Wall clock time and date at job start Tue Mar 31 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38307 * 119.92287 * 2 1 4 4 C 1.38081 * 120.06922 * 180.02562 * 3 2 1 5 5 C 1.38916 * 119.92926 * 359.97438 * 4 3 2 6 6 N 1.39827 * 120.07524 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99906 * 351.54210 * 6 5 4 8 8 C 1.50692 * 109.47205 * 262.87541 * 7 6 5 9 9 H 1.07998 * 120.00041 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00337 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99757 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00433 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47413 * 89.99989 * 12 10 8 14 14 H 1.48507 * 109.47429 * 209.99984 * 12 10 8 15 15 H 1.48506 * 109.47044 * 329.99986 * 12 10 8 16 16 C 1.34776 * 120.00217 * 171.54243 * 6 5 4 17 17 O 1.21520 * 119.99599 * 1.91004 * 16 6 5 18 18 C 1.48189 * 120.00239 * 181.91307 * 16 6 5 19 19 C 1.40594 * 119.75043 * 173.78017 * 18 16 6 20 20 N 1.31257 * 120.56758 * 180.02562 * 19 18 16 21 21 C 1.33787 * 119.81035 * 359.97438 * 20 19 18 22 22 C 1.40537 * 121.00125 * 179.97438 * 21 20 19 23 23 C 1.36083 * 119.75667 * 180.02562 * 22 21 20 24 24 C 1.39479 * 121.01316 * 359.97438 * 23 22 21 25 25 C 1.35992 * 120.98274 * 359.97438 * 24 23 22 26 26 C 1.40827 * 119.69735 * 359.97438 * 25 24 23 27 27 N 1.32181 * 119.74808 * 353.80170 * 18 16 6 28 28 C 1.38878 * 119.85296 * 0.27488 * 5 4 3 29 29 C 1.38125 * 119.92826 * 359.45122 * 28 5 4 30 30 C 1.50698 * 119.96819 * 180.27225 * 29 28 5 31 31 H 1.08997 * 109.47609 * 90.00543 * 1 2 3 32 32 H 1.09006 * 109.46789 * 210.00284 * 1 2 3 33 33 H 1.09000 * 109.47673 * 329.99857 * 1 2 3 34 34 H 1.07996 * 119.96739 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.03597 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.47177 * 22.87950 * 7 6 5 37 37 H 1.08999 * 109.47032 * 142.87416 * 7 6 5 38 38 H 0.97001 * 120.00082 * 179.97438 * 11 10 8 39 39 H 1.07997 * 119.71672 * 0.03948 * 19 18 16 40 40 H 1.08001 * 120.12290 * 359.97438 * 22 21 20 41 41 H 1.07994 * 119.49420 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.51272 * 179.71663 * 24 23 22 43 43 H 1.08001 * 120.15241 * 180.02562 * 25 24 23 44 44 H 1.08008 * 120.03865 * 179.72198 * 28 5 4 45 45 H 1.08994 * 109.47346 * 270.27386 * 30 29 28 46 46 H 1.09005 * 109.46671 * 30.27534 * 30 29 28 47 47 H 1.08999 * 109.46844 * 150.27536 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2022 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6722 0.0001 -0.0005 7 6 6.4046 1.2550 -0.1871 8 6 6.8084 1.3908 -1.6326 9 1 6.5453 0.6197 -2.3415 10 6 7.5128 2.5001 -2.0504 11 7 7.8318 3.4399 -1.1874 12 14 8.0126 2.6688 -3.8423 13 1 6.9417 3.3747 -4.5907 14 1 9.2748 3.4461 -3.9331 15 1 8.2189 1.3197 -4.4278 16 6 6.3461 -1.1544 0.1711 17 8 5.7390 -2.2002 0.2912 18 6 7.8274 -1.1484 0.2136 19 6 8.5212 -2.3314 0.5230 20 7 9.8330 -2.3442 0.5655 21 6 10.5177 -1.2231 0.3120 22 6 11.9224 -1.2083 0.3511 23 6 12.5932 -0.0535 0.0895 24 6 11.9080 1.1216 -0.2188 25 6 10.5492 1.1474 -0.2676 26 6 9.8192 -0.0277 -0.0039 27 7 8.4863 -0.0308 -0.0394 28 6 3.5780 -1.2017 -0.0058 29 6 2.1968 -1.1983 0.0005 30 6 1.4408 -2.5020 0.0010 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6552 2.1329 0.0004 35 1 4.1159 2.1386 -0.0010 36 1 5.7663 2.0933 0.0922 37 1 7.2959 1.2523 0.4404 38 1 8.3277 4.2201 -1.4813 39 1 7.9701 -3.2375 0.7273 40 1 12.4676 -2.1098 0.5887 41 1 13.6727 -0.0471 0.1203 42 1 12.4647 2.0254 -0.4178 43 1 10.0324 2.0647 -0.5081 44 1 4.1163 -2.1381 -0.0103 45 1 1.2581 -2.8165 -1.0264 46 1 2.0287 -3.2626 0.5148 47 1 0.4889 -2.3697 0.5152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065531526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:21 Heat of formation + Delta-G solvation = 82.657416 kcal Electronic energy + Delta-G solvation = -32187.027162 eV Core-core repulsion = 28107.702883 eV Total energy + Delta-G solvation = -4079.324279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.68231 -41.58367 -39.75725 -38.25524 -37.39635 -35.84461 -34.70121 -33.41351 -32.86314 -31.80148 -31.47585 -29.57949 -28.10273 -27.49869 -26.50622 -25.40254 -25.01384 -23.37639 -22.98210 -22.49165 -20.68277 -19.43234 -19.40093 -18.70113 -18.14291 -17.88663 -17.19108 -16.72212 -16.51980 -16.33730 -16.04685 -15.80345 -15.72161 -15.28644 -15.00478 -14.88239 -14.71767 -14.48830 -14.30809 -14.20560 -13.69735 -13.51476 -13.35744 -13.28103 -12.98385 -12.92184 -12.84667 -12.83067 -12.71169 -12.62774 -12.62187 -12.38366 -12.21470 -11.87082 -11.83864 -11.69036 -10.77211 -10.56731 -10.51788 -10.02628 -9.77068 -9.58109 -9.54945 -8.66125 -8.12951 -6.19578 -1.00128 -0.61500 0.36793 0.54622 0.90492 1.31418 1.34537 1.39100 1.44390 1.87060 2.09804 2.38384 2.81312 2.94291 3.03381 3.05551 3.17717 3.21436 3.53667 3.81197 3.97130 4.01721 4.05340 4.18962 4.25515 4.28687 4.34959 4.43050 4.46895 4.55139 4.76210 4.79350 4.85833 4.91132 4.93425 4.99643 5.02444 5.10528 5.16261 5.18006 5.28505 5.30448 5.39908 5.44685 5.45664 5.58123 5.72806 5.76843 5.82164 5.84192 6.10294 6.16690 6.31244 6.33524 6.60956 6.79994 7.00046 7.41360 8.92563 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.010845 B = 0.003736 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.241780 B = 7493.720476 C = 9421.241198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.122 4.122 3 C -0.099 4.099 4 C -0.166 4.166 5 C 0.130 3.870 6 N -0.521 5.521 7 C 0.239 3.761 8 C -0.503 4.503 9 H 0.026 0.974 10 C 0.048 3.952 11 N -0.900 5.900 12 Si 0.928 3.072 13 H -0.278 1.278 14 H -0.267 1.267 15 H -0.290 1.290 16 C 0.566 3.434 17 O -0.541 6.541 18 C 0.016 3.984 19 C 0.127 3.873 20 N -0.439 5.439 21 C 0.078 3.922 22 C -0.105 4.105 23 C -0.063 4.063 24 C -0.101 4.101 25 C -0.087 4.087 26 C 0.043 3.957 27 N -0.339 5.339 28 C -0.186 4.186 29 C -0.079 4.079 30 C -0.107 4.107 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.117 0.883 36 H 0.023 0.977 37 H 0.075 0.925 38 H 0.267 0.733 39 H 0.199 0.801 40 H 0.164 0.836 41 H 0.185 0.815 42 H 0.165 0.835 43 H 0.129 0.871 44 H 0.166 0.834 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -6.002 4.139 7.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.187 4.187 5 C 0.036 3.964 6 N -0.238 5.238 7 C 0.120 3.880 8 C -0.542 4.542 9 H 0.044 0.956 10 C -0.153 4.153 11 N -0.540 5.540 12 Si 0.754 3.246 13 H -0.204 1.204 14 H -0.191 1.191 15 H -0.216 1.216 16 C 0.356 3.644 17 O -0.422 6.422 18 C -0.139 4.139 19 C -0.047 4.047 20 N -0.153 5.153 21 C -0.047 4.047 22 C -0.124 4.124 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.106 4.106 26 C -0.084 4.084 27 N -0.057 5.057 28 C -0.206 4.206 29 C -0.079 4.079 30 C -0.164 4.164 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.135 0.865 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.216 0.784 40 H 0.182 0.818 41 H 0.202 0.798 42 H 0.183 0.817 43 H 0.146 0.854 44 H 0.182 0.818 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.814 -6.250 4.214 7.582 hybrid contribution 0.232 0.732 -1.272 1.486 sum 1.047 -5.518 2.941 6.340 Atomic orbital electron populations 1.20819 0.88558 1.03778 1.02931 1.20122 0.97833 0.91884 1.02419 1.21044 0.92182 0.98978 0.99487 1.21066 0.95543 0.96314 1.05732 1.18373 0.82105 0.95580 1.00387 1.45914 1.04919 1.10427 1.62579 1.19980 0.91860 0.78411 0.97791 1.21045 1.35203 1.04777 0.93197 0.95580 1.25114 0.95411 0.95219 0.99605 1.69975 1.39701 1.09598 1.34691 0.86051 0.78608 0.77443 0.82464 1.20404 1.19135 1.21550 1.18067 0.86197 0.83185 0.76978 1.90352 1.67303 1.31889 1.52616 1.22216 0.95014 0.92717 1.03936 1.23998 0.90504 0.98061 0.92182 1.68841 1.07247 1.26661 1.12515 1.20297 0.97153 0.89407 0.97853 1.21107 0.89277 1.01166 1.00835 1.21574 1.02724 0.90446 0.93545 1.21450 0.92589 1.00665 0.97383 1.21278 0.95351 0.96617 0.97401 1.20261 0.90295 0.96078 1.01744 1.69629 1.07646 1.25383 1.03046 1.22482 0.95093 0.98949 1.04028 1.20086 0.92547 0.96716 0.98591 1.20847 1.00170 0.92368 1.02974 0.90604 0.89897 0.90706 0.83740 0.86522 0.95886 0.90841 0.92365 0.78414 0.81817 0.79812 0.81719 0.85355 0.81795 0.90474 0.91774 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 9.60 71.24 0.68 -1.39 16 2 C -0.12 -3.61 5.88 -19.84 -0.12 -3.73 16 3 C -0.10 -3.26 9.69 22.25 0.22 -3.05 16 4 C -0.17 -6.85 9.30 22.40 0.21 -6.64 16 5 C 0.13 5.79 6.48 38.18 0.25 6.04 16 6 N -0.52 -24.87 2.70 -638.18 -1.72 -26.59 16 7 C 0.24 12.24 4.52 85.63 0.39 12.62 16 8 C -0.50 -27.41 7.88 25.60 0.20 -27.21 16 9 H 0.03 1.53 7.81 -2.91 -0.02 1.50 16 10 C 0.05 2.50 5.46 84.65 0.46 2.96 16 11 N -0.90 -47.51 13.00 21.45 0.28 -47.23 16 12 Si 0.93 42.75 29.54 68.60 2.03 44.78 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 16 C 0.57 25.83 7.54 86.89 0.65 26.48 16 17 O -0.54 -23.87 12.76 -3.78 -0.05 -23.92 16 18 C 0.02 0.67 6.62 42.31 0.28 0.95 16 19 C 0.13 4.63 10.75 85.35 0.92 5.55 16 20 N -0.44 -15.25 10.45 -187.21 -1.96 -17.20 16 21 C 0.08 2.66 6.60 40.34 0.27 2.93 16 22 C -0.10 -2.55 9.98 22.33 0.22 -2.32 16 23 C -0.06 -1.22 9.95 22.07 0.22 -1.00 16 24 C -0.10 -2.48 9.95 22.05 0.22 -2.26 16 25 C -0.09 -3.13 9.99 22.38 0.22 -2.91 16 26 C 0.04 1.71 6.60 40.48 0.27 1.98 16 27 N -0.34 -15.45 5.04 -177.30 -0.89 -16.34 16 28 C -0.19 -7.50 8.67 22.40 0.19 -7.31 16 29 C -0.08 -2.56 5.88 -19.88 -0.12 -2.67 16 30 C -0.11 -2.54 9.60 71.24 0.68 -1.85 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.36 5.94 -2.38 -0.01 1.34 16 33 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 34 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 35 H 0.12 5.13 5.88 -2.91 -0.02 5.11 16 36 H 0.02 1.25 5.64 -2.38 -0.01 1.23 16 37 H 0.07 3.94 5.32 -2.44 -0.01 3.93 16 38 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 39 H 0.20 6.13 7.64 -2.91 -0.02 6.11 16 40 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 43 H 0.13 5.39 7.77 -2.91 -0.02 5.37 16 44 H 0.17 6.96 4.61 -56.62 -0.26 6.70 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.52 8.09 -2.38 -0.02 1.51 16 47 H 0.09 1.67 5.94 -2.39 -0.01 1.65 16 Total: -1.00 -67.41 385.28 4.78 -62.63 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.78 Total: 26.70 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.32 Total: -2.83 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -4.30 Total: -107.36 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.05 Total: -23.92 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.41 4.78 -62.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065531526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.283 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds