Wall clock time and date at job start Tue Mar 31 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46603 * 180.02562 * 9 8 6 11 11 O 1.42905 * 109.46727 * 179.97438 * 10 9 8 12 12 C 1.35903 * 116.99687 * 179.97438 * 11 10 9 13 13 C 1.38763 * 120.04465 * 359.72530 * 12 11 10 14 14 C 1.38133 * 119.99801 * 179.74505 * 13 12 11 15 15 C 1.38251 * 120.07252 * 0.53492 * 14 13 12 16 16 C 1.38472 * 120.08982 * 359.74049 * 15 14 13 17 17 F 1.35100 * 119.99791 * 180.02562 * 16 15 14 18 18 C 1.38384 * 120.00246 * 359.97438 * 16 15 14 19 19 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 20 20 C 1.46491 * 126.04623 * 179.87688 * 19 4 3 21 21 C 1.50702 * 109.46957 * 269.71277 * 20 19 4 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 31 31 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 32 32 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 33 33 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 34 34 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 35 35 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 36 36 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 37 37 H 1.09005 * 109.47406 * 299.99990 * 9 8 6 38 38 H 1.08990 * 109.47361 * 60.00544 * 9 8 6 39 39 H 1.08995 * 109.46988 * 299.99815 * 10 9 8 40 40 H 1.09002 * 109.46909 * 60.00371 * 10 9 8 41 41 H 1.08007 * 120.00417 * 0.02562 * 13 12 11 42 42 H 1.07994 * 119.96625 * 180.27452 * 14 13 12 43 43 H 1.08003 * 119.95302 * 179.77254 * 15 14 13 44 44 H 1.08004 * 120.04007 * 180.02562 * 18 16 15 45 45 H 1.09004 * 109.47166 * 149.71543 * 20 19 4 46 46 H 1.08994 * 109.47507 * 29.71250 * 20 19 4 47 47 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 6 6.6502 6.1122 0.0388 11 8 6.2491 7.4837 0.0421 12 6 7.2381 8.4158 0.0498 13 6 8.5675 8.0181 0.0598 14 6 9.5720 8.9662 0.0624 15 6 9.2546 10.3118 0.0661 16 6 7.9291 10.7124 0.0618 17 9 7.6210 12.0278 0.0649 18 6 6.9200 9.7654 0.0533 19 7 3.6093 -0.6405 0.0013 20 6 4.7870 -1.5116 0.0026 21 6 5.1921 -1.8109 -1.4178 22 1 4.6288 -1.3935 -2.2393 23 6 6.2856 -2.6124 -1.6685 24 7 6.9718 -3.1203 -0.6681 25 14 6.7923 -2.9770 -3.4290 26 1 5.8641 -2.2912 -4.3635 27 1 8.1755 -2.4872 -3.6576 28 1 6.7406 -4.4422 -3.6658 29 7 2.2731 -1.0608 0.0005 30 1 -0.3634 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 1.9901 2.1596 -0.0009 34 1 5.6359 1.1294 0.0155 35 1 6.4297 3.5415 0.9182 36 1 6.4372 3.5481 -0.8617 37 1 4.8172 5.4259 -0.8609 38 1 4.8102 5.4187 0.9191 39 1 7.2421 5.9042 0.9301 40 1 7.2486 5.9112 -0.8499 41 1 8.8168 6.9672 0.0611 42 1 10.6065 8.6561 0.0657 43 1 10.0415 11.0515 0.0717 44 1 5.8860 10.0772 0.0496 45 1 4.5494 -2.4431 0.5166 46 1 5.6079 -1.0120 0.5169 47 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068218580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:02 Heat of formation + Delta-G solvation = -45.354587 kcal Electronic energy + Delta-G solvation = -30173.223063 eV Core-core repulsion = 25657.578542 eV Total energy + Delta-G solvation = -4515.644521 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.97603 -42.40923 -41.13380 -40.57410 -38.35166 -36.26824 -35.59831 -34.91771 -33.82705 -31.89235 -30.95295 -30.70022 -30.02054 -28.11549 -27.79545 -24.87504 -24.37073 -23.81430 -22.80335 -21.95055 -21.20721 -20.67926 -19.54735 -18.88307 -18.35876 -17.89968 -17.50264 -17.44479 -17.11520 -16.97840 -16.79723 -16.63272 -16.49771 -16.05782 -15.76370 -15.51768 -14.99745 -14.70560 -14.64087 -14.50673 -14.41764 -14.04514 -13.73436 -13.60403 -13.38352 -13.31392 -13.19714 -13.08214 -12.98421 -12.88161 -12.71178 -12.48249 -12.31874 -12.26695 -11.90025 -11.86699 -11.67348 -11.54158 -11.44359 -10.90184 -10.76212 -9.91536 -9.62852 -9.31235 -9.05344 -8.36615 -6.53779 0.10922 0.28696 0.82023 1.34353 1.35260 1.39728 1.51063 1.66136 1.97751 2.07528 2.28066 2.38890 2.59070 2.93806 3.33390 3.48494 3.76190 3.83895 3.94921 3.95900 4.00003 4.09510 4.13812 4.25870 4.38880 4.42297 4.43850 4.49179 4.63238 4.63572 4.73527 4.84614 4.88751 4.92941 4.96482 5.00548 5.05877 5.09345 5.20101 5.21770 5.23970 5.27931 5.35068 5.51448 5.72900 5.77137 5.96290 6.18531 6.31621 6.36083 6.57972 6.98977 7.06556 7.18486 8.69935 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.001758 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.918181 B =15923.641511 C =18119.226126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.056 3.944 3 C -0.310 4.310 4 C 0.299 3.701 5 N -0.640 5.640 6 C 0.517 3.483 7 O -0.545 6.545 8 C -0.120 4.120 9 C -0.099 4.099 10 C 0.058 3.942 11 O -0.330 6.330 12 C 0.148 3.852 13 C -0.218 4.218 14 C -0.046 4.046 15 C -0.196 4.196 16 C 0.119 3.881 17 F -0.145 7.145 18 C -0.212 4.212 19 N -0.367 5.367 20 C 0.272 3.728 21 C -0.554 4.554 22 H 0.046 0.954 23 C 0.028 3.972 24 N -0.913 5.913 25 Si 0.969 3.031 26 H -0.278 1.278 27 H -0.262 1.262 28 H -0.278 1.278 29 N -0.333 5.333 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.167 0.833 34 H 0.424 0.576 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.160 0.840 42 H 0.168 0.832 43 H 0.154 0.846 44 H 0.137 0.863 45 H 0.025 0.975 46 H 0.052 0.948 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.320 23.327 2.564 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C -0.342 4.342 4 C 0.076 3.924 5 N -0.288 5.288 6 C 0.306 3.694 7 O -0.421 6.421 8 C -0.159 4.159 9 C -0.137 4.137 10 C -0.016 4.016 11 O -0.244 6.244 12 C 0.102 3.898 13 C -0.237 4.237 14 C -0.064 4.064 15 C -0.215 4.215 16 C 0.100 3.900 17 F -0.124 7.124 18 C -0.231 4.231 19 N -0.153 5.153 20 C 0.153 3.847 21 C -0.593 4.593 22 H 0.064 0.936 23 C -0.174 4.174 24 N -0.551 5.551 25 Si 0.793 3.207 26 H -0.203 1.203 27 H -0.187 1.187 28 H -0.203 1.203 29 N -0.159 5.159 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.184 0.816 34 H 0.262 0.738 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.178 0.822 42 H 0.186 0.814 43 H 0.172 0.828 44 H 0.155 0.845 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.678 22.323 2.624 23.448 hybrid contribution 0.527 0.145 -0.740 0.920 sum 7.206 22.469 1.883 23.671 Atomic orbital electron populations 1.20215 0.84062 1.03814 1.03823 1.22887 0.98713 0.90183 0.99101 1.21473 0.89217 1.00702 1.22763 1.18378 0.89819 0.82844 1.01317 1.43080 1.07428 1.06138 1.72160 1.21582 0.92835 0.80637 0.74335 1.90635 1.28846 1.73928 1.48696 1.21543 0.93965 0.92009 1.08399 1.21137 0.97055 0.91368 1.04183 1.23017 0.97620 0.77035 1.03970 1.86044 1.33384 1.16798 1.88131 1.18770 0.88097 0.88367 0.94540 1.21711 0.90939 1.02680 1.08346 1.21218 1.00969 0.90817 0.93362 1.21370 0.94284 0.98590 1.07216 1.17528 0.93934 0.77096 1.01489 1.91490 1.94117 1.32878 1.93876 1.20383 1.00506 0.90780 1.11456 1.49169 1.06257 1.02967 1.56876 1.19241 0.78657 0.89012 0.97806 1.21419 1.13424 1.32804 0.91609 0.93591 1.25667 0.95429 0.94309 1.01973 1.69994 1.19405 1.32917 1.32740 0.85347 0.78504 0.78105 0.78732 1.20264 1.18679 1.20333 1.77302 0.86563 1.23633 1.28355 0.89255 0.88927 0.90938 0.81599 0.73830 0.84682 0.85129 0.91468 0.91164 0.89165 0.89419 0.82214 0.81405 0.82834 0.84525 0.95659 0.93012 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 10.44 71.23 0.74 -0.97 16 2 C 0.06 2.26 7.21 43.07 0.31 2.57 16 3 C -0.31 -12.58 9.58 22.14 0.21 -12.37 16 4 C 0.30 12.43 7.66 131.32 1.01 13.44 16 5 N -0.64 -20.47 5.41 -308.55 -1.67 -22.14 16 6 C 0.52 13.95 7.79 87.66 0.68 14.64 16 7 O -0.55 -18.46 13.11 -3.07 -0.04 -18.50 16 8 C -0.12 -1.72 5.70 29.85 0.17 -1.55 16 9 C -0.10 -1.58 4.87 30.60 0.15 -1.43 16 10 C 0.06 0.67 4.74 71.98 0.34 1.01 16 11 O -0.33 -5.96 10.14 -92.45 -0.94 -6.90 16 12 C 0.15 2.48 6.68 22.50 0.15 2.63 16 13 C -0.22 -2.48 9.04 22.37 0.20 -2.28 16 14 C -0.05 -0.43 10.04 22.25 0.22 -0.21 16 15 C -0.20 -2.40 10.02 22.33 0.22 -2.17 16 16 C 0.12 2.03 7.30 22.36 0.16 2.19 16 17 F -0.14 -2.77 17.27 44.97 0.78 -1.99 16 18 C -0.21 -3.87 9.97 22.41 0.22 -3.65 16 19 N -0.37 -17.39 3.60 -348.73 -1.26 -18.64 16 20 C 0.27 13.67 6.01 85.64 0.51 14.19 16 21 C -0.55 -29.68 9.39 25.60 0.24 -29.44 16 22 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 23 C 0.03 1.45 5.46 84.66 0.46 1.91 16 24 N -0.91 -48.59 13.29 21.45 0.28 -48.31 16 25 Si 0.97 41.03 29.54 68.60 2.03 43.06 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 28 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 29 N -0.33 -15.81 12.56 -47.45 -0.60 -16.41 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.17 6.52 5.83 -2.91 -0.02 6.51 16 34 H 0.42 12.06 7.96 -92.70 -0.74 11.32 16 35 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.32 8.10 -2.38 -0.02 1.30 16 38 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 39 H 0.09 0.66 7.65 -2.39 -0.02 0.64 16 40 H 0.09 0.69 7.67 -2.39 -0.02 0.67 16 41 H 0.16 0.99 6.30 -2.91 -0.02 0.97 16 42 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 43 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 44 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 45 H 0.03 1.40 8.14 -2.38 -0.02 1.39 16 46 H 0.05 2.47 7.49 -2.39 -0.02 2.45 16 47 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 Total: -1.00 -73.21 406.38 4.88 -68.33 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.27 Total: 22.98 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 6.02 Total: -1.48 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.24 Total: -105.50 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.98 Total: -25.40 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -73.21 4.88 -68.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068218580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.975 kcal (2) G-P(sol) polarization free energy of solvation -73.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds