Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35994 * 116.99985 * 2 1 4 4 C 1.38566 * 120.07400 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.00411 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.14371 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.92718 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.67763 * 186.71649 * 7 6 5 9 9 C 1.53251 * 109.57464 * 66.39638 * 7 6 5 10 10 H 1.08995 * 109.75550 * 305.81008 * 9 7 6 11 11 C 1.53030 * 109.12261 * 65.86015 * 9 7 6 12 12 C 1.52969 * 109.56997 * 179.49381 * 11 9 7 13 13 C 1.53028 * 109.37981 * 299.88890 * 12 11 9 14 14 C 1.52967 * 109.39315 * 60.17941 * 13 12 11 15 15 C 1.53035 * 109.57984 * 299.90149 * 14 13 12 16 16 O 1.42895 * 109.49779 * 299.72983 * 15 14 13 17 17 C 1.53102 * 109.18660 * 179.74368 * 15 14 13 18 18 C 1.53168 * 109.37397 * 178.75778 * 17 15 14 19 19 N 1.46894 * 109.57173 * 307.03400 * 7 6 5 20 20 C 1.36932 * 120.66354 * 353.46767 * 19 7 6 21 21 H 1.08001 * 119.99928 * 327.43733 * 20 19 7 22 22 C 1.38814 * 120.00339 * 147.44243 * 20 19 7 23 23 N 1.31625 * 119.99289 * 342.56162 * 22 20 19 24 24 Si 1.86798 * 120.00384 * 162.56369 * 22 20 19 25 25 H 1.48497 * 109.46929 * 59.99828 * 24 22 20 26 26 H 1.48499 * 109.46807 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47161 * 299.99748 * 24 22 20 28 28 C 1.38241 * 120.14527 * 0.23297 * 6 5 4 29 29 C 1.38568 * 120.00131 * 359.48859 * 28 6 5 30 30 O 1.35993 * 120.07495 * 180.25224 * 29 28 6 31 31 C 1.42900 * 117.00115 * 0.28045 * 30 29 28 32 32 H 1.08998 * 109.47391 * 60.00419 * 1 2 3 33 33 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46894 * 299.99896 * 1 2 3 35 35 H 1.08007 * 120.00103 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.92924 * 180.02562 * 5 4 3 37 37 H 1.09005 * 109.45269 * 299.51705 * 11 9 7 38 38 H 1.08997 * 109.45828 * 59.46028 * 11 9 7 39 39 H 1.09002 * 109.48640 * 59.85597 * 12 11 9 40 40 H 1.08998 * 109.48852 * 179.89851 * 12 11 9 41 41 H 1.09003 * 109.48068 * 180.15962 * 13 12 11 42 42 H 1.09001 * 109.47815 * 300.18840 * 13 12 11 43 43 H 1.09002 * 109.44975 * 59.93794 * 14 13 12 44 44 H 1.09001 * 109.44691 * 179.89038 * 14 13 12 45 45 H 0.96703 * 114.00214 * 300.08564 * 16 15 14 46 46 H 1.09001 * 109.49271 * 298.72866 * 17 15 14 47 47 H 1.08999 * 109.49114 * 58.77420 * 17 15 14 48 48 H 1.09005 * 109.59808 * 174.52007 * 18 17 15 49 49 H 1.08997 * 109.59738 * 294.98166 * 18 17 15 50 50 H 0.96997 * 119.99351 * 180.02562 * 23 22 20 51 51 H 1.07997 * 119.99974 * 179.74883 * 28 6 5 52 52 H 1.09000 * 109.47228 * 179.97438 * 31 30 29 53 53 H 1.09001 * 109.46906 * 299.99821 * 31 30 29 54 54 H 1.09006 * 109.46870 * 59.99690 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6058 0.0000 6 6 3.3029 3.6799 0.0005 7 6 3.9836 5.0244 0.0005 8 1 5.0588 4.8914 -0.1190 9 6 3.6991 5.7439 1.3234 10 1 2.6235 5.7930 1.4922 11 6 4.3620 4.9720 2.4665 12 6 4.0950 5.6887 3.7912 13 6 4.6761 7.1031 3.7295 14 6 4.0104 7.8764 2.5900 15 6 4.2730 7.1613 1.2628 16 8 5.6808 7.0963 1.0265 17 6 3.5978 7.9389 0.1299 18 6 3.8841 7.2438 -1.2046 19 7 3.4626 5.8397 -1.1047 20 6 2.6018 5.3019 -2.0239 21 1 2.6845 4.2601 -2.2962 22 6 1.6228 6.0957 -2.6056 23 7 1.2890 7.2415 -2.0505 24 14 0.7792 5.5377 -4.1761 25 1 0.0949 4.2417 -3.9368 26 1 -0.2198 6.5556 -4.5898 27 1 1.7915 5.3721 -5.2498 28 6 4.0602 2.5234 -0.0043 29 6 3.4359 1.2864 0.0010 30 8 4.1795 0.1477 0.0014 31 6 5.6003 0.3007 0.0024 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.2145 2.3197 -0.0005 36 1 1.3341 4.5115 0.0000 37 1 3.9507 3.9635 2.5101 38 1 5.4368 4.9183 2.2930 39 1 3.0203 5.7445 3.9643 40 1 4.5662 5.1370 4.6046 41 1 4.4892 7.6144 4.6739 42 1 5.7502 7.0473 3.5526 43 1 2.9362 7.9304 2.7670 44 1 4.4223 8.8847 2.5465 45 1 6.1115 7.9606 0.9760 46 1 2.5217 7.9693 0.3006 47 1 3.9904 8.9554 0.1022 48 1 3.3264 7.7371 -2.0008 49 1 4.9516 7.2907 -1.4197 50 1 0.6047 7.7960 -2.4569 51 1 5.1385 2.5841 -0.0080 52 1 6.0716 -0.6821 0.0031 53 1 5.9071 0.8506 -0.8873 54 1 5.9059 0.8505 0.8927 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061931149.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -99.305475 kcal Electronic energy + Delta-G solvation = -35945.970193 eV Core-core repulsion = 31654.986835 eV Total energy + Delta-G solvation = -4290.983359 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.72695 -40.90459 -39.30549 -38.35387 -36.81451 -35.91331 -33.98202 -32.98005 -31.29857 -31.13674 -30.87799 -29.48126 -28.03130 -27.74842 -26.88777 -24.41716 -23.59695 -23.44240 -22.92027 -21.77305 -20.73278 -20.53143 -19.36857 -18.48837 -17.76522 -17.54052 -17.03181 -16.88310 -16.67121 -16.30025 -16.08104 -16.01206 -15.61403 -15.50869 -15.34947 -15.15267 -14.98420 -14.67490 -14.25787 -13.98523 -13.92457 -13.57163 -13.52582 -13.23452 -13.05092 -12.94100 -12.81313 -12.76447 -12.52916 -12.45706 -12.22622 -12.22014 -12.08924 -12.01883 -11.98630 -11.86255 -11.70353 -11.60162 -11.50312 -11.37588 -11.23645 -10.68703 -10.50900 -10.11018 -9.55462 -8.69880 -8.32218 -7.78214 -5.24898 0.42651 0.61085 1.43555 1.46151 1.51390 2.42127 2.44404 2.52979 2.85282 3.33911 3.52377 3.66383 3.85345 3.90824 3.95959 4.01778 4.10885 4.19139 4.30639 4.38815 4.40308 4.40554 4.43967 4.46531 4.53020 4.55039 4.59569 4.63313 4.67792 4.72256 4.74047 4.75997 4.82199 4.86314 4.96272 4.99724 5.07477 5.11466 5.17444 5.22771 5.32837 5.36238 5.42173 5.43558 5.48339 5.55378 5.63751 5.71342 5.74933 5.84107 5.85520 6.00780 6.17942 6.51928 6.70518 7.09564 7.24516 7.93394 8.49255 9.23281 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007467 B = 0.005385 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.780961 B = 5198.783187 C = 7535.944166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.079 3.921 4 C -0.183 4.183 5 C -0.070 4.070 6 C -0.063 4.063 7 C 0.223 3.777 8 H 0.034 0.966 9 C -0.066 4.066 10 H 0.050 0.950 11 C -0.101 4.101 12 C -0.115 4.115 13 C -0.105 4.105 14 C -0.139 4.139 15 C 0.153 3.847 16 O -0.560 6.560 17 C -0.138 4.138 18 C 0.170 3.830 19 N -0.594 5.594 20 C -0.231 4.231 21 H 0.049 0.951 22 C -0.032 4.032 23 N -0.911 5.911 24 Si 0.938 3.062 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.288 1.288 28 C -0.165 4.165 29 C 0.077 3.923 30 O -0.328 6.328 31 C 0.020 3.980 32 H 0.052 0.948 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.143 0.857 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.380 0.620 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.007 0.993 50 H 0.247 0.753 51 H 0.143 0.857 52 H 0.122 0.878 53 H 0.053 0.947 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.838 -5.552 11.090 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.243 6.243 3 C 0.034 3.966 4 C -0.202 4.202 5 C -0.089 4.089 6 C -0.063 4.063 7 C 0.118 3.882 8 H 0.052 0.948 9 C -0.086 4.086 10 H 0.068 0.932 11 C -0.139 4.139 12 C -0.153 4.153 13 C -0.143 4.143 14 C -0.177 4.177 15 C 0.113 3.887 16 O -0.366 6.366 17 C -0.178 4.178 18 C 0.045 3.955 19 N -0.317 5.317 20 C -0.361 4.361 21 H 0.066 0.934 22 C -0.229 4.229 23 N -0.557 5.557 24 Si 0.768 3.232 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.215 1.215 28 C -0.184 4.184 29 C 0.032 3.968 30 O -0.243 6.243 31 C -0.074 4.074 32 H 0.071 0.929 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.228 0.772 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.025 0.975 50 H 0.056 0.944 51 H 0.160 0.840 52 H 0.141 0.859 53 H 0.072 0.928 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.611 -6.468 11.022 13.957 hybrid contribution -0.978 1.045 -1.429 2.022 sum 4.633 -5.423 9.593 11.954 Atomic orbital electron populations 1.23276 0.77119 1.05304 1.01726 1.86070 1.22754 1.25911 1.89540 1.18286 0.89417 0.85209 1.03723 1.21134 1.00365 0.91117 1.07586 1.20631 0.94532 0.96407 0.97294 1.19621 0.93495 0.94530 0.98687 1.19488 0.94221 0.86924 0.87589 0.94850 1.21408 0.97944 0.93942 0.95302 0.93190 1.21424 1.00548 0.97878 0.94046 1.21518 1.00502 0.96496 0.96768 1.21398 1.00405 0.94929 0.97536 1.22177 1.00942 0.99472 0.95071 1.20922 0.80786 0.94493 0.92511 1.86490 1.20189 1.34873 1.95071 1.22393 1.00399 0.97985 0.96999 1.20621 0.94026 0.84393 0.96486 1.44302 1.52188 1.08272 1.26957 1.18959 1.07190 0.95271 1.14688 0.93361 1.25462 0.97472 0.98353 1.01566 1.70086 1.32334 1.14083 1.39170 0.85803 0.78148 0.77251 0.82044 1.20841 1.21876 1.21471 1.20973 1.00460 0.90149 1.06786 1.18194 0.88376 0.86123 1.04119 1.86077 1.20277 1.28292 1.89612 1.23283 0.77181 1.05161 1.01793 0.92945 0.85905 0.91914 0.83972 0.87475 0.93239 0.91697 0.93014 0.90748 0.90894 0.91215 0.92592 0.90595 0.77173 0.93275 0.92113 0.92346 0.97531 0.94381 0.83979 0.85947 0.92816 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.33 -10.95 10.28 -79.62 -0.82 -11.77 16 3 C 0.08 2.90 6.70 22.57 0.15 3.05 16 4 C -0.18 -6.82 9.04 22.35 0.20 -6.62 16 5 C -0.07 -2.93 7.10 22.28 0.16 -2.77 16 6 C -0.06 -2.53 2.86 -19.86 -0.06 -2.59 16 7 C 0.22 9.26 2.30 44.25 0.10 9.37 16 8 H 0.03 1.45 7.58 -2.39 -0.02 1.43 16 9 C -0.07 -2.39 1.42 -10.69 -0.02 -2.40 16 10 H 0.05 2.09 7.65 -2.39 -0.02 2.07 16 11 C -0.10 -3.06 4.85 30.59 0.15 -2.91 16 12 C -0.12 -2.87 5.93 30.59 0.18 -2.69 16 13 C -0.11 -2.39 5.78 30.59 0.18 -2.21 16 14 C -0.14 -3.69 4.89 30.60 0.15 -3.54 16 15 C 0.15 5.01 0.55 -10.73 -0.01 5.01 16 16 O -0.56 -16.87 10.46 -148.98 -1.56 -18.43 16 17 C -0.14 -5.41 5.07 30.68 0.16 -5.26 16 18 C 0.17 7.85 5.45 86.35 0.47 8.32 16 19 N -0.59 -28.68 2.95 -679.37 -2.01 -30.68 16 20 C -0.23 -12.24 6.78 84.03 0.57 -11.67 16 21 H 0.05 2.69 6.72 -2.91 -0.02 2.67 16 22 C -0.03 -1.71 4.93 84.86 0.42 -1.29 16 23 N -0.91 -50.43 11.29 21.65 0.24 -50.19 16 24 Si 0.94 44.81 29.59 68.60 2.03 46.84 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 C -0.16 -5.97 8.66 22.35 0.19 -5.77 16 29 C 0.08 2.80 6.70 22.57 0.15 2.95 16 30 O -0.33 -10.77 10.28 -79.60 -0.82 -11.59 16 31 C 0.02 0.46 9.81 113.37 1.11 1.57 16 32 H 0.05 1.24 7.66 -2.39 -0.02 1.22 16 33 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 35 H 0.14 4.61 6.30 -2.91 -0.02 4.60 16 36 H 0.11 5.14 7.29 -2.91 -0.02 5.12 16 37 H 0.05 1.56 7.41 -2.38 -0.02 1.54 16 38 H 0.06 1.97 7.71 -2.39 -0.02 1.95 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 1.55 7.70 -2.39 -0.02 1.53 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.38 8.54 9.05 -74.05 -0.67 7.87 16 46 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.06 3.09 5.75 -2.38 -0.01 3.08 16 49 H 0.01 0.31 7.82 -2.39 -0.02 0.29 16 50 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 51 H 0.14 4.54 6.20 -2.91 -0.02 4.52 16 52 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.05 1.22 7.65 -2.39 -0.02 1.20 16 54 H 0.06 1.29 7.68 -2.38 -0.02 1.27 16 Total: -1.00 -65.00 404.20 2.68 -62.32 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.23 Total: 31.37 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 5.37 Total: -17.86 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.76 Total: -80.87 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -3.20 Total: -41.79 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.00 2.68 -62.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061931149.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.988 kcal (2) G-P(sol) polarization free energy of solvation -64.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds