Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30473 * 125.96938 * 2 1 4 4 N 1.39931 * 108.93480 * 180.16273 * 3 2 1 5 5 C 1.40141 * 125.76764 * 179.81143 * 4 3 2 6 6 C 1.38845 * 120.06856 * 354.17986 * 5 4 3 7 7 C 1.38121 * 119.93122 * 179.97438 * 6 5 4 8 8 C 1.38275 * 120.06853 * 0.02562 * 7 6 5 9 9 C 1.38285 * 120.13783 * 359.97438 * 8 7 6 10 10 C 1.38117 * 120.06410 * 0.02562 * 9 8 7 11 11 C 1.34571 * 108.46107 * 359.54256 * 4 3 2 12 12 C 1.38125 * 107.36588 * 0.26782 * 11 4 3 13 13 C 1.47341 * 126.41407 * 179.97438 * 12 11 4 14 14 O 1.21627 * 119.99700 * 172.64903 * 13 12 11 15 15 N 1.34772 * 119.99931 * 352.65262 * 13 12 11 16 16 C 1.36983 * 120.00314 * 0.60079 * 15 13 12 17 17 H 1.08002 * 119.99479 * 307.23582 * 16 15 13 18 18 C 1.38974 * 120.00217 * 127.23602 * 16 15 13 19 19 N 1.31408 * 119.99911 * 182.55448 * 18 16 15 20 20 Si 1.86802 * 119.99938 * 2.56116 * 18 16 15 21 21 H 1.48495 * 109.47094 * 94.17492 * 20 18 16 22 22 H 1.48499 * 109.47012 * 214.17515 * 20 18 16 23 23 H 1.48497 * 109.47294 * 334.17198 * 20 18 16 24 24 C 1.46497 * 119.99976 * 180.60108 * 15 13 12 25 25 C 1.50699 * 109.47380 * 89.99956 * 24 15 13 26 26 C 1.38231 * 119.99720 * 269.72661 * 25 24 15 27 27 C 1.38237 * 120.00080 * 179.76590 * 26 25 24 28 28 C 1.38240 * 119.99595 * 0.50510 * 27 26 25 29 29 C 1.38235 * 120.00216 * 359.74932 * 28 27 26 30 30 C 1.38233 * 119.99715 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.47004 * 270.33821 * 1 2 3 32 32 H 1.09002 * 109.46887 * 30.33104 * 1 2 3 33 33 H 1.08996 * 109.47163 * 150.33087 * 1 2 3 34 34 H 1.07996 * 120.03535 * 0.02562 * 6 5 4 35 35 H 1.08007 * 119.96146 * 179.72452 * 7 6 5 36 36 H 1.08002 * 119.93413 * 180.02562 * 8 7 6 37 37 H 1.07992 * 119.96591 * 180.02562 * 9 8 7 38 38 H 1.08002 * 120.03312 * 180.02562 * 10 9 8 39 39 H 1.08003 * 126.31356 * 180.26539 * 11 4 3 40 40 H 0.97001 * 119.99730 * 185.00546 * 19 18 16 41 41 H 1.09004 * 109.47385 * 210.00120 * 24 15 13 42 42 H 1.09010 * 109.47129 * 329.99612 * 24 15 13 43 43 H 1.08005 * 120.00235 * 0.02562 * 26 25 24 44 44 H 1.08002 * 120.00579 * 180.23667 * 27 26 25 45 45 H 1.08003 * 119.99345 * 179.72541 * 28 27 26 46 46 H 1.07993 * 120.00036 * 179.97438 * 29 28 27 47 47 H 1.07998 * 120.00184 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0560 0.0000 4 7 3.6112 0.6460 -0.0038 5 6 4.7275 1.4933 -0.0087 6 6 4.5585 2.8659 -0.1320 7 6 5.6607 3.6983 -0.1359 8 6 6.9314 3.1660 -0.0178 9 6 7.1030 1.7994 0.1052 10 6 6.0048 0.9618 0.1098 11 6 3.6448 -0.6992 0.0041 12 6 2.3372 -1.1442 0.0067 13 6 1.8911 -2.5485 0.0143 14 8 0.7114 -2.8110 0.1507 15 7 2.7904 -3.5419 -0.1296 16 6 4.1206 -3.2466 -0.2708 17 1 4.4410 -2.5479 -1.0294 18 6 5.0577 -3.8461 0.5623 19 7 6.3279 -3.5252 0.4604 20 14 4.5116 -5.1081 1.8266 21 1 4.6457 -6.4719 1.2545 22 1 5.3616 -4.9940 3.0389 23 1 3.0934 -4.8616 2.1915 24 6 2.3454 -4.9376 -0.1352 25 6 2.0304 -5.3589 -1.5474 26 6 0.7522 -5.1968 -2.0482 27 6 0.4644 -5.5787 -3.3452 28 6 1.4523 -6.1323 -4.1380 29 6 2.7292 -6.2993 -3.6355 30 6 3.0181 -5.9131 -2.3401 31 1 -0.3633 0.0061 1.0276 32 1 -0.3633 0.8870 -0.5190 33 1 -0.3633 -0.8929 -0.5087 34 1 3.5663 3.2823 -0.2239 35 1 5.5301 4.7658 -0.2363 36 1 7.7917 3.8190 -0.0207 37 1 8.0966 1.3867 0.1977 38 1 6.1393 -0.1055 0.2063 39 1 4.5307 -1.3169 0.0077 40 1 6.9908 -3.9950 0.9902 41 1 3.1355 -5.5726 0.2656 42 1 1.4519 -5.0366 0.4814 43 1 -0.0206 -4.7679 -1.4274 44 1 -0.5333 -5.4486 -3.7377 45 1 1.2262 -6.4348 -5.1499 46 1 3.5008 -6.7322 -4.2548 47 1 4.0156 -6.0438 -1.9473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069348021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = 115.622051 kcal Electronic energy + Delta-G solvation = -32021.120574 eV Core-core repulsion = 27943.225749 eV Total energy + Delta-G solvation = -4077.894825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.14222 -39.28556 -38.72880 -37.85884 -35.15278 -33.58567 -32.47225 -31.36562 -30.92938 -30.40751 -30.19554 -29.30976 -27.13877 -25.91606 -25.13919 -23.14111 -22.38682 -22.04399 -21.25888 -20.69373 -19.60238 -18.86945 -18.26372 -16.83495 -16.42584 -15.94467 -15.78524 -15.17038 -15.05580 -14.84649 -14.63257 -14.43161 -14.33144 -13.95594 -13.78220 -13.44011 -13.27182 -13.03106 -12.95240 -12.79508 -12.46735 -12.37075 -12.30710 -12.09560 -11.98084 -11.72418 -11.51266 -11.45736 -11.31383 -10.99039 -10.84805 -10.50784 -10.39045 -10.20864 -9.92331 -9.71025 -9.17588 -8.91224 -8.88913 -8.45892 -8.44058 -8.23791 -7.83661 -7.58349 -6.63091 -4.46701 1.07646 1.43961 1.78893 1.88573 2.52011 2.76026 2.77174 2.97397 3.13234 3.16710 3.93010 3.96690 4.12041 4.34636 4.60142 4.70815 4.77604 4.99249 5.10587 5.23454 5.31417 5.32211 5.43900 5.44183 5.47981 5.57828 5.64922 5.72268 5.78306 5.96549 5.99492 6.05176 6.08276 6.09732 6.15044 6.24060 6.34325 6.37980 6.44210 6.47245 6.50817 6.55767 6.57693 6.64320 6.90223 6.92505 6.93039 7.13007 7.21477 7.30866 7.48394 7.63050 7.91174 8.00458 8.13651 8.77991 9.20100 9.58688 10.40818 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.003620 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.746458 B = 7732.865916 C = 8803.801994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.129 3.871 3 N -0.321 5.321 4 N -0.330 5.330 5 C 0.170 3.830 6 C -0.127 4.127 7 C -0.103 4.103 8 C -0.140 4.140 9 C -0.091 4.091 10 C -0.136 4.136 11 C 0.114 3.886 12 C -0.260 4.260 13 C 0.575 3.425 14 O -0.589 6.589 15 N -0.466 5.466 16 C -0.345 4.345 17 H 0.105 0.895 18 C 0.070 3.930 19 N -0.865 5.865 20 Si 0.882 3.118 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.257 1.257 24 C 0.144 3.856 25 C -0.084 4.084 26 C -0.100 4.100 27 C -0.131 4.131 28 C -0.130 4.130 29 C -0.129 4.129 30 C -0.095 4.095 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.232 0.768 40 H 0.279 0.721 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 4.343 -2.846 5.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.040 4.040 3 N -0.141 5.141 4 N -0.103 5.103 5 C 0.077 3.923 6 C -0.147 4.147 7 C -0.122 4.122 8 C -0.158 4.158 9 C -0.110 4.110 10 C -0.156 4.156 11 C -0.029 4.029 12 C -0.273 4.273 13 C 0.366 3.634 14 O -0.473 6.473 15 N -0.187 5.187 16 C -0.473 4.473 17 H 0.122 0.878 18 C -0.138 4.138 19 N -0.500 5.500 20 Si 0.709 3.291 21 H -0.197 1.197 22 H -0.215 1.215 23 H -0.181 1.181 24 C 0.022 3.978 25 C -0.086 4.086 26 C -0.118 4.118 27 C -0.149 4.149 28 C -0.148 4.148 29 C -0.147 4.147 30 C -0.114 4.114 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.163 0.837 39 H 0.247 0.753 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.145 0.855 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.160 5.509 -2.648 6.221 hybrid contribution 0.245 -1.629 0.477 1.715 sum -0.915 3.880 -2.171 4.539 Atomic orbital electron populations 1.20228 0.86055 1.03308 1.03040 1.22537 0.96947 0.89381 0.95128 1.76975 0.85810 1.23029 1.28281 1.45754 1.04089 1.05016 1.55423 1.17633 0.84237 0.89733 1.00722 1.20876 1.00221 0.91098 1.02458 1.20975 0.92030 0.99507 0.99654 1.21162 0.97190 0.95335 1.02147 1.20988 0.98415 0.93111 0.98501 1.21177 0.90137 1.02019 1.02279 1.25478 1.02388 0.82346 0.92726 1.20195 0.91694 0.94472 1.20982 1.17364 0.84993 0.83758 0.77266 1.90576 1.17281 1.84389 1.55102 1.43405 1.07049 1.02416 1.65800 1.19062 0.80125 1.30668 1.17435 0.87799 1.25500 0.95126 0.97261 0.95916 1.69602 1.00576 1.39356 1.40477 0.86802 0.79890 0.81279 0.81100 1.19712 1.21475 1.18116 1.20594 0.99574 0.85310 0.92311 1.20335 0.93401 0.97385 0.97434 1.21213 0.96755 0.98316 0.95554 1.21058 0.98954 1.00370 0.94529 1.21024 0.93699 1.00802 0.99278 1.21056 0.96526 1.01338 0.95827 1.21125 0.99048 0.97388 0.93804 0.90623 0.91810 0.88824 0.84825 0.85623 0.85901 0.85090 0.83740 0.75271 0.91043 0.91729 0.90144 0.85530 0.86750 0.86927 0.86671 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 9.85 36.00 0.35 -0.77 16 2 C 0.13 2.60 7.26 -81.98 -0.60 2.00 16 3 N -0.32 -6.43 11.78 33.91 0.40 -6.03 16 4 N -0.33 -6.54 3.77 -10.19 -0.04 -6.58 16 5 C 0.17 2.94 6.67 -83.61 -0.56 2.38 16 6 C -0.13 -1.90 9.66 -39.40 -0.38 -2.28 16 7 C -0.10 -1.25 10.04 -39.61 -0.40 -1.64 16 8 C -0.14 -1.61 10.04 -39.55 -0.40 -2.01 16 9 C -0.09 -1.19 10.04 -39.61 -0.40 -1.59 16 10 C -0.14 -2.17 9.45 -39.40 -0.37 -2.54 16 11 C 0.11 2.42 9.02 -16.39 -0.15 2.27 16 12 C -0.26 -5.74 6.03 -105.05 -0.63 -6.37 16 13 C 0.58 13.32 7.63 -12.56 -0.10 13.22 16 14 O -0.59 -13.84 14.17 5.25 0.07 -13.77 16 15 N -0.47 -10.62 2.06 -117.34 -0.24 -10.86 16 16 C -0.35 -8.09 6.75 -14.98 -0.10 -8.19 16 17 H 0.10 2.58 6.23 -52.49 -0.33 2.26 16 18 C 0.07 1.66 5.48 -17.46 -0.10 1.56 16 19 N -0.87 -20.85 13.95 55.50 0.77 -20.07 16 20 Si 0.88 19.12 24.77 -169.99 -4.21 14.91 16 21 H -0.27 -5.66 7.07 56.52 0.40 -5.26 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.26 -5.69 6.40 56.52 0.36 -5.33 16 24 C 0.14 3.04 3.80 -5.20 -0.02 3.02 16 25 C -0.08 -1.64 5.46 -104.63 -0.57 -2.21 16 26 C -0.10 -1.81 9.70 -39.58 -0.38 -2.19 16 27 C -0.13 -2.06 10.05 -39.58 -0.40 -2.45 16 28 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 29 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 30 C -0.10 -1.74 9.70 -39.58 -0.38 -2.12 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.64 6.73 -51.93 -0.35 1.29 16 34 H 0.13 2.00 7.69 -52.49 -0.40 1.59 16 35 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.14 2.49 6.74 -52.49 -0.35 2.14 16 39 H 0.23 5.05 3.80 -52.48 -0.20 4.85 16 40 H 0.28 6.41 8.32 -40.82 -0.34 6.07 16 41 H 0.06 1.36 3.50 -51.93 -0.18 1.18 16 42 H 0.08 1.69 7.35 -51.92 -0.38 1.30 16 43 H 0.13 2.33 7.63 -52.48 -0.40 1.93 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 46 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 47 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -27.23 388.49 -9.34 -36.57 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.58 Total: 14.67 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -6.37 Total: -14.69 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.89 Total: -43.54 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.07 Total: -13.77 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.21 Total: 14.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -27.23 -9.34 -36.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069348021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.189 kcal (2) G-P(sol) polarization free energy of solvation -27.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds