Wall clock time and date at job start Tue Mar 31 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35990 * 117.00539 * 2 1 4 4 C 1.38568 * 120.07096 * 0.27560 * 3 2 1 5 5 C 1.38241 * 119.99816 * 180.27601 * 4 3 2 6 6 C 1.38254 * 120.14525 * 359.72215 * 5 4 3 7 7 C 1.50701 * 119.92256 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.57717 * 304.59375 * 7 6 5 9 9 C 1.53254 * 109.57376 * 64.84698 * 7 6 5 10 10 H 1.09002 * 109.53789 * 185.55228 * 9 7 6 11 11 C 1.53022 * 109.12476 * 305.47136 * 9 7 6 12 12 C 1.52970 * 109.57275 * 179.49323 * 11 9 7 13 13 C 1.53025 * 109.37748 * 299.89287 * 12 11 9 14 14 C 1.52961 * 109.39702 * 60.17705 * 13 12 11 15 15 C 1.53032 * 109.58151 * 299.90336 * 14 13 12 16 16 O 1.42899 * 109.49638 * 299.72405 * 15 14 13 17 17 C 1.53107 * 109.19054 * 179.73997 * 15 14 13 18 18 C 1.53167 * 109.37704 * 178.75518 * 17 15 14 19 19 N 1.46892 * 109.57279 * 184.33748 * 7 6 5 20 20 C 1.36940 * 120.66328 * 113.87524 * 19 7 6 21 21 H 1.08001 * 120.00087 * 52.33371 * 20 19 7 22 22 C 1.38820 * 119.99935 * 232.33526 * 20 19 7 23 23 N 1.31618 * 119.99616 * 186.99957 * 22 20 19 24 24 Si 1.86796 * 120.00116 * 6.99772 * 22 20 19 25 25 H 1.48501 * 109.47395 * 84.05283 * 24 22 20 26 26 H 1.48497 * 109.46982 * 204.05700 * 24 22 20 27 27 H 1.48502 * 109.47142 * 324.05350 * 24 22 20 28 28 C 1.38242 * 120.14887 * 0.02562 * 6 5 4 29 29 C 1.38563 * 119.99420 * 0.02562 * 28 6 5 30 30 O 1.36002 * 120.07038 * 180.02562 * 29 28 6 31 31 C 1.42900 * 116.99680 * 7.85667 * 30 29 28 32 32 H 1.09000 * 109.47730 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47518 * 300.00519 * 1 2 3 34 34 H 1.09007 * 109.47402 * 59.99907 * 1 2 3 35 35 H 1.07998 * 120.00198 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.92516 * 179.74520 * 5 4 3 37 37 H 1.09008 * 109.45185 * 299.51939 * 11 9 7 38 38 H 1.08997 * 109.45747 * 59.48134 * 11 9 7 39 39 H 1.09001 * 109.48774 * 59.85351 * 12 11 9 40 40 H 1.08993 * 109.48949 * 179.91634 * 12 11 9 41 41 H 1.09001 * 109.48493 * 180.16160 * 13 12 11 42 42 H 1.09009 * 109.48123 * 300.20283 * 13 12 11 43 43 H 1.09006 * 109.44774 * 59.93864 * 14 13 12 44 44 H 1.09006 * 109.45285 * 179.86714 * 14 13 12 45 45 H 0.96691 * 114.00520 * 300.08831 * 16 15 14 46 46 H 1.09002 * 109.48891 * 298.73045 * 17 15 14 47 47 H 1.09007 * 109.48783 * 58.78722 * 17 15 14 48 48 H 1.09000 * 109.59742 * 174.52541 * 18 17 15 49 49 H 1.08999 * 109.59474 * 294.83173 * 18 17 15 50 50 H 0.96996 * 119.99610 * 179.97438 * 23 22 20 51 51 H 1.07994 * 120.00066 * 180.02562 * 28 6 5 52 52 H 1.09001 * 109.47370 * 53.89471 * 31 30 29 53 53 H 1.08999 * 109.47079 * 173.89682 * 31 30 29 54 54 H 1.09003 * 109.47697 * 293.89577 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3747 0.0058 5 6 1.9225 3.6056 0.0000 6 6 3.3031 3.6796 -0.0057 7 6 3.9838 5.0241 -0.0114 8 1 3.6252 5.6115 -0.8567 9 6 3.6735 5.7623 1.2953 10 1 4.0830 6.7714 1.2500 11 6 2.1565 5.8334 1.4828 12 6 1.8352 6.5577 2.7913 13 6 2.4561 5.7915 3.9614 14 6 3.9731 5.7242 3.7767 15 6 4.2988 5.0024 2.4672 16 8 3.7719 3.6748 2.5106 17 6 5.8184 4.9459 2.2883 18 6 6.1501 4.1968 0.9941 19 7 5.4369 4.8395 -0.1216 20 6 6.1117 5.2589 -1.2370 21 1 5.9953 6.2733 -1.5889 22 6 6.9452 4.3801 -1.9153 23 7 7.6985 4.8170 -2.9022 24 14 6.9977 2.5778 -1.4274 25 1 5.8895 1.8511 -2.0973 26 1 8.2970 1.9904 -1.8422 27 1 6.8486 2.4591 0.0454 28 6 4.0604 2.5231 -0.0063 29 6 3.4359 1.2862 -0.0016 30 8 4.1794 0.1474 -0.0015 31 6 5.5908 0.2942 0.1676 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 0.2147 2.3197 0.0099 36 1 1.3344 4.5114 0.0003 37 1 1.7127 6.3770 0.6486 38 1 1.7471 4.8238 1.5171 39 1 2.2461 7.5668 2.7587 40 1 0.7545 6.6089 2.9227 41 1 2.2259 6.3046 4.8951 42 1 2.0484 4.7810 3.9915 43 1 4.3800 6.7350 3.7451 44 1 4.4166 5.1806 4.6110 45 1 4.1251 3.1347 3.2306 46 1 6.2161 5.9593 2.2341 47 1 6.2651 4.4244 3.1349 48 1 7.2241 4.2383 0.8127 49 1 5.8341 3.1574 1.0821 50 1 8.2812 4.2031 -3.3759 51 1 5.1386 2.5837 -0.0103 52 1 5.7905 0.8720 1.0700 53 1 6.0503 -0.6901 0.2573 54 1 6.0083 0.8127 -0.6955 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061931151.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:18 Heat of formation + Delta-G solvation = -50.093238 kcal Electronic energy + Delta-G solvation = -37307.296157 eV Core-core repulsion = 33018.446801 eV Total energy + Delta-G solvation = -4288.849356 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.11774 -40.82566 -39.35448 -38.09005 -37.15247 -35.93060 -34.24703 -33.24403 -31.76619 -31.07490 -30.70838 -29.98580 -28.29863 -27.94840 -26.80590 -24.71155 -23.68055 -23.36785 -22.91019 -22.12930 -21.00226 -20.59474 -19.11653 -18.85251 -17.98875 -17.56145 -17.49672 -17.02333 -16.77653 -16.48471 -16.26295 -16.07795 -15.98067 -15.60781 -15.44662 -15.04771 -14.72331 -14.61477 -14.32904 -14.24821 -13.83876 -13.78850 -13.52320 -13.42354 -13.30277 -13.20601 -13.08809 -12.79645 -12.56476 -12.51114 -12.33666 -12.16438 -12.08457 -11.95601 -11.93009 -11.67580 -11.59388 -11.45815 -11.28547 -11.19626 -10.94913 -10.70368 -10.59298 -10.25912 -9.29729 -8.56184 -8.42152 -8.20450 -5.87403 0.56528 0.67774 1.14474 1.28577 1.33002 2.32516 2.39082 2.51097 2.95451 3.07320 3.25177 3.50945 3.83775 3.88422 3.97985 3.98595 4.04638 4.09013 4.15788 4.22983 4.26862 4.34768 4.41394 4.45523 4.47416 4.48440 4.58206 4.64801 4.65306 4.69649 4.72275 4.75313 4.77476 4.83302 4.90405 4.95760 5.00702 5.06941 5.10188 5.13896 5.21049 5.30855 5.38445 5.40141 5.42284 5.46609 5.56765 5.58162 5.76311 5.90156 5.93900 5.95494 6.18049 6.25360 6.75353 7.01536 7.10584 7.53487 8.09554 8.92945 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007505 B = 0.007253 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3729.855512 B = 3859.762204 C = 6211.219244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.073 3.927 4 C -0.168 4.168 5 C -0.118 4.118 6 C -0.049 4.049 7 C 0.208 3.792 8 H 0.057 0.943 9 C -0.067 4.067 10 H 0.066 0.934 11 C -0.128 4.128 12 C -0.114 4.114 13 C -0.107 4.107 14 C -0.135 4.135 15 C 0.155 3.845 16 O -0.544 6.544 17 C -0.156 4.156 18 C 0.123 3.877 19 N -0.604 5.604 20 C -0.254 4.254 21 H 0.035 0.965 22 C -0.014 4.014 23 N -0.954 5.954 24 Si 0.925 3.075 25 H -0.296 1.296 26 H -0.310 1.310 27 H -0.205 1.205 28 C -0.168 4.168 29 C 0.057 3.943 30 O -0.327 6.327 31 C 0.010 3.990 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.371 0.629 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.038 0.962 49 H 0.052 0.948 50 H 0.261 0.739 51 H 0.143 0.857 52 H 0.067 0.933 53 H 0.129 0.871 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.776 -3.896 16.184 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.028 3.972 4 C -0.186 4.186 5 C -0.136 4.136 6 C -0.051 4.051 7 C 0.101 3.899 8 H 0.076 0.924 9 C -0.086 4.086 10 H 0.085 0.915 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.173 4.173 15 C 0.114 3.886 16 O -0.349 6.349 17 C -0.195 4.195 18 C -0.001 4.001 19 N -0.327 5.327 20 C -0.385 4.385 21 H 0.053 0.947 22 C -0.211 4.211 23 N -0.597 5.597 24 Si 0.757 3.243 25 H -0.225 1.225 26 H -0.239 1.239 27 H -0.130 1.130 28 C -0.186 4.186 29 C 0.013 3.987 30 O -0.242 6.242 31 C -0.084 4.084 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.218 0.782 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.159 0.841 52 H 0.085 0.915 53 H 0.147 0.853 54 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -14.927 -4.072 15.515 21.911 hybrid contribution 1.394 -0.465 -0.416 1.527 sum -13.532 -4.537 15.100 20.778 Atomic orbital electron populations 1.23283 0.76884 1.05122 1.02109 1.86084 1.23041 1.26407 1.89735 1.18305 0.88636 0.85871 1.04382 1.21148 1.00442 0.90524 1.06530 1.21128 0.93510 0.97960 1.01009 1.20136 0.93593 0.95096 0.96291 1.19693 0.82659 0.91251 0.96253 0.92442 1.21375 0.96947 0.97297 0.93028 0.91527 1.22154 0.93948 1.02616 0.97828 1.21508 1.00773 0.98555 0.94271 1.21382 0.94256 1.00864 0.97918 1.22149 0.97602 1.00904 0.96665 1.20833 0.90270 0.83309 0.94162 1.86759 1.69155 1.23564 1.55445 1.22661 0.97724 1.01199 0.97939 1.21892 0.94820 0.95741 0.87648 1.44264 1.02014 1.70803 1.15620 1.18554 1.22762 0.94256 1.02891 0.94699 1.26583 0.97737 1.01942 0.94814 1.69915 1.28281 1.36612 1.24910 0.86922 0.74536 0.80833 0.82027 1.22549 1.23869 1.13035 1.21631 1.01705 0.90841 1.04391 1.18619 0.89110 0.86036 1.04941 1.86023 1.19655 1.29574 1.88918 1.23715 0.79181 1.05299 1.00199 0.86756 0.91468 0.92143 0.82345 0.83073 0.92050 0.88791 0.92651 0.90886 0.91298 0.91697 0.91817 0.90727 0.78183 0.92318 0.90062 0.94353 0.93094 0.93006 0.84055 0.91489 0.85257 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.34 -10.73 10.28 -79.56 -0.82 -11.55 16 3 C 0.07 2.53 6.70 22.57 0.15 2.68 16 4 C -0.17 -4.84 9.04 22.35 0.20 -4.63 16 5 C -0.12 -3.61 7.24 22.27 0.16 -3.45 16 6 C -0.05 -1.81 3.20 -19.86 -0.06 -1.88 16 7 C 0.21 8.10 2.68 44.26 0.12 8.22 16 8 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 9 C -0.07 -2.02 1.93 -10.69 -0.02 -2.04 16 10 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 11 C -0.13 -3.07 3.50 30.59 0.11 -2.96 16 12 C -0.11 -2.17 5.93 30.59 0.18 -1.99 16 13 C -0.11 -1.92 5.78 30.59 0.18 -1.74 16 14 C -0.14 -2.73 4.89 30.59 0.15 -2.58 16 15 C 0.16 4.07 0.55 -10.73 -0.01 4.07 16 16 O -0.54 -14.28 7.66 -148.98 -1.14 -15.42 16 17 C -0.16 -4.74 5.07 30.69 0.16 -4.59 16 18 C 0.12 4.87 3.31 86.30 0.29 5.15 16 19 N -0.60 -27.50 1.70 -678.72 -1.15 -28.65 16 20 C -0.25 -14.42 9.80 84.03 0.82 -13.60 16 21 H 0.04 2.23 8.06 -2.91 -0.02 2.20 16 22 C -0.01 -0.84 5.40 84.86 0.46 -0.38 16 23 N -0.95 -60.75 13.97 21.65 0.30 -60.45 16 24 Si 0.93 46.15 20.10 68.60 1.38 47.53 16 25 H -0.30 -15.64 6.56 99.48 0.65 -14.99 16 26 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 27 H -0.21 -8.72 2.82 99.48 0.28 -8.44 16 28 C -0.17 -6.79 5.43 22.35 0.12 -6.67 16 29 C 0.06 2.28 6.68 22.57 0.15 2.43 16 30 O -0.33 -12.99 10.28 -79.70 -0.82 -13.81 16 31 C 0.01 0.36 9.03 113.37 1.02 1.38 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.07 7.65 -2.39 -0.02 1.05 16 34 H 0.06 1.04 7.68 -2.38 -0.02 1.02 16 35 H 0.16 3.31 6.30 -2.91 -0.02 3.29 16 36 H 0.15 3.84 5.50 -2.91 -0.02 3.82 16 37 H 0.06 1.41 7.78 -2.38 -0.02 1.39 16 38 H 0.09 2.33 4.19 -2.39 -0.01 2.32 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.24 7.70 -2.38 -0.02 1.22 16 43 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.37 7.61 9.05 -74.06 -0.67 6.94 16 46 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.04 1.67 6.72 -2.39 -0.02 1.65 16 49 H 0.05 2.01 3.19 -2.39 -0.01 2.00 16 50 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 51 H 0.14 6.02 0.01 -2.91 0.00 6.02 16 52 H 0.07 2.12 6.89 -2.39 -0.02 2.10 16 53 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 54 H 0.02 0.87 2.37 -2.39 -0.01 0.87 16 Total: -1.00 -74.37 367.20 2.84 -71.53 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.20 Total: 31.89 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 5.29 Total: -21.07 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -0.85 Total: -89.10 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -2.78 Total: -40.78 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.38 Total: 47.53 kcal Total: -74.37 2.84 -71.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061931151.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.433 kcal (2) G-P(sol) polarization free energy of solvation -74.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds