Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38307 * 119.92287 * 2 1 4 4 C 1.38081 * 120.06922 * 180.02562 * 3 2 1 5 5 C 1.38916 * 119.92926 * 359.97438 * 4 3 2 6 6 N 1.39827 * 120.07524 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99906 * 351.54210 * 6 5 4 8 8 C 1.50692 * 109.47205 * 262.87541 * 7 6 5 9 9 H 1.07998 * 120.00041 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00337 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99757 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00433 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47413 * 89.99989 * 12 10 8 14 14 H 1.48507 * 109.47429 * 209.99984 * 12 10 8 15 15 H 1.48506 * 109.47044 * 329.99986 * 12 10 8 16 16 C 1.34776 * 120.00217 * 171.54243 * 6 5 4 17 17 O 1.21520 * 119.99599 * 1.91004 * 16 6 5 18 18 C 1.48189 * 120.00239 * 181.91307 * 16 6 5 19 19 C 1.40594 * 119.75043 * 173.78017 * 18 16 6 20 20 N 1.31257 * 120.56758 * 180.02562 * 19 18 16 21 21 C 1.33787 * 119.81035 * 359.97438 * 20 19 18 22 22 C 1.40537 * 121.00125 * 179.97438 * 21 20 19 23 23 C 1.36083 * 119.75667 * 180.02562 * 22 21 20 24 24 C 1.39479 * 121.01316 * 359.97438 * 23 22 21 25 25 C 1.35992 * 120.98274 * 359.97438 * 24 23 22 26 26 C 1.40827 * 119.69735 * 359.97438 * 25 24 23 27 27 N 1.32181 * 119.74808 * 353.80170 * 18 16 6 28 28 C 1.38878 * 119.85296 * 0.27488 * 5 4 3 29 29 C 1.38125 * 119.92826 * 359.45122 * 28 5 4 30 30 C 1.50698 * 119.96819 * 180.27225 * 29 28 5 31 31 H 1.08997 * 109.47609 * 90.00543 * 1 2 3 32 32 H 1.09006 * 109.46789 * 210.00284 * 1 2 3 33 33 H 1.09000 * 109.47673 * 329.99857 * 1 2 3 34 34 H 1.07996 * 119.96739 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.03597 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.47177 * 22.87950 * 7 6 5 37 37 H 1.08999 * 109.47032 * 142.87416 * 7 6 5 38 38 H 0.97001 * 120.00082 * 179.97438 * 11 10 8 39 39 H 1.07997 * 119.71672 * 0.03948 * 19 18 16 40 40 H 1.08001 * 120.12290 * 359.97438 * 22 21 20 41 41 H 1.07994 * 119.49420 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.51272 * 179.71663 * 24 23 22 43 43 H 1.08001 * 120.15241 * 180.02562 * 25 24 23 44 44 H 1.08008 * 120.03865 * 179.72198 * 28 5 4 45 45 H 1.08994 * 109.47346 * 270.27386 * 30 29 28 46 46 H 1.09005 * 109.46671 * 30.27534 * 30 29 28 47 47 H 1.08999 * 109.46844 * 150.27536 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2022 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6722 0.0001 -0.0005 7 6 6.4046 1.2550 -0.1871 8 6 6.8084 1.3908 -1.6326 9 1 6.5453 0.6197 -2.3415 10 6 7.5128 2.5001 -2.0504 11 7 7.8318 3.4399 -1.1874 12 14 8.0126 2.6688 -3.8423 13 1 6.9417 3.3747 -4.5907 14 1 9.2748 3.4461 -3.9331 15 1 8.2189 1.3197 -4.4278 16 6 6.3461 -1.1544 0.1711 17 8 5.7390 -2.2002 0.2912 18 6 7.8274 -1.1484 0.2136 19 6 8.5212 -2.3314 0.5230 20 7 9.8330 -2.3442 0.5655 21 6 10.5177 -1.2231 0.3120 22 6 11.9224 -1.2083 0.3511 23 6 12.5932 -0.0535 0.0895 24 6 11.9080 1.1216 -0.2188 25 6 10.5492 1.1474 -0.2676 26 6 9.8192 -0.0277 -0.0039 27 7 8.4863 -0.0308 -0.0394 28 6 3.5780 -1.2017 -0.0058 29 6 2.1968 -1.1983 0.0005 30 6 1.4408 -2.5020 0.0010 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6552 2.1329 0.0004 35 1 4.1159 2.1386 -0.0010 36 1 5.7663 2.0933 0.0922 37 1 7.2959 1.2523 0.4404 38 1 8.3277 4.2201 -1.4813 39 1 7.9701 -3.2375 0.7273 40 1 12.4676 -2.1098 0.5887 41 1 13.6727 -0.0471 0.1203 42 1 12.4647 2.0254 -0.4178 43 1 10.0324 2.0647 -0.5081 44 1 4.1163 -2.1381 -0.0103 45 1 1.2581 -2.8165 -1.0264 46 1 2.0287 -3.2626 0.5148 47 1 0.4889 -2.3697 0.5152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065531526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = 95.786478 kcal Electronic energy + Delta-G solvation = -32186.457844 eV Core-core repulsion = 28107.702883 eV Total energy + Delta-G solvation = -4078.754960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26446 -40.11308 -38.37293 -36.99604 -35.78449 -34.45472 -32.86713 -32.04192 -31.53659 -30.50035 -30.24111 -27.92110 -26.70365 -26.19362 -25.15802 -24.07673 -23.23745 -22.06008 -21.63422 -21.10137 -19.24818 -18.10196 -18.01683 -16.86963 -16.51993 -16.40021 -15.82028 -15.18281 -15.04809 -14.82433 -14.65819 -14.46595 -14.28645 -14.06099 -13.85243 -13.44820 -13.42907 -13.03214 -12.76966 -12.55773 -12.49804 -12.27660 -12.04344 -11.83556 -11.72399 -11.63415 -11.58256 -11.51099 -11.28033 -11.21772 -11.04953 -11.00400 -10.59666 -10.25468 -10.21712 -10.02948 -9.20130 -8.97397 -8.73963 -8.63279 -8.33584 -8.21981 -8.18593 -7.14153 -6.20859 -4.19134 0.35278 0.69237 1.76685 1.95426 2.21940 2.76863 3.17856 3.24971 3.29062 3.41692 3.50838 4.19479 4.29626 4.32005 4.37835 4.45893 4.55658 4.93686 5.02294 5.14681 5.16813 5.20121 5.29825 5.33809 5.41562 5.46199 5.49767 5.63801 5.70565 5.73135 5.90995 5.98296 6.03296 6.05073 6.08779 6.16589 6.23108 6.27316 6.28976 6.46392 6.51658 6.61979 6.78794 6.87128 6.94835 6.98910 7.14707 7.24916 7.41603 7.54770 7.70467 7.78195 7.97119 8.03044 8.06582 8.59117 8.79102 9.38239 10.85708 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.010845 B = 0.003736 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.241780 B = 7493.720476 C = 9421.241198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.146 4.146 5 C 0.165 3.835 6 N -0.512 5.512 7 C 0.218 3.782 8 C -0.492 4.492 9 H 0.054 0.946 10 C 0.072 3.928 11 N -0.884 5.884 12 Si 0.883 3.117 13 H -0.279 1.279 14 H -0.283 1.283 15 H -0.276 1.276 16 C 0.574 3.426 17 O -0.537 6.537 18 C 0.035 3.965 19 C 0.130 3.870 20 N -0.445 5.445 21 C 0.091 3.909 22 C -0.105 4.105 23 C -0.087 4.087 24 C -0.128 4.128 25 C -0.048 4.048 26 C 0.067 3.933 27 N -0.308 5.308 28 C -0.169 4.169 29 C -0.076 4.076 30 C -0.110 4.110 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.263 0.737 39 H 0.179 0.821 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.159 0.841 44 H 0.178 0.822 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -5.234 4.109 6.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.166 4.166 5 C 0.069 3.931 6 N -0.229 5.229 7 C 0.100 3.900 8 C -0.532 4.532 9 H 0.072 0.928 10 C -0.130 4.130 11 N -0.524 5.524 12 Si 0.711 3.289 13 H -0.205 1.205 14 H -0.208 1.208 15 H -0.201 1.201 16 C 0.363 3.637 17 O -0.417 6.417 18 C -0.120 4.120 19 C -0.046 4.046 20 N -0.159 5.159 21 C -0.034 4.034 22 C -0.125 4.125 23 C -0.107 4.107 24 C -0.148 4.148 25 C -0.068 4.068 26 C -0.059 4.059 27 N -0.026 5.026 28 C -0.188 4.188 29 C -0.077 4.077 30 C -0.167 4.167 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.153 0.847 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.196 0.804 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.176 0.824 44 H 0.194 0.806 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.092 -5.486 4.180 6.898 hybrid contribution 0.400 0.513 -1.304 1.458 sum 0.309 -4.974 2.875 5.753 Atomic orbital electron populations 1.20736 0.92111 1.01980 1.01561 1.19622 0.95374 0.92927 1.04897 1.20691 0.93349 0.97047 1.00724 1.21054 0.94094 0.97469 1.03951 1.18023 0.82500 0.94325 0.98257 1.45957 1.04149 1.10815 1.61947 1.20412 0.92635 0.78055 0.98930 1.21196 1.34130 1.05060 0.92800 0.92790 1.24716 0.95629 0.95517 0.97144 1.69926 1.39318 1.09355 1.33768 0.86721 0.78305 0.78271 0.85627 1.20466 1.20840 1.20093 1.17789 0.85471 0.83340 0.77132 1.90375 1.66950 1.32126 1.52248 1.22176 0.95495 0.91765 1.02518 1.23812 0.90250 0.98328 0.92188 1.68772 1.07592 1.26698 1.12842 1.19828 0.95416 0.90260 0.97858 1.20664 0.91082 0.99089 1.01627 1.21011 1.00286 0.92399 0.96998 1.20983 0.94281 0.98531 1.00974 1.21356 0.93502 0.98000 0.93905 1.19926 0.90815 0.94505 1.00642 1.69827 1.05983 1.24403 1.02338 1.22485 0.93585 1.00095 1.02663 1.19622 0.93475 0.94375 1.00209 1.20776 0.99533 0.94537 1.01822 0.91978 0.91788 0.92305 0.86414 0.84673 0.94066 0.89745 0.92679 0.80379 0.84792 0.85216 0.85056 0.82360 0.80607 0.91681 0.91745 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.60 36.01 0.35 -0.91 16 2 C -0.13 -1.98 5.88 -104.58 -0.62 -2.59 16 3 C -0.10 -1.64 9.69 -39.61 -0.38 -2.03 16 4 C -0.15 -2.80 9.30 -39.39 -0.37 -3.17 16 5 C 0.16 3.40 6.48 -83.72 -0.54 2.86 16 6 N -0.51 -11.17 2.70 -115.68 -0.31 -11.48 16 7 C 0.22 5.10 4.52 -5.20 -0.02 5.07 16 8 C -0.49 -12.44 7.88 -34.44 -0.27 -12.71 16 9 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 10 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 11 N -0.88 -22.26 13.00 55.43 0.72 -21.54 16 12 Si 0.88 20.17 29.54 -169.99 -5.02 15.15 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 C 0.57 12.07 7.54 -12.17 -0.09 11.97 16 17 O -0.54 -11.07 12.76 5.35 0.07 -11.00 16 18 C 0.04 0.71 6.62 -82.74 -0.55 0.16 16 19 C 0.13 2.26 10.75 -16.91 -0.18 2.08 16 20 N -0.45 -7.76 10.45 -10.52 -0.11 -7.87 16 21 C 0.09 1.58 6.60 -84.70 -0.56 1.02 16 22 C -0.11 -1.46 9.98 -39.49 -0.39 -1.85 16 23 C -0.09 -1.04 9.95 -39.89 -0.40 -1.44 16 24 C -0.13 -1.75 9.95 -39.93 -0.40 -2.14 16 25 C -0.05 -0.86 9.99 -39.41 -0.39 -1.25 16 26 C 0.07 1.29 6.60 -84.79 -0.56 0.73 16 27 N -0.31 -6.52 5.04 -7.39 -0.04 -6.56 16 28 C -0.17 -3.24 8.67 -39.39 -0.34 -3.58 16 29 C -0.08 -1.25 5.88 -104.65 -0.62 -1.87 16 30 C -0.11 -1.41 9.60 36.00 0.35 -1.07 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.66 5.94 -51.93 -0.31 0.36 16 33 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.14 2.69 5.88 -52.49 -0.31 2.38 16 36 H 0.04 1.00 5.64 -51.93 -0.29 0.71 16 37 H 0.09 2.06 5.32 -51.96 -0.28 1.78 16 38 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 39 H 0.18 2.67 7.64 -52.49 -0.40 2.27 16 40 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.16 3.14 7.77 -52.49 -0.41 2.74 16 44 H 0.18 3.52 4.61 -55.87 -0.26 3.26 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 47 H 0.06 0.70 5.94 -51.93 -0.31 0.39 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -27.88 385.28 -10.45 -38.33 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.48 Total: 8.18 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -6.09 Total: -9.01 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.26 Total: -47.45 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.88 -10.45 -38.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065531526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.121 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds