Wall clock time and date at job start Tue Mar 31 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47382 * 2 1 4 4 N 1.46491 * 109.47515 * 120.00457 * 2 1 3 5 5 C 1.34750 * 124.75871 * 120.01302 * 4 2 1 6 6 C 1.39223 * 108.59891 * 179.70086 * 5 4 2 7 7 C 1.44933 * 142.28039 * 179.39140 * 6 5 4 8 8 C 1.34852 * 117.95040 * 180.57092 * 7 6 5 9 9 C 1.46726 * 126.61358 * 180.25156 * 8 7 6 10 10 O 1.21691 * 120.00787 * 8.46981 * 9 8 7 11 11 N 1.34785 * 119.99605 * 188.46600 * 9 8 7 12 12 C 1.47082 * 120.87989 * 12.11024 * 11 9 8 13 13 C 1.53691 * 108.28030 * 128.75097 * 12 11 9 14 14 N 1.46908 * 109.25497 * 54.07951 * 13 12 11 15 15 C 1.46899 * 111.00046 * 172.61151 * 14 13 12 16 16 C 1.50699 * 109.47202 * 61.28059 * 15 14 13 17 17 H 1.07997 * 120.00101 * 357.25864 * 16 15 14 18 18 C 1.37877 * 119.99941 * 177.25040 * 16 15 14 19 19 N 1.31517 * 120.00189 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99969 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47081 * 90.00059 * 20 18 16 22 22 H 1.48504 * 109.46990 * 210.00067 * 20 18 16 23 23 H 1.48501 * 109.47143 * 330.00123 * 20 18 16 24 24 C 1.46897 * 111.26589 * 296.75563 * 14 13 12 25 25 C 1.47078 * 120.88009 * 192.38184 * 11 9 8 26 26 S 1.77304 * 106.76738 * 0.26844 * 8 7 6 27 27 C 1.47118 * 104.76974 * 0.39582 * 6 5 4 28 28 C 1.34335 * 107.42718 * 359.60429 * 27 6 5 29 29 H 1.09000 * 109.46897 * 299.99767 * 1 2 3 30 30 H 1.08994 * 109.47175 * 59.99251 * 1 2 3 31 31 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46684 * 240.00652 * 2 1 3 33 33 H 1.08995 * 109.47519 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47019 * 300.00505 * 3 2 1 35 35 H 1.08997 * 109.46444 * 60.00051 * 3 2 1 36 36 H 1.08003 * 125.69833 * 359.97438 * 5 4 2 37 37 H 1.08005 * 121.02961 * 0.83431 * 7 6 5 38 38 H 1.09001 * 109.62701 * 248.51845 * 12 11 9 39 39 H 1.08999 * 109.63144 * 9.09789 * 12 11 9 40 40 H 1.09007 * 109.64899 * 294.07848 * 13 12 11 41 41 H 1.08992 * 109.42614 * 173.94524 * 13 12 11 42 42 H 1.08997 * 109.47335 * 181.28507 * 15 14 13 43 43 H 1.09005 * 109.47072 * 301.28462 * 15 14 13 44 44 H 0.97001 * 119.99988 * 180.02562 * 19 18 16 45 45 H 1.08992 * 109.49961 * 303.14328 * 24 14 13 46 46 H 1.09004 * 109.48973 * 183.06289 * 24 14 13 47 47 H 1.08997 * 109.62916 * 350.90125 * 25 11 9 48 48 H 1.08997 * 109.62883 * 111.48329 * 25 11 9 49 49 H 1.07996 * 125.64516 * 180.22714 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.7966 -1.7907 1.1840 6 6 3.0653 -2.1589 2.4995 7 6 3.7616 -3.1523 3.2925 8 6 3.6914 -3.0516 4.6354 9 6 4.3231 -3.9438 5.6141 10 8 5.1129 -4.7922 5.2433 11 7 4.0287 -3.8237 6.9239 12 6 2.8957 -2.9989 7.3704 13 6 2.0259 -3.8447 8.3138 14 7 2.8644 -4.3838 9.3929 15 6 2.0449 -5.0523 10.4124 16 6 1.3074 -6.2075 9.7858 17 1 1.4000 -6.3966 8.7265 18 6 0.5145 -7.0232 10.5649 19 7 -0.1288 -8.0317 10.0182 20 14 0.3539 -6.6960 12.3970 21 1 -0.7867 -5.7760 12.6374 22 1 0.1155 -7.9768 13.1096 23 1 1.6054 -6.0749 12.9004 24 6 3.8927 -5.2909 8.8660 25 6 4.8354 -4.5092 7.9449 26 16 2.6881 -1.6334 4.9903 27 6 2.3553 -1.1651 3.3196 28 6 1.7494 -0.3094 2.4799 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 3.1558 -2.2989 0.3013 37 1 4.3230 -3.9463 2.8225 38 1 3.2678 -2.1211 7.8989 39 1 2.3068 -2.6878 6.5076 40 1 1.5752 -4.6671 7.7580 41 1 1.2410 -3.2203 8.7405 42 1 2.6884 -5.4221 11.2106 43 1 1.3267 -4.3430 10.8238 44 1 -0.6869 -8.6053 10.5663 45 1 3.4161 -6.0931 8.3026 46 1 4.4617 -5.7153 9.6933 47 1 5.5294 -5.1972 7.4620 48 1 5.3903 -3.7739 8.5276 49 1 1.1487 0.5394 2.7714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065285477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:24 Heat of formation + Delta-G solvation = 39.402822 kcal Electronic energy + Delta-G solvation = -29590.343488 eV Core-core repulsion = 25644.587500 eV Total energy + Delta-G solvation = -3945.755988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.28612 -41.25352 -39.13470 -37.06081 -36.10375 -34.73009 -34.33417 -32.34375 -30.70853 -30.39593 -29.38595 -28.19489 -27.40617 -25.50090 -24.47888 -23.73739 -23.48705 -21.96283 -21.16719 -20.63984 -19.59205 -19.08952 -18.71754 -18.19373 -17.21390 -16.57823 -16.53052 -16.10228 -16.05384 -15.97328 -15.90877 -15.75336 -15.36549 -14.99913 -14.75960 -14.55379 -14.42691 -14.22375 -14.02882 -13.90009 -13.70161 -13.22874 -13.11445 -13.07325 -13.00987 -12.69469 -12.60992 -12.47672 -12.34334 -12.20062 -12.03389 -11.98697 -11.93810 -11.84845 -11.67785 -11.20423 -11.02975 -10.79309 -10.34964 -9.86793 -9.20706 -9.07045 -8.31290 -8.13188 -6.37915 -0.32225 0.35379 1.21851 1.25326 1.37746 1.39668 1.51532 1.58993 1.82870 1.97520 2.21568 2.34807 3.03739 3.20189 3.28877 3.59157 3.81681 3.86929 3.90987 3.95174 4.03426 4.12507 4.15489 4.22951 4.30307 4.45080 4.46135 4.54392 4.61215 4.67732 4.69726 4.77258 4.81933 4.83265 4.92657 4.95559 5.01079 5.04483 5.06398 5.12631 5.14297 5.22616 5.25720 5.40382 5.47325 5.48176 5.91691 6.00708 6.22619 6.25586 6.27834 6.31875 6.69020 6.91935 7.29044 8.85490 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002190 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.568967 B =12782.268892 C =13592.519300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.120 3.880 3 C -0.162 4.162 4 N -0.403 5.403 5 C 0.084 3.916 6 C -0.240 4.240 7 C 0.007 3.993 8 C -0.260 4.260 9 C 0.594 3.406 10 O -0.576 6.576 11 N -0.609 5.609 12 C 0.114 3.886 13 C 0.054 3.946 14 N -0.521 5.521 15 C 0.159 3.841 16 C -0.551 4.551 17 H 0.025 0.975 18 C 0.006 3.994 19 N -0.951 5.951 20 Si 0.956 3.044 21 H -0.264 1.264 22 H -0.288 1.288 23 H -0.240 1.240 24 C 0.052 3.948 25 C 0.126 3.874 26 S 0.107 5.893 27 C -0.247 4.247 28 C 0.036 3.964 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.209 0.791 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.008 0.992 41 H 0.096 0.904 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.266 0.734 45 H 0.004 0.996 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 24.259 -21.570 32.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 C -0.219 4.219 4 N -0.074 5.074 5 C -0.058 4.058 6 C -0.249 4.249 7 C -0.026 4.026 8 C -0.378 4.378 9 C 0.384 3.616 10 O -0.458 6.458 11 N -0.340 5.340 12 C -0.011 4.011 13 C -0.076 4.076 14 N -0.244 5.244 15 C 0.032 3.968 16 C -0.590 4.590 17 H 0.043 0.957 18 C -0.191 4.191 19 N -0.591 5.591 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.163 1.163 24 C -0.077 4.077 25 C 0.004 3.996 26 S 0.365 5.635 27 C -0.364 4.364 28 C -0.101 4.101 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.154 0.846 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.026 0.974 41 H 0.114 0.886 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.022 0.978 46 H 0.109 0.891 47 H 0.104 0.896 48 H 0.119 0.881 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.770 24.886 -20.531 32.481 hybrid contribution -0.434 -2.362 -0.872 2.555 sum 3.337 22.524 -21.403 31.250 Atomic orbital electron populations 1.22207 0.92315 1.03074 1.04522 1.21987 0.96256 0.94778 0.85015 1.22195 1.01787 0.93424 1.04517 1.44420 1.35580 1.20516 1.06864 1.22266 0.96547 0.90272 0.96705 1.20263 1.09817 1.00347 0.94473 1.20772 0.94374 0.96248 0.91254 1.23562 1.12487 1.04906 0.96814 1.17180 0.80690 0.81912 0.81794 1.90747 1.38776 1.36595 1.79728 1.48035 1.31482 1.49379 1.05116 1.22434 0.86711 0.93717 0.98222 1.22333 0.95431 0.97346 0.92448 1.62468 1.14350 1.35044 1.12529 1.20129 0.92635 0.92163 0.91889 1.21898 1.28483 1.13428 0.95208 0.95711 1.26030 0.94417 0.94162 1.04525 1.70112 1.31739 1.18802 1.38494 0.85584 0.80352 0.77836 0.78370 1.18874 1.21405 1.16284 1.22262 0.93919 0.93626 0.97886 1.21815 0.92816 0.96865 0.88081 1.83707 1.54289 1.24994 1.00502 1.23909 1.09120 1.03491 0.99874 1.20516 1.06262 1.02132 0.81147 0.91770 0.88136 0.92663 0.85602 0.92330 0.88191 0.91736 0.77394 0.84627 0.87814 0.88339 0.97385 0.88614 0.94290 0.94209 0.92559 0.97759 0.89120 0.89611 0.88083 0.78990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 9.23 71.98 0.66 0.02 16 2 C 0.12 0.53 3.50 44.99 0.16 0.69 16 3 C -0.16 -0.47 9.22 71.98 0.66 0.19 16 4 N -0.40 -4.98 2.57 -499.61 -1.28 -6.27 16 5 C 0.08 1.31 11.40 84.48 0.96 2.28 16 6 C -0.24 -5.92 6.99 -19.00 -0.13 -6.06 16 7 C 0.01 0.21 9.99 23.21 0.23 0.44 16 8 C -0.26 -8.63 6.23 23.71 0.15 -8.48 16 9 C 0.59 22.72 7.62 86.46 0.66 23.38 16 10 O -0.58 -25.18 16.38 -4.32 -0.07 -25.25 16 11 N -0.61 -21.80 3.00 -821.69 -2.47 -24.26 16 12 C 0.11 3.66 5.61 86.50 0.49 4.14 16 13 C 0.05 2.10 5.20 86.53 0.45 2.55 16 14 N -0.52 -21.35 4.83 -898.87 -4.34 -25.69 16 15 C 0.16 7.43 4.18 85.56 0.36 7.79 16 16 C -0.55 -31.73 8.31 25.60 0.21 -31.51 16 17 H 0.02 1.63 6.11 -2.91 -0.02 1.62 16 18 C 0.01 0.37 5.47 84.65 0.46 0.83 16 19 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 20 Si 0.96 43.73 27.52 68.60 1.89 45.62 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.24 -10.00 6.46 99.48 0.64 -9.35 16 24 C 0.05 2.12 5.21 86.39 0.45 2.57 16 25 C 0.13 4.35 6.62 86.35 0.57 4.92 16 26 S 0.11 2.92 18.48 -56.49 -1.04 1.87 16 27 C -0.25 -5.97 7.62 23.71 0.18 -5.79 16 28 C 0.04 0.60 10.17 83.06 0.84 1.45 16 29 H 0.06 0.33 7.88 -2.39 -0.02 0.31 16 30 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.13 0.07 8.03 -2.38 -0.02 0.05 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.06 0.26 7.88 -2.39 -0.02 0.24 16 36 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.14 3.96 8.04 -2.91 -0.02 3.94 16 38 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.10 3.06 3.55 -22.37 -0.08 2.98 16 40 H 0.01 0.37 6.75 -2.38 -0.02 0.36 16 41 H 0.10 3.42 8.10 -2.39 -0.02 3.40 16 42 H 0.04 1.78 6.96 -2.39 -0.02 1.77 16 43 H 0.04 1.78 7.69 -2.38 -0.02 1.76 16 44 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 45 H 0.00 0.20 6.95 -2.39 -0.02 0.18 16 46 H 0.09 3.42 8.08 -2.38 -0.02 3.40 16 47 H 0.09 3.04 7.06 -2.39 -0.02 3.02 16 48 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 49 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -80.61 396.37 1.17 -79.43 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.82 Total: 15.41 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 7.37 Total: -0.59 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -7.79 Total: -116.50 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.07 Total: -25.25 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.89 Total: 45.62 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.04 Total: 1.87 kcal Total: -80.61 1.17 -79.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065285477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.836 kcal (2) G-P(sol) polarization free energy of solvation -80.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds