Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47382 * 2 1 4 4 N 1.46491 * 109.47515 * 120.00457 * 2 1 3 5 5 C 1.34750 * 124.75871 * 120.01302 * 4 2 1 6 6 C 1.39223 * 108.59891 * 179.70086 * 5 4 2 7 7 C 1.44933 * 142.28039 * 179.39140 * 6 5 4 8 8 C 1.34852 * 117.95040 * 180.57092 * 7 6 5 9 9 C 1.46726 * 126.61358 * 180.25156 * 8 7 6 10 10 O 1.21691 * 120.00787 * 8.46981 * 9 8 7 11 11 N 1.34785 * 119.99605 * 188.46600 * 9 8 7 12 12 C 1.47082 * 120.87989 * 12.11024 * 11 9 8 13 13 C 1.53691 * 108.28030 * 128.75097 * 12 11 9 14 14 N 1.46908 * 109.25497 * 54.07951 * 13 12 11 15 15 C 1.46899 * 111.00046 * 172.61151 * 14 13 12 16 16 C 1.50699 * 109.47202 * 61.28059 * 15 14 13 17 17 H 1.07997 * 120.00101 * 357.25864 * 16 15 14 18 18 C 1.37877 * 119.99941 * 177.25040 * 16 15 14 19 19 N 1.31517 * 120.00189 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99969 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47081 * 90.00059 * 20 18 16 22 22 H 1.48504 * 109.46990 * 210.00067 * 20 18 16 23 23 H 1.48501 * 109.47143 * 330.00123 * 20 18 16 24 24 C 1.46897 * 111.26589 * 296.75563 * 14 13 12 25 25 C 1.47078 * 120.88009 * 192.38184 * 11 9 8 26 26 S 1.77304 * 106.76738 * 0.26844 * 8 7 6 27 27 C 1.47118 * 104.76974 * 0.39582 * 6 5 4 28 28 C 1.34335 * 107.42718 * 359.60429 * 27 6 5 29 29 H 1.09000 * 109.46897 * 299.99767 * 1 2 3 30 30 H 1.08994 * 109.47175 * 59.99251 * 1 2 3 31 31 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46684 * 240.00652 * 2 1 3 33 33 H 1.08995 * 109.47519 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47019 * 300.00505 * 3 2 1 35 35 H 1.08997 * 109.46444 * 60.00051 * 3 2 1 36 36 H 1.08003 * 125.69833 * 359.97438 * 5 4 2 37 37 H 1.08005 * 121.02961 * 0.83431 * 7 6 5 38 38 H 1.09001 * 109.62701 * 248.51845 * 12 11 9 39 39 H 1.08999 * 109.63144 * 9.09789 * 12 11 9 40 40 H 1.09007 * 109.64899 * 294.07848 * 13 12 11 41 41 H 1.08992 * 109.42614 * 173.94524 * 13 12 11 42 42 H 1.08997 * 109.47335 * 181.28507 * 15 14 13 43 43 H 1.09005 * 109.47072 * 301.28462 * 15 14 13 44 44 H 0.97001 * 119.99988 * 180.02562 * 19 18 16 45 45 H 1.08992 * 109.49961 * 303.14328 * 24 14 13 46 46 H 1.09004 * 109.48973 * 183.06289 * 24 14 13 47 47 H 1.08997 * 109.62916 * 350.90125 * 25 11 9 48 48 H 1.08997 * 109.62883 * 111.48329 * 25 11 9 49 49 H 1.07996 * 125.64516 * 180.22714 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.7966 -1.7907 1.1840 6 6 3.0653 -2.1589 2.4995 7 6 3.7616 -3.1523 3.2925 8 6 3.6914 -3.0516 4.6354 9 6 4.3231 -3.9438 5.6141 10 8 5.1129 -4.7922 5.2433 11 7 4.0287 -3.8237 6.9239 12 6 2.8957 -2.9989 7.3704 13 6 2.0259 -3.8447 8.3138 14 7 2.8644 -4.3838 9.3929 15 6 2.0449 -5.0523 10.4124 16 6 1.3074 -6.2075 9.7858 17 1 1.4000 -6.3966 8.7265 18 6 0.5145 -7.0232 10.5649 19 7 -0.1288 -8.0317 10.0182 20 14 0.3539 -6.6960 12.3970 21 1 -0.7867 -5.7760 12.6374 22 1 0.1155 -7.9768 13.1096 23 1 1.6054 -6.0749 12.9004 24 6 3.8927 -5.2909 8.8660 25 6 4.8354 -4.5092 7.9449 26 16 2.6881 -1.6334 4.9903 27 6 2.3553 -1.1651 3.3196 28 6 1.7494 -0.3094 2.4799 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 3.1558 -2.2989 0.3013 37 1 4.3230 -3.9463 2.8225 38 1 3.2678 -2.1211 7.8989 39 1 2.3068 -2.6878 6.5076 40 1 1.5752 -4.6671 7.7580 41 1 1.2410 -3.2203 8.7405 42 1 2.6884 -5.4221 11.2106 43 1 1.3267 -4.3430 10.8238 44 1 -0.6869 -8.6053 10.5663 45 1 3.4161 -6.0931 8.3026 46 1 4.4617 -5.7153 9.6933 47 1 5.5294 -5.1972 7.4620 48 1 5.3903 -3.7739 8.5276 49 1 1.1487 0.5394 2.7714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065285477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = 61.629387 kcal Electronic energy + Delta-G solvation = -29589.379672 eV Core-core repulsion = 25644.587500 eV Total energy + Delta-G solvation = -3944.792172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.55007 -39.83057 -37.57929 -36.36942 -34.46526 -33.88873 -32.26982 -30.92471 -29.75922 -28.95644 -28.25722 -27.94852 -25.72152 -24.24244 -23.02323 -22.94111 -21.89067 -20.73310 -20.28231 -19.40209 -18.41582 -17.98396 -17.21029 -16.79078 -15.87701 -15.45961 -15.26167 -15.11904 -15.05586 -14.55649 -14.49785 -14.39210 -14.22456 -13.91809 -13.54197 -13.46032 -13.38311 -13.17003 -12.89587 -12.64481 -12.46428 -12.38523 -12.26553 -12.06277 -11.85414 -11.52313 -11.47737 -11.30535 -11.14298 -10.96807 -10.59701 -10.53091 -10.28741 -10.08603 -9.88639 -9.77947 -9.52423 -9.41432 -8.60349 -8.46621 -8.24861 -7.28055 -7.17332 -6.10397 -4.11168 0.74239 1.35165 2.05305 2.13966 2.64144 2.69687 3.15388 3.27602 3.35474 3.38454 3.44140 3.92820 4.25366 4.34562 4.38955 4.42235 4.50543 4.63098 4.86144 4.87846 4.97503 5.05614 5.06716 5.18771 5.21765 5.33569 5.38554 5.41564 5.50007 5.51348 5.57231 5.62625 5.76491 5.88395 5.96140 6.05711 6.11632 6.13413 6.37447 6.38591 6.65618 6.68271 6.74676 6.77936 6.92078 6.93103 7.03723 7.50418 7.60926 7.98304 8.00625 8.30493 8.43308 8.92030 9.51503 11.02458 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002190 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.568967 B =12782.268892 C =13592.519300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 C -0.164 4.164 4 N -0.413 5.413 5 C 0.056 3.944 6 C -0.196 4.196 7 C -0.005 4.005 8 C -0.217 4.217 9 C 0.598 3.402 10 O -0.538 6.538 11 N -0.603 5.603 12 C 0.104 3.896 13 C 0.052 3.948 14 N -0.533 5.533 15 C 0.154 3.846 16 C -0.553 4.553 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.263 1.263 24 C 0.048 3.952 25 C 0.119 3.881 26 S 0.105 5.895 27 C -0.221 4.221 28 C 0.026 3.974 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.174 0.826 37 H 0.140 0.860 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.032 0.968 43 H 0.027 0.973 44 H 0.264 0.736 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 20.613 -20.669 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.086 5.086 5 C -0.083 4.083 6 C -0.206 4.206 7 C -0.038 4.038 8 C -0.335 4.335 9 C 0.386 3.614 10 O -0.417 6.417 11 N -0.335 5.335 12 C -0.021 4.021 13 C -0.077 4.077 14 N -0.257 5.257 15 C 0.027 3.973 16 C -0.592 4.592 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.188 1.188 24 C -0.082 4.082 25 C -0.003 4.003 26 S 0.364 5.636 27 C -0.338 4.338 28 C -0.110 4.110 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.191 0.809 37 H 0.157 0.843 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.977 21.189 -19.623 29.152 hybrid contribution -0.421 -1.293 -0.800 1.578 sum 3.556 19.896 -20.423 28.733 Atomic orbital electron populations 1.22201 0.92905 1.03608 1.03579 1.21602 0.95865 0.94264 0.86022 1.22196 1.02325 0.94112 1.03575 1.44008 1.37076 1.21268 1.06200 1.21685 0.98723 0.90950 0.96914 1.20134 1.07855 0.99757 0.92823 1.20566 0.95563 0.96386 0.91284 1.23810 1.09760 1.03182 0.96743 1.16828 0.81123 0.82116 0.81351 1.90794 1.36946 1.34871 1.79124 1.47922 1.31183 1.49339 1.05082 1.22428 0.87403 0.94058 0.98230 1.22303 0.94572 0.98189 0.92641 1.62416 1.14808 1.36007 1.12496 1.20216 0.92440 0.93425 0.91205 1.21687 1.28276 1.11970 0.97217 0.90777 1.24986 0.94883 0.94606 0.98619 1.69936 1.30262 1.17164 1.36199 0.86788 0.79140 0.77761 0.85649 1.20191 1.21343 1.18760 1.22281 0.93836 0.94457 0.97582 1.21868 0.93569 0.96436 0.88441 1.84166 1.54503 1.25976 0.98993 1.23767 1.07339 1.02056 1.00621 1.20095 1.07494 1.02461 0.80924 0.91339 0.90355 0.91429 0.87894 0.91538 0.90361 0.91360 0.80906 0.84267 0.90459 0.89300 0.92999 0.90045 0.94989 0.95528 0.92667 0.93110 0.90226 0.89160 0.91073 0.81459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 9.23 37.16 0.34 -0.27 16 2 C 0.12 0.52 3.50 -67.93 -0.24 0.28 16 3 C -0.16 -0.55 9.22 37.16 0.34 -0.21 16 4 N -0.41 -3.21 2.57 -109.27 -0.28 -3.49 16 5 C 0.06 0.52 11.40 -15.90 -0.18 0.34 16 6 C -0.20 -2.50 6.99 -103.28 -0.72 -3.22 16 7 C -0.01 -0.07 9.99 -38.14 -0.38 -0.45 16 8 C -0.22 -3.45 6.23 -37.36 -0.23 -3.68 16 9 C 0.60 10.83 7.62 -12.83 -0.10 10.73 16 10 O -0.54 -11.05 16.38 5.20 0.09 -10.96 16 11 N -0.60 -10.44 3.00 -173.70 -0.52 -10.96 16 12 C 0.10 1.66 5.61 -3.37 -0.02 1.64 16 13 C 0.05 0.99 5.20 -3.46 -0.02 0.98 16 14 N -0.53 -10.87 4.83 -235.46 -1.14 -12.01 16 15 C 0.15 3.61 4.18 -4.98 -0.02 3.59 16 16 C -0.55 -15.28 8.31 -34.44 -0.29 -15.57 16 17 H 0.07 2.27 6.11 -52.49 -0.32 1.94 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 20 Si 0.88 21.23 27.52 -169.99 -4.68 16.55 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.26 -6.08 6.46 56.52 0.37 -5.71 16 24 C 0.05 0.93 5.21 -3.70 -0.02 0.91 16 25 C 0.12 2.01 6.62 -3.60 -0.02 1.98 16 26 S 0.10 1.43 18.48 -107.50 -1.99 -0.56 16 27 C -0.22 -2.78 7.62 -37.36 -0.28 -3.06 16 28 C 0.03 0.25 10.17 -16.80 -0.17 0.08 16 29 H 0.07 0.28 7.88 -51.93 -0.41 -0.13 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.28 8.03 -51.93 -0.42 -0.14 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.07 0.26 7.88 -51.93 -0.41 -0.15 16 36 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.14 1.92 8.04 -52.48 -0.42 1.50 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.35 3.55 -20.51 -0.07 1.28 16 40 H 0.05 1.15 6.75 -51.93 -0.35 0.80 16 41 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 42 H 0.03 0.76 6.96 -51.93 -0.36 0.40 16 43 H 0.03 0.62 7.69 -51.93 -0.40 0.22 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 46 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 47 H 0.09 1.53 7.06 -51.93 -0.37 1.17 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -34.40 396.37 -11.16 -45.56 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.28 Total: 0.52 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.11 Total: -3.96 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -1.17 Total: -53.12 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.68 Total: 16.55 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.99 Total: -0.56 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.40 -11.16 -45.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065285477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.189 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds