Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46603 * 180.02562 * 9 8 6 11 11 O 1.42905 * 109.46727 * 179.97438 * 10 9 8 12 12 C 1.35903 * 116.99687 * 179.97438 * 11 10 9 13 13 C 1.38763 * 120.04465 * 359.72530 * 12 11 10 14 14 C 1.38133 * 119.99801 * 179.74505 * 13 12 11 15 15 C 1.38251 * 120.07252 * 0.53492 * 14 13 12 16 16 C 1.38472 * 120.08982 * 359.74049 * 15 14 13 17 17 F 1.35100 * 119.99791 * 180.02562 * 16 15 14 18 18 C 1.38384 * 120.00246 * 359.97438 * 16 15 14 19 19 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 20 20 C 1.46491 * 126.04623 * 179.87688 * 19 4 3 21 21 C 1.50702 * 109.46957 * 269.71277 * 20 19 4 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 31 31 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 32 32 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 33 33 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 34 34 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 35 35 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 36 36 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 37 37 H 1.09005 * 109.47406 * 299.99990 * 9 8 6 38 38 H 1.08990 * 109.47361 * 60.00544 * 9 8 6 39 39 H 1.08995 * 109.46988 * 299.99815 * 10 9 8 40 40 H 1.09002 * 109.46909 * 60.00371 * 10 9 8 41 41 H 1.08007 * 120.00417 * 0.02562 * 13 12 11 42 42 H 1.07994 * 119.96625 * 180.27452 * 14 13 12 43 43 H 1.08003 * 119.95302 * 179.77254 * 15 14 13 44 44 H 1.08004 * 120.04007 * 180.02562 * 18 16 15 45 45 H 1.09004 * 109.47166 * 149.71543 * 20 19 4 46 46 H 1.08994 * 109.47507 * 29.71250 * 20 19 4 47 47 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 6 6.6502 6.1122 0.0388 11 8 6.2491 7.4837 0.0421 12 6 7.2381 8.4158 0.0498 13 6 8.5675 8.0181 0.0598 14 6 9.5720 8.9662 0.0624 15 6 9.2546 10.3118 0.0661 16 6 7.9291 10.7124 0.0618 17 9 7.6210 12.0278 0.0649 18 6 6.9200 9.7654 0.0533 19 7 3.6093 -0.6405 0.0013 20 6 4.7870 -1.5116 0.0026 21 6 5.1921 -1.8109 -1.4178 22 1 4.6288 -1.3935 -2.2393 23 6 6.2856 -2.6124 -1.6685 24 7 6.9718 -3.1203 -0.6681 25 14 6.7923 -2.9770 -3.4290 26 1 5.8641 -2.2912 -4.3635 27 1 8.1755 -2.4872 -3.6576 28 1 6.7406 -4.4422 -3.6658 29 7 2.2731 -1.0608 0.0005 30 1 -0.3634 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 1.9901 2.1596 -0.0009 34 1 5.6359 1.1294 0.0155 35 1 6.4297 3.5415 0.9182 36 1 6.4372 3.5481 -0.8617 37 1 4.8172 5.4259 -0.8609 38 1 4.8102 5.4187 0.9191 39 1 7.2421 5.9042 0.9301 40 1 7.2486 5.9112 -0.8499 41 1 8.8168 6.9672 0.0611 42 1 10.6065 8.6561 0.0657 43 1 10.0415 11.0515 0.0717 44 1 5.8860 10.0772 0.0496 45 1 4.5494 -2.4431 0.5166 46 1 5.6079 -1.0120 0.5169 47 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068218580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = -27.081856 kcal Electronic energy + Delta-G solvation = -30172.430698 eV Core-core repulsion = 25657.578542 eV Total energy + Delta-G solvation = -4514.852156 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.31629 -40.91573 -40.52058 -39.31031 -37.76737 -34.81901 -34.17046 -33.79337 -32.10406 -31.31449 -30.24445 -29.29245 -28.64917 -27.17432 -26.06701 -23.80023 -23.24636 -22.84161 -21.94999 -20.97587 -19.74849 -19.37805 -18.86456 -17.19203 -16.97625 -16.85198 -16.75200 -16.57981 -16.33918 -16.27921 -16.01048 -15.53421 -15.06450 -14.74758 -14.47149 -14.26759 -14.18289 -13.88688 -13.65864 -13.13791 -12.88629 -12.81844 -12.62159 -12.61433 -12.52569 -12.43781 -12.06885 -11.89057 -11.79430 -11.64214 -11.60717 -11.29829 -11.10111 -10.96151 -10.95418 -10.42125 -10.38172 -9.95864 -9.83277 -9.53991 -9.33919 -8.77437 -8.74534 -7.95028 -7.47313 -6.38342 -4.46713 0.67511 0.84196 2.20785 2.46530 2.88981 3.07674 3.10805 3.13982 3.20307 3.26315 3.57260 3.75348 3.92418 4.19992 4.24887 4.42094 4.50843 4.52991 4.55924 4.66830 4.76030 4.92839 4.95081 4.98446 4.99315 5.06447 5.27245 5.34202 5.49460 5.62760 5.63154 5.73305 5.75340 5.86515 5.93136 6.01141 6.14147 6.16574 6.23969 6.27061 6.39762 6.63755 6.79341 6.91851 7.00345 7.48249 7.54478 7.58969 7.75061 7.87100 8.25581 8.58437 8.67498 9.21052 10.68754 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.001758 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.918181 B =15923.641511 C =18119.226126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.300 3.700 5 N -0.640 5.640 6 C 0.520 3.480 7 O -0.514 6.514 8 C -0.133 4.133 9 C -0.104 4.104 10 C 0.058 3.942 11 O -0.307 6.307 12 C 0.164 3.836 13 C -0.220 4.220 14 C -0.050 4.050 15 C -0.196 4.196 16 C 0.138 3.862 17 F -0.135 7.135 18 C -0.193 4.193 19 N -0.345 5.345 20 C 0.256 3.744 21 C -0.539 4.539 22 H 0.065 0.935 23 C 0.066 3.934 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.279 1.279 29 N -0.285 5.285 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.417 0.583 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 22.674 3.102 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.077 3.923 5 N -0.287 5.287 6 C 0.306 3.694 7 O -0.388 6.388 8 C -0.173 4.173 9 C -0.142 4.142 10 C -0.017 4.017 11 O -0.220 6.220 12 C 0.118 3.882 13 C -0.239 4.239 14 C -0.068 4.068 15 C -0.215 4.215 16 C 0.119 3.881 17 F -0.113 7.113 18 C -0.212 4.212 19 N -0.130 5.130 20 C 0.138 3.862 21 C -0.578 4.578 22 H 0.084 0.916 23 C -0.138 4.138 24 N -0.527 5.527 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 N -0.111 5.111 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.253 0.747 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.491 21.646 3.150 22.331 hybrid contribution 1.257 0.279 -0.948 1.599 sum 5.748 21.925 2.202 22.772 Atomic orbital electron populations 1.20019 0.87583 1.02456 1.02041 1.22042 0.96531 0.91060 1.01838 1.21272 0.89077 1.00436 1.21887 1.17951 0.88079 0.83364 1.02884 1.42813 1.08284 1.05671 1.71947 1.20460 0.91410 0.81325 0.76203 1.90658 1.26905 1.73699 1.47537 1.21477 0.96421 0.93885 1.05554 1.21235 0.96387 0.90749 1.05816 1.22937 0.98433 0.78346 1.01974 1.86088 1.32373 1.15772 1.87765 1.18621 0.87309 0.88683 0.93586 1.21396 0.91782 1.01212 1.09540 1.20814 0.99562 0.91517 0.94879 1.21063 0.94728 0.97457 1.08230 1.17294 0.93072 0.77514 1.00250 1.91522 1.93944 1.32235 1.93638 1.20285 1.00491 0.90032 1.10393 1.49348 1.06534 1.02194 1.54922 1.19621 0.77831 0.89783 0.98934 1.21383 1.13036 1.31999 0.91370 0.91645 1.24947 0.95727 0.94892 0.98203 1.69927 1.19075 1.32767 1.30980 0.86301 0.78322 0.78496 0.83601 1.19553 1.20639 1.20509 1.77359 0.86142 1.21818 1.25753 0.91372 0.91132 0.91503 0.82144 0.74676 0.88003 0.87851 0.89563 0.89597 0.91383 0.91347 0.84529 0.84575 0.84617 0.83821 0.92554 0.93826 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.00 7.21 -82.44 -0.59 0.41 16 3 C -0.29 -5.95 9.58 -39.78 -0.38 -6.33 16 4 C 0.30 6.16 7.66 -153.16 -1.17 4.98 16 5 N -0.64 -10.42 5.41 -11.46 -0.06 -10.48 16 6 C 0.52 7.30 7.79 -10.98 -0.09 7.21 16 7 O -0.51 -8.74 13.11 5.55 0.07 -8.67 16 8 C -0.13 -1.14 5.70 -27.88 -0.16 -1.30 16 9 C -0.10 -0.91 4.87 -26.73 -0.13 -1.04 16 10 C 0.06 0.41 4.74 37.16 0.18 0.59 16 11 O -0.31 -2.92 10.14 -19.43 -0.20 -3.11 16 12 C 0.16 1.46 6.68 -39.23 -0.26 1.20 16 13 C -0.22 -1.57 9.04 -39.43 -0.36 -1.92 16 14 C -0.05 -0.31 10.04 -39.61 -0.40 -0.71 16 15 C -0.20 -1.38 10.02 -39.49 -0.40 -1.78 16 16 C 0.14 1.19 7.30 -39.44 -0.29 0.91 16 17 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 18 C -0.19 -1.73 9.97 -39.37 -0.39 -2.12 16 19 N -0.34 -7.94 3.60 -61.58 -0.22 -8.17 16 20 C 0.26 6.26 6.01 -5.20 -0.03 6.23 16 21 C -0.54 -14.21 9.39 -34.44 -0.32 -14.53 16 22 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 23 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -23.81 13.29 55.43 0.74 -23.07 16 25 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 N -0.29 -6.60 12.56 33.65 0.42 -6.18 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.16 3.15 5.83 -52.49 -0.31 2.84 16 34 H 0.42 6.12 7.96 -40.82 -0.32 5.79 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.07 0.38 7.65 -51.93 -0.40 -0.02 16 40 H 0.07 0.40 7.67 -51.93 -0.40 0.00 16 41 H 0.14 0.71 6.30 -52.48 -0.33 0.38 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 44 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 45 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.04 1.02 7.49 -51.93 -0.39 0.63 16 47 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 406.38 15.07 6.12 6.12 Total: -1.00 -32.48 406.38 -8.96 -41.43 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.34 Total: 5.23 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -4.52 Total: -7.13 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.88 Total: -47.89 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.12 Total: -11.79 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.48 -8.96 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068218580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.352 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds