Wall clock time and date at job start Tue Mar 31 2020 05:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39777 * 125.83558 * 2 1 4 4 C 1.36165 * 107.81266 * 180.16273 * 3 2 1 5 5 N 1.39213 * 126.22113 * 179.84967 * 4 3 2 6 6 S 1.65594 * 119.99863 * 352.31864 * 5 4 3 7 7 O 1.42100 * 106.40466 * 181.48306 * 6 5 4 8 8 O 1.42103 * 106.40436 * 48.56556 * 6 5 4 9 9 C 1.76198 * 107.21991 * 295.02133 * 6 5 4 10 10 C 1.38254 * 120.03149 * 95.42378 * 9 6 5 11 11 C 1.38107 * 119.93349 * 179.97438 * 10 9 6 12 12 C 1.38491 * 120.21458 * 0.02562 * 11 10 9 13 13 C 1.38210 * 119.85537 * 359.97438 * 12 11 10 14 14 C 1.38102 * 120.03404 * 275.39642 * 9 6 5 15 15 C 1.51368 * 109.76284 * 180.02562 * 13 12 11 16 16 C 1.54350 * 105.16702 * 342.81063 * 15 13 12 17 17 C 1.51681 * 130.30465 * 179.80111 * 12 11 10 18 18 N 1.35248 * 107.56226 * 359.58431 * 4 3 2 19 19 C 1.46499 * 126.04927 * 180.26672 * 18 4 3 20 20 C 1.50699 * 109.47220 * 89.99297 * 19 18 4 21 21 H 1.07995 * 120.00366 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99767 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99765 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47219 * 60.00430 * 24 22 20 26 26 H 1.48499 * 109.46474 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47078 * 300.00275 * 24 22 20 28 28 N 1.30834 * 125.84308 * 179.69613 * 2 1 3 29 29 H 1.08996 * 109.47175 * 270.27831 * 1 2 3 30 30 H 1.09000 * 109.47189 * 30.28451 * 1 2 3 31 31 H 1.09005 * 109.46651 * 150.27419 * 1 2 3 32 32 H 1.07997 * 126.09276 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99731 * 172.32829 * 5 4 3 34 34 H 1.08004 * 120.03381 * 0.02562 * 10 9 6 35 35 H 1.07998 * 119.88927 * 179.97438 * 11 10 9 36 36 H 1.08003 * 119.89178 * 0.05269 * 14 9 6 37 37 H 1.09000 * 110.30485 * 223.89324 * 15 13 12 38 38 H 1.08998 * 110.39185 * 101.77606 * 15 13 12 39 39 H 1.09006 * 110.81722 * 144.57050 * 16 15 13 40 40 H 1.08994 * 110.82578 * 267.92007 * 16 15 13 41 41 H 1.08997 * 110.25276 * 78.27468 * 17 12 11 42 42 H 1.08997 * 110.49893 * 316.01593 * 17 12 11 43 43 H 1.09004 * 109.46989 * 210.00055 * 19 18 4 44 44 H 1.09002 * 109.46938 * 329.99706 * 19 18 4 45 45 H 0.96995 * 119.99656 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1332 0.0000 4 6 3.6202 0.7119 -0.0037 5 7 4.7499 1.5254 -0.0079 6 16 4.5907 3.1623 -0.2004 7 8 5.9073 3.6969 -0.1953 8 8 3.5801 3.5769 0.7085 9 6 3.9484 3.4373 -1.8180 10 6 2.5881 3.5996 -2.0040 11 6 2.0869 3.8155 -3.2727 12 6 2.9427 3.8695 -4.3602 13 6 4.3026 3.7072 -4.1744 14 6 4.8034 3.4913 -2.9012 15 6 5.0167 3.8078 -5.5052 16 6 3.9163 3.6118 -6.5697 17 6 2.6466 4.0868 -5.8319 18 7 3.6093 -0.6405 0.0034 19 6 4.7869 -1.5121 0.0082 20 6 5.1906 -1.8033 1.4306 21 1 4.6263 -1.3818 2.2492 22 6 6.2799 -2.6089 1.6868 23 7 6.9667 -3.1227 0.6899 24 14 6.7799 -2.9705 3.4500 25 1 5.6603 -3.6467 4.1533 26 1 7.9735 -3.8539 3.4546 27 1 7.1036 -1.6980 4.1436 28 7 2.2731 -1.0606 0.0056 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5096 32 1 1.9903 2.1599 0.0004 33 1 5.6303 1.1332 0.1019 34 1 1.9181 3.5585 -1.1579 35 1 1.0242 3.9418 -3.4172 36 1 5.8659 3.3640 -2.7552 37 1 5.7694 3.0241 -5.5908 38 1 5.4787 4.7889 -5.6151 39 1 4.1100 4.2310 -7.4457 40 1 3.8313 2.5621 -6.8505 41 1 2.4681 5.1439 -6.0288 42 1 1.7857 3.4933 -6.1397 43 1 4.5494 -2.4463 -0.5008 44 1 5.6084 -1.0156 -0.5083 45 1 7.7332 -3.6891 0.8702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066247997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:17 Heat of formation + Delta-G solvation = 21.329796 kcal Electronic energy + Delta-G solvation = -30345.230669 eV Core-core repulsion = 26262.857881 eV Total energy + Delta-G solvation = -4082.372788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.65879 -40.32240 -37.29233 -36.07850 -35.84306 -35.07344 -33.84279 -32.09665 -31.80802 -29.55558 -29.17182 -28.03378 -27.67922 -26.07921 -23.32216 -22.89999 -21.85701 -21.16582 -20.88576 -19.89374 -18.86375 -17.72529 -17.12387 -16.88701 -16.64130 -16.16476 -15.92833 -15.48736 -15.13980 -14.79152 -14.55147 -14.29566 -14.14621 -13.58784 -13.24008 -13.20917 -12.98884 -12.86184 -12.64024 -12.61656 -12.38641 -12.23307 -12.15091 -11.96260 -11.90409 -11.85126 -11.55042 -11.53865 -11.39329 -11.28094 -11.20470 -10.98051 -10.85155 -10.72260 -10.31993 -9.85874 -9.81747 -9.27380 -8.91895 -8.70514 -8.06750 -7.67237 -6.32772 -4.41159 0.22117 0.67917 1.13491 2.56276 2.79899 3.21281 3.24260 3.25014 3.28975 3.33277 3.59072 3.73523 4.02901 4.14259 4.25676 4.39943 4.65225 4.69065 4.77615 4.92850 5.00395 5.02974 5.05979 5.23540 5.27318 5.31352 5.40853 5.44327 5.52349 5.71419 5.72502 5.79783 5.83680 5.91801 5.95814 5.97806 6.03944 6.07685 6.24472 6.27528 6.43758 6.65565 6.79843 6.91647 6.98871 7.36685 7.59963 7.79233 7.89636 8.51867 8.67326 9.26471 10.74713 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.003277 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.493493 B = 8543.387385 C = 8994.338079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.069 3.931 3 C -0.337 4.337 4 C 0.332 3.668 5 N -1.027 6.027 6 S 2.704 3.296 7 O -0.949 6.949 8 O -0.938 6.938 9 C -0.672 4.672 10 C -0.007 4.007 11 C -0.129 4.129 12 C -0.042 4.042 13 C -0.123 4.123 14 C -0.003 4.003 15 C -0.083 4.083 16 C -0.121 4.121 17 C -0.089 4.089 18 N -0.334 5.334 19 C 0.255 3.745 20 C -0.543 4.543 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.907 3.093 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 N -0.285 5.285 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.150 0.850 33 H 0.434 0.566 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 15.271 -13.503 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.096 4.096 3 C -0.371 4.371 4 C 0.105 3.895 5 N -0.779 5.779 6 S 2.794 3.206 7 O -0.939 6.939 8 O -0.928 6.928 9 C -0.760 4.760 10 C -0.026 4.026 11 C -0.147 4.147 12 C -0.042 4.042 13 C -0.124 4.124 14 C -0.022 4.022 15 C -0.120 4.120 16 C -0.159 4.159 17 C -0.126 4.126 18 N -0.118 5.118 19 C 0.137 3.863 20 C -0.582 4.582 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.734 3.266 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 N -0.110 5.110 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.168 0.832 33 H 0.272 0.728 34 H 0.165 0.835 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.536 14.486 -12.949 20.840 hybrid contribution 0.773 0.099 0.403 0.877 sum -6.763 14.585 -12.546 20.393 Atomic orbital electron populations 1.20059 0.87383 1.02440 1.02475 1.21815 0.96422 0.90348 1.01006 1.20835 0.89055 1.00479 1.26715 1.17454 0.86579 0.84329 1.01124 1.52943 1.13712 1.26091 1.85137 1.01779 0.73639 0.71056 0.74154 1.93616 1.37594 1.75415 1.87292 1.93605 1.59719 1.79366 1.60132 1.30686 1.03683 1.19219 1.22404 1.20949 0.92896 0.90719 0.98084 1.20731 0.99903 1.02603 0.91498 1.21013 0.94066 0.93603 0.95559 1.20639 0.95015 1.02004 0.94700 1.20318 0.99333 0.92157 0.90431 1.21070 0.98019 1.02832 0.90049 1.22313 0.93787 1.02187 0.97590 1.21248 0.99215 1.02226 0.89903 1.49391 1.06643 1.02297 1.53484 1.19691 0.77815 0.89668 0.99105 1.21310 1.13530 1.32072 0.91278 0.91552 1.24940 0.95618 0.94821 0.98302 1.69904 1.19128 1.32449 1.31261 0.86395 0.78074 0.78575 0.83578 1.19835 1.20896 1.19836 1.77384 0.86056 1.21744 1.25819 0.90978 0.91093 0.91362 0.83238 0.72770 0.83493 0.85077 0.84537 0.90217 0.89933 0.90280 0.90644 0.89568 0.89997 0.92402 0.93462 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.44 36.01 0.38 -0.49 16 2 C 0.07 1.29 7.21 -82.44 -0.59 0.70 16 3 C -0.34 -6.21 8.88 -39.75 -0.35 -6.56 16 4 C 0.33 6.68 7.58 -153.40 -1.16 5.52 16 5 N -1.03 -18.13 5.86 31.10 0.18 -17.95 16 6 S 2.70 42.66 5.35 -107.50 -0.58 42.09 16 7 O -0.95 -16.21 17.43 -57.17 -1.00 -17.21 16 8 O -0.94 -16.27 15.04 -57.17 -0.86 -17.13 16 9 C -0.67 -9.28 5.78 -39.63 -0.23 -9.51 16 10 C -0.01 -0.09 8.51 -39.62 -0.34 -0.43 16 11 C -0.13 -1.37 10.04 -39.54 -0.40 -1.77 16 12 C -0.04 -0.44 6.14 -104.06 -0.64 -1.08 16 13 C -0.12 -1.38 6.14 -104.21 -0.64 -2.02 16 14 C 0.00 -0.04 9.52 -39.53 -0.38 -0.42 16 15 C -0.08 -0.69 6.77 -26.85 -0.18 -0.87 16 16 C -0.12 -0.82 7.07 -25.32 -0.18 -1.00 16 17 C -0.09 -0.64 6.80 -26.69 -0.18 -0.83 16 18 N -0.33 -7.65 3.60 -61.63 -0.22 -7.87 16 19 C 0.25 6.37 5.98 -5.19 -0.03 6.34 16 20 C -0.54 -14.75 9.39 -34.44 -0.32 -15.07 16 21 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 24 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 N -0.28 -6.35 12.56 33.65 0.42 -5.93 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.15 2.39 4.18 -52.49 -0.22 2.17 16 33 H 0.43 7.47 8.19 -34.47 -0.28 7.19 16 34 H 0.15 1.69 5.73 -52.48 -0.30 1.39 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.14 1.59 7.74 -52.48 -0.41 1.19 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.05 1.15 7.60 -51.93 -0.39 0.76 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -33.52 384.74 -11.68 -45.20 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.80 Total: 6.61 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -5.35 Total: -25.77 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 1.12 Total: -55.58 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.86 Total: -34.34 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 42.66 SS G_CDS: -0.58 Total: 42.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.52 -11.68 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066247997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.534 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds