47 -28.08 16 20 C -0.27 -14.12 6.90 84.04 0.58 -13.54 16 21 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 22 C 0.05 2.82 3.47 84.86 0.29 3.11 16 23 N -0.89 -51.39 13.74 21.65 0.30 -51.09 16 24 Si 0.88 43.71 25.59 68.60 1.76 45.47 16 25 H -0.25 -11.54 4.85 99.48 0.48 -11.06 16 26 H -0.32 -16.92 7.11 99.48 0.71 -16.21 16 27 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 28 C -0.16 -6.74 5.95 22.35 0.13 -6.61 16 29 C 0.06 2.53 6.70 22.57 0.15 2.68 16 30 O -0.33 -12.97 10.28 -79.70 -0.82 -13.79 16 31 C 0.02 0.64 9.81 113.37 1.11 1.75 16 32 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 33 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 34 H 0.05 1.43 7.66 -2.38 -0.02 1.41 16 35 H 0.13 5.12 6.30 -2.91 -0.02 5.11 16 36 H 0.11 5.10 7.15 -2.91 -0.02 5.08 16 37 H 0.07 2.00 7.65 -2.39 -0.02 1.99 16 38 H 0.05 1.55 7.32 -2.39 -0.02 1.54 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 1.36 6.02 -2.39 -0.01 1.34 16 41 H 0.07 1.54 7.66 -2.39 -0.02 1.52 16 42 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.06 1.67 5.02 -2.39 -0.01 1.66 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.39 6.14 9.04 -74.06 -0.67 5.47 16 46 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 49 H 0.03 1.07 6.73 -2.39 -0.02 1.05 16 50 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 51 H 0.13 4.87 5.49 -2.91 -0.02 4.85 16 52 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 53 H 0.04 1.20 7.66 -2.39 -0.02 1.18 16 54 H 0.06 1.65 7.66 -2.39 -0.02 1.63 16 Total: -1.00 -66.68 386.97 2.43 -64.26 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.02 Total: 30.33 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.18 Total: -17.42 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.17 Total: -79.16 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -3.36 Total: -43.46 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.76 Total: 45.47 kcal Total: -66.68 2.43 -64.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059299605.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.167 kcal (2) G-P(sol) polarization free energy of solvation -66.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds