Wall clock time and date at job start Tue Mar 31 2020 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39777 * 125.83558 * 2 1 4 4 C 1.36165 * 107.81266 * 180.16273 * 3 2 1 5 5 N 1.39213 * 126.22113 * 179.84967 * 4 3 2 6 6 S 1.65594 * 119.99863 * 352.31864 * 5 4 3 7 7 O 1.42100 * 106.40466 * 181.48306 * 6 5 4 8 8 O 1.42103 * 106.40436 * 48.56556 * 6 5 4 9 9 C 1.76198 * 107.21991 * 295.02133 * 6 5 4 10 10 C 1.38254 * 120.03149 * 95.42378 * 9 6 5 11 11 C 1.38107 * 119.93349 * 179.97438 * 10 9 6 12 12 C 1.38491 * 120.21458 * 0.02562 * 11 10 9 13 13 C 1.38210 * 119.85537 * 359.97438 * 12 11 10 14 14 C 1.38102 * 120.03404 * 275.39642 * 9 6 5 15 15 C 1.51368 * 109.76284 * 180.02562 * 13 12 11 16 16 C 1.54350 * 105.16702 * 342.81063 * 15 13 12 17 17 C 1.51681 * 130.30465 * 179.80111 * 12 11 10 18 18 N 1.35248 * 107.56226 * 359.58431 * 4 3 2 19 19 C 1.46499 * 126.04927 * 180.26672 * 18 4 3 20 20 C 1.50699 * 109.47220 * 89.99297 * 19 18 4 21 21 H 1.07995 * 120.00366 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99767 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99765 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47219 * 60.00430 * 24 22 20 26 26 H 1.48499 * 109.46474 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47078 * 300.00275 * 24 22 20 28 28 N 1.30834 * 125.84308 * 179.69613 * 2 1 3 29 29 H 1.08996 * 109.47175 * 270.27831 * 1 2 3 30 30 H 1.09000 * 109.47189 * 30.28451 * 1 2 3 31 31 H 1.09005 * 109.46651 * 150.27419 * 1 2 3 32 32 H 1.07997 * 126.09276 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99731 * 172.32829 * 5 4 3 34 34 H 1.08004 * 120.03381 * 0.02562 * 10 9 6 35 35 H 1.07998 * 119.88927 * 179.97438 * 11 10 9 36 36 H 1.08003 * 119.89178 * 0.05269 * 14 9 6 37 37 H 1.09000 * 110.30485 * 223.89324 * 15 13 12 38 38 H 1.08998 * 110.39185 * 101.77606 * 15 13 12 39 39 H 1.09006 * 110.81722 * 144.57050 * 16 15 13 40 40 H 1.08994 * 110.82578 * 267.92007 * 16 15 13 41 41 H 1.08997 * 110.25276 * 78.27468 * 17 12 11 42 42 H 1.08997 * 110.49893 * 316.01593 * 17 12 11 43 43 H 1.09004 * 109.46989 * 210.00055 * 19 18 4 44 44 H 1.09002 * 109.46938 * 329.99706 * 19 18 4 45 45 H 0.96995 * 119.99656 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1332 0.0000 4 6 3.6202 0.7119 -0.0037 5 7 4.7499 1.5254 -0.0079 6 16 4.5907 3.1623 -0.2004 7 8 5.9073 3.6969 -0.1953 8 8 3.5801 3.5769 0.7085 9 6 3.9484 3.4373 -1.8180 10 6 2.5881 3.5996 -2.0040 11 6 2.0869 3.8155 -3.2727 12 6 2.9427 3.8695 -4.3602 13 6 4.3026 3.7072 -4.1744 14 6 4.8034 3.4913 -2.9012 15 6 5.0167 3.8078 -5.5052 16 6 3.9163 3.6118 -6.5697 17 6 2.6466 4.0868 -5.8319 18 7 3.6093 -0.6405 0.0034 19 6 4.7869 -1.5121 0.0082 20 6 5.1906 -1.8033 1.4306 21 1 4.6263 -1.3818 2.2492 22 6 6.2799 -2.6089 1.6868 23 7 6.9667 -3.1227 0.6899 24 14 6.7799 -2.9705 3.4500 25 1 5.6603 -3.6467 4.1533 26 1 7.9735 -3.8539 3.4546 27 1 7.1036 -1.6980 4.1436 28 7 2.2731 -1.0606 0.0056 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5096 32 1 1.9903 2.1599 0.0004 33 1 5.6303 1.1332 0.1019 34 1 1.9181 3.5585 -1.1579 35 1 1.0242 3.9418 -3.4172 36 1 5.8659 3.3640 -2.7552 37 1 5.7694 3.0241 -5.5908 38 1 5.4787 4.7889 -5.6151 39 1 4.1100 4.2310 -7.4457 40 1 3.8313 2.5621 -6.8505 41 1 2.4681 5.1439 -6.0288 42 1 1.7857 3.4933 -6.1397 43 1 4.5494 -2.4463 -0.5008 44 1 5.6084 -1.0156 -0.5083 45 1 7.7332 -3.6891 0.8702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066247997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:16 Heat of formation + Delta-G solvation = 0.657191 kcal Electronic energy + Delta-G solvation = -30346.127101 eV Core-core repulsion = 26262.857881 eV Total energy + Delta-G solvation = -4083.269219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21678 -41.12500 -38.62737 -37.26218 -36.76034 -36.54474 -35.74488 -33.84667 -32.64133 -30.74578 -30.34803 -29.54265 -28.38545 -27.81181 -24.79911 -24.12402 -22.78810 -22.37829 -21.79467 -21.36030 -20.17007 -19.00379 -18.76287 -18.45732 -18.19935 -17.15676 -16.73329 -16.67210 -16.37688 -16.22587 -16.11772 -15.77189 -15.06460 -14.79355 -14.46424 -14.35042 -14.09844 -13.95415 -13.83692 -13.77145 -13.65418 -13.48268 -13.47082 -13.45090 -13.22430 -13.09767 -12.99751 -12.71172 -12.61829 -12.53708 -12.29150 -12.10847 -12.09287 -11.89161 -11.79773 -11.73249 -11.36257 -10.78408 -10.13075 -9.78402 -9.71528 -9.22154 -8.39238 -6.56411 -1.01695 -0.28452 0.25325 1.01594 1.35492 1.36364 1.41213 1.45750 1.86663 1.94118 2.28979 2.33688 2.57116 2.91499 3.04857 3.37595 3.51818 3.61552 3.77010 3.86751 4.04660 4.14523 4.19566 4.23166 4.47032 4.49359 4.53806 4.61524 4.73755 4.79467 4.81562 4.83931 4.91316 4.92874 4.96476 5.03288 5.04602 5.12587 5.15540 5.21789 5.26240 5.33013 5.44057 5.46880 5.49556 5.74432 5.81320 5.92352 6.16793 6.55239 6.96740 7.15302 8.67383 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.003277 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.493493 B = 8543.387385 C = 8994.338079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.078 3.922 3 C -0.335 4.335 4 C 0.326 3.674 5 N -1.031 6.031 6 S 2.713 3.287 7 O -0.968 6.968 8 O -0.956 6.956 9 C -0.680 4.680 10 C -0.022 4.022 11 C -0.129 4.129 12 C -0.042 4.042 13 C -0.135 4.135 14 C -0.025 4.025 15 C -0.086 4.086 16 C -0.118 4.118 17 C -0.087 4.087 18 N -0.362 5.362 19 C 0.271 3.729 20 C -0.560 4.560 21 H 0.050 0.950 22 C 0.025 3.975 23 N -0.914 5.914 24 Si 0.968 3.032 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.268 1.268 28 N -0.330 5.330 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.175 0.825 33 H 0.432 0.568 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.031 0.969 44 H 0.045 0.955 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 16.793 -14.871 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C -0.368 4.368 4 C 0.100 3.900 5 N -0.781 5.781 6 S 2.807 3.193 7 O -0.958 6.958 8 O -0.946 6.946 9 C -0.772 4.772 10 C -0.041 4.041 11 C -0.147 4.147 12 C -0.043 4.043 13 C -0.136 4.136 14 C -0.045 4.045 15 C -0.123 4.123 16 C -0.155 4.155 17 C -0.123 4.123 18 N -0.146 5.146 19 C 0.152 3.848 20 C -0.599 4.599 21 H 0.069 0.931 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.791 3.209 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.193 1.193 28 N -0.155 5.155 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.192 0.808 33 H 0.269 0.731 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.329 16.014 -14.286 23.400 hybrid contribution 1.255 -0.272 0.697 1.461 sum -8.074 15.743 -13.589 22.309 Atomic orbital electron populations 1.20317 0.83423 1.04576 1.04028 1.22747 0.98715 0.89310 0.97984 1.21212 0.88245 1.01611 1.25759 1.17844 0.87932 0.83604 1.00637 1.53107 1.13169 1.26407 1.85375 1.01276 0.73054 0.70143 0.74804 1.93581 1.38806 1.75442 1.88000 1.93564 1.59891 1.79392 1.61803 1.30216 1.04670 1.21612 1.20687 1.21171 0.92263 0.91205 0.99449 1.21102 1.01640 1.01353 0.90645 1.21547 0.93578 0.91752 0.97414 1.21061 0.96254 1.01261 0.95029 1.20490 0.99456 0.93256 0.91296 1.21206 0.98558 1.03563 0.89009 1.22355 0.92755 1.02624 0.97758 1.21371 0.99874 1.03735 0.87328 1.49145 1.06470 1.03012 1.55999 1.19215 0.78829 0.89044 0.97753 1.21445 1.13918 1.32652 0.91839 0.93124 1.25714 0.95374 0.94354 1.02195 1.69981 1.19448 1.32705 1.33055 0.85460 0.77943 0.78634 0.78826 1.19856 1.19564 1.19293 1.77339 0.86048 1.23820 1.28316 0.89558 0.87617 0.90593 0.80821 0.73081 0.82797 0.81894 0.84626 0.90362 0.88618 0.87895 0.90920 0.87563 0.88530 0.95119 0.93699 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.44 71.24 0.74 -0.82 16 2 C 0.08 2.85 7.21 43.08 0.31 3.16 16 3 C -0.34 -12.16 8.88 22.16 0.20 -11.97 16 4 C 0.33 13.45 7.58 131.42 1.00 14.45 16 5 N -1.03 -38.01 5.86 -55.50 -0.33 -38.33 16 6 S 2.71 87.96 5.35 -56.49 -0.30 87.65 16 7 O -0.97 -34.37 17.43 -128.00 -2.23 -36.60 16 8 O -0.96 -33.39 15.04 -128.00 -1.93 -35.32 16 9 C -0.68 -18.77 5.78 22.24 0.13 -18.64 16 10 C -0.02 -0.51 8.51 22.24 0.19 -0.32 16 11 C -0.13 -2.41 10.04 22.30 0.22 -2.18 16 12 C -0.04 -0.77 6.14 -19.50 -0.12 -0.89 16 13 C -0.14 -2.87 6.14 -19.60 -0.12 -2.99 16 14 C -0.03 -0.66 9.52 22.30 0.21 -0.44 16 15 C -0.09 -1.27 6.77 30.52 0.21 -1.07 16 16 C -0.12 -1.21 7.07 31.51 0.22 -0.99 16 17 C -0.09 -0.92 6.80 30.62 0.21 -0.72 16 18 N -0.36 -17.24 3.60 -348.91 -1.26 -18.49 16 19 C 0.27 14.27 5.98 85.63 0.51 14.78 16 20 C -0.56 -31.56 9.39 25.60 0.24 -31.32 16 21 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 22 C 0.03 1.39 5.46 84.66 0.46 1.85 16 23 N -0.91 -51.52 13.29 21.45 0.28 -51.24 16 24 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 N -0.33 -15.02 12.56 -47.44 -0.60 -15.62 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.17 5.32 4.18 -2.91 -0.01 5.31 16 33 H 0.43 15.93 8.19 -96.75 -0.79 15.13 16 34 H 0.15 3.27 5.73 -2.91 -0.02 3.25 16 35 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.14 3.34 7.74 -2.91 -0.02 3.32 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 2.33 7.60 -2.39 -0.02 2.31 16 45 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -74.36 384.74 0.54 -73.83 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.25 Total: 26.69 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 4.61 Total: -38.11 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -1.89 Total: -123.68 kcal Atomic # 8 Polarization: -67.77 SS G_CDS: -4.16 Total: -71.92 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 87.96 SS G_CDS: -0.30 Total: 87.65 kcal Total: -74.36 0.54 -73.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066247997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.486 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds