Wall clock time and date at job start Tue Mar 31 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30598 * 1 3 3 Si 1.86802 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47309 * 270.00472 * 3 2 1 5 5 H 1.48507 * 109.46898 * 30.00286 * 3 2 1 6 6 H 1.48496 * 109.47048 * 150.00046 * 3 2 1 7 7 C 1.40213 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.40683 * 119.99604 * 0.02562 * 7 2 1 10 10 O 1.21977 * 120.00119 * 359.97438 * 9 7 2 11 11 N 1.34781 * 119.99611 * 179.97438 * 9 7 2 12 12 N 1.40096 * 119.99831 * 179.97438 * 11 9 7 13 13 C 1.30699 * 120.00003 * 179.97438 * 12 11 9 14 14 C 1.46735 * 119.99923 * 180.02562 * 13 12 11 15 15 C 1.40261 * 120.12352 * 180.02562 * 14 13 12 16 16 C 1.36588 * 119.87147 * 179.97438 * 15 14 13 17 17 C 1.39205 * 120.12784 * 0.02562 * 16 15 14 18 18 O 1.35686 * 119.87560 * 179.70297 * 17 16 15 19 19 C 1.42897 * 117.00416 * 180.02562 * 18 17 16 20 20 C 1.50692 * 109.47414 * 179.97438 * 19 18 17 21 21 O 1.21287 * 120.00134 * 0.02562 * 20 19 18 22 22 N 1.34780 * 120.00248 * 179.97438 * 20 19 18 23 23 C 1.47156 * 120.97904 * 359.72112 * 22 20 19 24 24 C 1.53709 * 108.16104 * 129.43075 * 23 22 20 25 25 O 1.42964 * 109.14942 * 52.53389 * 24 23 22 26 26 C 1.42958 * 114.17084 * 297.29297 * 25 24 23 27 27 C 1.47149 * 120.98235 * 179.97438 * 22 20 19 28 28 C 1.39204 * 120.25056 * 359.97438 * 17 16 15 29 29 C 1.36583 * 120.13416 * 359.97438 * 28 17 16 30 30 H 0.96999 * 120.00529 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99502 * 359.97438 * 11 9 7 32 32 H 1.07995 * 119.99569 * 0.02562 * 13 12 11 33 33 H 1.08000 * 120.06774 * 0.02562 * 15 14 13 34 34 H 1.08000 * 119.93955 * 180.02562 * 16 15 14 35 35 H 1.08999 * 109.47144 * 300.00210 * 19 18 17 36 36 H 1.09002 * 109.46773 * 59.99714 * 19 18 17 37 37 H 1.09004 * 109.67640 * 249.20688 * 23 22 20 38 38 H 1.08999 * 109.67940 * 9.76271 * 23 22 20 39 39 H 1.09003 * 109.66143 * 292.57020 * 24 23 22 40 40 H 1.09002 * 109.48656 * 172.39810 * 24 23 22 41 41 H 1.09003 * 109.50984 * 302.65651 * 26 25 24 42 42 H 1.08992 * 109.55737 * 182.52757 * 26 25 24 43 43 H 1.08997 * 109.68356 * 350.24141 * 27 22 20 44 44 H 1.09009 * 109.67605 * 110.79217 * 27 22 20 45 45 H 1.08001 * 119.93043 * 179.97438 * 28 17 16 46 46 H 1.08001 * 120.06884 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.4874 2.0465 -1.4001 5 1 1.4374 2.6527 0.7001 6 1 3.5375 1.4401 0.7000 7 6 2.0071 -1.2143 -0.0005 8 1 3.0870 -1.2142 -0.0010 9 6 1.3036 -2.4326 -0.0016 10 8 0.0838 -2.4325 -0.0016 11 7 1.9775 -3.5998 -0.0027 12 7 1.2770 -4.8131 -0.0032 13 6 1.9305 -5.9450 -0.0047 14 6 1.1968 -7.2157 -0.0059 15 6 1.8954 -8.4319 -0.0070 16 6 1.2073 -9.6118 -0.0075 17 6 -0.1848 -9.6087 -0.0075 18 8 -0.8632 -10.7838 -0.0141 19 6 -2.2903 -10.7090 -0.0143 20 6 -2.8662 -12.1015 -0.0227 21 8 -2.1274 -13.0634 -0.0275 22 7 -4.2024 -12.2782 -0.0237 23 6 -5.1187 -11.1267 -0.0107 24 6 -6.1436 -11.3172 -1.1402 25 8 -6.7451 -12.6081 -1.0150 26 6 -5.8291 -13.6967 -1.1550 27 6 -4.7880 -13.6281 -0.0324 28 6 -0.8834 -8.4047 -0.0064 29 6 -0.2059 -7.2188 -0.0048 30 1 -0.4851 0.8400 -0.0004 31 1 2.9475 -3.5997 -0.0031 32 1 3.0104 -5.9449 -0.0052 33 1 2.9754 -8.4356 -0.0065 34 1 1.7441 -10.5489 -0.0079 35 1 -2.6266 -10.1817 0.8784 36 1 -2.6258 -10.1720 -0.9015 37 1 -5.6317 -11.0768 0.9498 38 1 -4.5559 -10.2079 -0.1751 39 1 -5.6436 -11.2407 -2.1058 40 1 -6.9128 -10.5484 -1.0667 41 1 -5.3279 -13.6289 -2.1206 42 1 -6.3713 -14.6401 -1.0917 43 1 -4.0063 -14.3663 -0.2112 44 1 -5.2683 -13.8260 0.9259 45 1 -1.9634 -8.4084 -0.0068 46 1 -0.7490 -6.2853 -0.0036 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059436935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:00 Heat of formation + Delta-G solvation = -99.529214 kcal Electronic energy + Delta-G solvation = -30139.614172 eV Core-core repulsion = 25609.247673 eV Total energy + Delta-G solvation = -4530.366499 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76070 -40.91286 -39.64866 -39.38579 -38.49527 -36.71508 -35.96437 -34.71571 -33.17901 -32.68164 -32.19522 -30.86445 -29.88435 -28.53219 -28.03487 -25.18424 -24.69563 -23.93710 -23.00219 -22.22322 -21.28522 -20.42006 -19.60623 -19.41477 -18.34243 -17.85109 -17.63866 -17.61202 -17.55286 -17.03594 -16.51473 -16.31398 -16.18697 -15.97449 -15.79174 -15.71033 -15.17403 -15.14172 -14.92972 -14.66707 -14.45137 -14.34582 -13.85405 -13.80526 -13.51686 -13.30646 -13.07210 -12.96863 -12.88020 -12.70992 -12.68348 -12.40083 -12.03522 -12.01653 -11.90676 -11.79391 -11.30807 -11.00801 -10.99452 -10.93414 -10.07768 -9.97986 -9.93701 -9.75912 -8.65163 -8.42295 -7.09011 -0.07269 0.46521 1.28301 1.29188 1.38061 1.39836 1.57012 1.58494 2.08111 2.33380 2.36970 2.42588 2.82860 2.93161 3.20147 3.65384 3.66954 3.75308 3.81521 3.90910 3.93392 3.95278 3.99077 4.06267 4.13424 4.23102 4.31879 4.39820 4.41885 4.60128 4.63573 4.65900 4.71697 4.81132 4.88374 4.99085 5.15199 5.19544 5.20188 5.27533 5.43574 5.66133 5.69171 5.82004 6.02807 6.03542 6.06984 6.31879 6.68280 6.85729 6.96518 7.46679 8.41741 8.59500 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.001501 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.969811 B =18655.934033 C =20323.190709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.031 3.969 3 Si 1.009 2.991 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.544 3.456 10 O -0.616 6.616 11 N -0.596 5.596 12 N -0.266 5.266 13 C 0.070 3.930 14 C -0.092 4.092 15 C -0.043 4.043 16 C -0.153 4.153 17 C 0.129 3.871 18 O -0.309 6.309 19 C 0.036 3.964 20 C 0.519 3.481 21 O -0.564 6.564 22 N -0.612 5.612 23 C 0.063 3.937 24 C 0.042 3.958 25 O -0.395 6.395 26 C 0.051 3.949 27 C 0.075 3.925 28 C -0.207 4.207 29 C -0.063 4.063 30 H 0.281 0.719 31 H 0.384 0.616 32 H 0.141 0.859 33 H 0.167 0.833 34 H 0.151 0.849 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.059 0.941 40 H 0.130 0.870 41 H 0.054 0.946 42 H 0.127 0.873 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.153 0.847 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 -24.919 -1.034 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.188 4.188 3 Si 0.827 3.173 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.169 1.169 7 C -0.599 4.599 8 H 0.113 0.887 9 C 0.354 3.646 10 O -0.502 6.502 11 N -0.341 5.341 12 N -0.074 5.074 13 C -0.139 4.139 14 C -0.094 4.094 15 C -0.063 4.063 16 C -0.172 4.172 17 C 0.082 3.918 18 O -0.221 6.221 19 C -0.042 4.042 20 C 0.307 3.693 21 O -0.442 6.442 22 N -0.348 5.348 23 C -0.059 4.059 24 C -0.035 4.035 25 O -0.313 6.313 26 C -0.026 4.026 27 C -0.047 4.047 28 C -0.225 4.225 29 C -0.083 4.083 30 H 0.092 0.908 31 H 0.222 0.778 32 H 0.158 0.842 33 H 0.184 0.816 34 H 0.169 0.831 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.078 0.922 40 H 0.148 0.852 41 H 0.072 0.928 42 H 0.145 0.855 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.170 0.830 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.744 -24.935 -1.001 26.443 hybrid contribution 1.477 0.666 -0.013 1.620 sum -7.268 -24.270 -1.014 25.355 Atomic orbital electron populations 1.70171 1.09939 1.29779 1.32910 1.27136 0.95546 1.05312 0.90812 0.84857 0.78733 0.74008 0.79712 1.18278 1.19415 1.16872 1.20323 0.95793 0.90097 1.53701 0.88700 1.17169 0.87395 0.82227 0.77815 1.90648 1.15785 1.86818 1.56920 1.47290 1.07719 1.01861 1.77258 1.74894 1.28869 0.93285 1.10335 1.24599 0.98544 0.90116 1.00654 1.18631 0.92900 0.91226 1.06666 1.21075 1.01359 0.88879 0.94970 1.20339 0.90551 0.99880 1.06408 1.19441 0.92369 0.83818 0.96158 1.86045 1.19046 1.28399 1.88628 1.22742 0.80017 0.95080 1.06375 1.20408 0.82269 0.90773 0.75815 1.90730 1.59449 1.43553 1.50499 1.48147 1.04500 1.08939 1.73179 1.22918 0.92461 0.88720 1.01790 1.23253 0.97263 0.85870 0.97109 1.87975 1.35187 1.14871 1.93291 1.23046 0.91213 0.91673 0.96649 1.22412 0.97310 0.83807 1.01152 1.21067 1.01401 0.90958 1.09109 1.21044 0.94122 0.98015 0.95144 0.90820 0.77844 0.84215 0.81551 0.83108 0.86261 0.86263 0.88553 0.86589 0.92234 0.85249 0.92781 0.85500 0.89135 0.89390 0.82989 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.08 11.71 21.86 0.26 -47.82 16 2 C 0.03 1.66 5.50 85.36 0.47 2.13 16 3 Si 1.01 39.07 29.56 68.60 2.03 41.10 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 7 C -0.56 -31.55 9.26 23.35 0.22 -31.33 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.61 16 9 C 0.54 32.81 7.65 84.84 0.65 33.46 16 10 O -0.62 -43.16 15.20 -5.24 -0.08 -43.23 16 11 N -0.60 -29.13 6.26 -180.51 -1.13 -30.26 16 12 N -0.27 -12.11 10.19 -52.26 -0.53 -12.65 16 13 C 0.07 2.32 10.75 87.08 0.94 3.26 16 14 C -0.09 -2.62 5.88 -20.07 -0.12 -2.73 16 15 C -0.04 -0.89 9.76 22.38 0.22 -0.67 16 16 C -0.15 -3.22 9.93 22.12 0.22 -3.00 16 17 C 0.13 2.92 6.71 22.73 0.15 3.07 16 18 O -0.31 -7.03 9.66 -71.01 -0.69 -7.72 16 19 C 0.04 0.54 3.58 71.23 0.26 0.80 16 20 C 0.52 9.90 7.79 87.65 0.68 10.58 16 21 O -0.56 -16.02 15.97 15.98 0.26 -15.77 16 22 N -0.61 -8.07 3.01 -816.60 -2.46 -10.53 16 23 C 0.06 0.43 6.57 86.49 0.57 1.00 16 24 C 0.04 0.31 7.00 72.22 0.51 0.81 16 25 O -0.39 -4.69 10.74 -148.98 -1.60 -6.29 16 26 C 0.05 0.49 6.98 72.07 0.50 0.99 16 27 C 0.08 0.90 6.63 86.34 0.57 1.47 16 28 C -0.21 -4.76 8.97 22.11 0.20 -4.56 16 29 C -0.06 -1.88 9.54 22.38 0.21 -1.66 16 30 H 0.28 15.07 8.29 -92.71 -0.77 14.30 16 31 H 0.38 15.44 8.62 -213.32 -1.84 13.60 16 32 H 0.14 3.53 8.03 -2.91 -0.02 3.51 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.12 1.24 7.52 -2.39 -0.02 1.22 16 36 H 0.12 1.21 7.17 -2.39 -0.02 1.19 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.12 0.32 6.05 -2.39 -0.01 0.31 16 39 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 1.35 7.08 -2.39 -0.02 1.33 16 44 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.15 2.49 6.27 -2.91 -0.02 2.47 16 46 H 0.11 3.99 7.55 -2.91 -0.02 3.97 16 Total: -1.00 -92.32 395.51 1.49 -90.83 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.80 Total: 28.70 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.24 Total: 13.62 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -3.87 Total: -101.25 kcal Atomic # 8 Polarization: -70.89 SS G_CDS: -2.11 Total: -73.00 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -92.32 1.49 -90.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059436935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.698 kcal (2) G-P(sol) polarization free energy of solvation -92.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds