Wall clock time and date at job start Tue Mar 31 2020 05:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30473 * 125.96938 * 2 1 4 4 N 1.39931 * 108.93480 * 180.16273 * 3 2 1 5 5 C 1.40141 * 125.76764 * 179.81143 * 4 3 2 6 6 C 1.38845 * 120.06856 * 354.17986 * 5 4 3 7 7 C 1.38121 * 119.93122 * 179.97438 * 6 5 4 8 8 C 1.38275 * 120.06853 * 0.02562 * 7 6 5 9 9 C 1.38285 * 120.13783 * 359.97438 * 8 7 6 10 10 C 1.38117 * 120.06410 * 0.02562 * 9 8 7 11 11 C 1.34571 * 108.46107 * 359.54256 * 4 3 2 12 12 C 1.38125 * 107.36588 * 0.26782 * 11 4 3 13 13 C 1.47341 * 126.41407 * 179.97438 * 12 11 4 14 14 O 1.21627 * 119.99700 * 172.64903 * 13 12 11 15 15 N 1.34772 * 119.99931 * 352.65262 * 13 12 11 16 16 C 1.36983 * 120.00314 * 0.60079 * 15 13 12 17 17 H 1.08002 * 119.99479 * 307.23582 * 16 15 13 18 18 C 1.38974 * 120.00217 * 127.23602 * 16 15 13 19 19 N 1.31408 * 119.99911 * 182.55448 * 18 16 15 20 20 Si 1.86802 * 119.99938 * 2.56116 * 18 16 15 21 21 H 1.48495 * 109.47094 * 94.17492 * 20 18 16 22 22 H 1.48499 * 109.47012 * 214.17515 * 20 18 16 23 23 H 1.48497 * 109.47294 * 334.17198 * 20 18 16 24 24 C 1.46497 * 119.99976 * 180.60108 * 15 13 12 25 25 C 1.50699 * 109.47380 * 89.99956 * 24 15 13 26 26 C 1.38231 * 119.99720 * 269.72661 * 25 24 15 27 27 C 1.38237 * 120.00080 * 179.76590 * 26 25 24 28 28 C 1.38240 * 119.99595 * 0.50510 * 27 26 25 29 29 C 1.38235 * 120.00216 * 359.74932 * 28 27 26 30 30 C 1.38233 * 119.99715 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.47004 * 270.33821 * 1 2 3 32 32 H 1.09002 * 109.46887 * 30.33104 * 1 2 3 33 33 H 1.08996 * 109.47163 * 150.33087 * 1 2 3 34 34 H 1.07996 * 120.03535 * 0.02562 * 6 5 4 35 35 H 1.08007 * 119.96146 * 179.72452 * 7 6 5 36 36 H 1.08002 * 119.93413 * 180.02562 * 8 7 6 37 37 H 1.07992 * 119.96591 * 180.02562 * 9 8 7 38 38 H 1.08002 * 120.03312 * 180.02562 * 10 9 8 39 39 H 1.08003 * 126.31356 * 180.26539 * 11 4 3 40 40 H 0.97001 * 119.99730 * 185.00546 * 19 18 16 41 41 H 1.09004 * 109.47385 * 210.00120 * 24 15 13 42 42 H 1.09010 * 109.47129 * 329.99612 * 24 15 13 43 43 H 1.08005 * 120.00235 * 0.02562 * 26 25 24 44 44 H 1.08002 * 120.00579 * 180.23667 * 27 26 25 45 45 H 1.08003 * 119.99345 * 179.72541 * 28 27 26 46 46 H 1.07993 * 120.00036 * 179.97438 * 29 28 27 47 47 H 1.07998 * 120.00184 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0560 0.0000 4 7 3.6112 0.6460 -0.0038 5 6 4.7275 1.4933 -0.0087 6 6 4.5585 2.8659 -0.1320 7 6 5.6607 3.6983 -0.1359 8 6 6.9314 3.1660 -0.0178 9 6 7.1030 1.7994 0.1052 10 6 6.0048 0.9618 0.1098 11 6 3.6448 -0.6992 0.0041 12 6 2.3372 -1.1442 0.0067 13 6 1.8911 -2.5485 0.0143 14 8 0.7114 -2.8110 0.1507 15 7 2.7904 -3.5419 -0.1296 16 6 4.1206 -3.2466 -0.2708 17 1 4.4410 -2.5479 -1.0294 18 6 5.0577 -3.8461 0.5623 19 7 6.3279 -3.5252 0.4604 20 14 4.5116 -5.1081 1.8266 21 1 4.6457 -6.4719 1.2545 22 1 5.3616 -4.9940 3.0389 23 1 3.0934 -4.8616 2.1915 24 6 2.3454 -4.9376 -0.1352 25 6 2.0304 -5.3589 -1.5474 26 6 0.7522 -5.1968 -2.0482 27 6 0.4644 -5.5787 -3.3452 28 6 1.4523 -6.1323 -4.1380 29 6 2.7292 -6.2993 -3.6355 30 6 3.0181 -5.9131 -2.3401 31 1 -0.3633 0.0061 1.0276 32 1 -0.3633 0.8870 -0.5190 33 1 -0.3633 -0.8929 -0.5087 34 1 3.5663 3.2823 -0.2239 35 1 5.5301 4.7658 -0.2363 36 1 7.7917 3.8190 -0.0207 37 1 8.0966 1.3867 0.1977 38 1 6.1393 -0.1055 0.2063 39 1 4.5307 -1.3169 0.0077 40 1 6.9908 -3.9950 0.9902 41 1 3.1355 -5.5726 0.2656 42 1 1.4519 -5.0366 0.4814 43 1 -0.0206 -4.7679 -1.4274 44 1 -0.5333 -5.4486 -3.7377 45 1 1.2262 -6.4348 -5.1499 46 1 3.5008 -6.7322 -4.2548 47 1 4.0156 -6.0438 -1.9473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069348021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:05 Heat of formation + Delta-G solvation = 104.199073 kcal Electronic energy + Delta-G solvation = -32021.615912 eV Core-core repulsion = 27943.225749 eV Total energy + Delta-G solvation = -4078.390163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.68556 -40.82271 -39.93852 -39.36439 -36.91423 -34.97416 -34.22333 -32.91758 -32.10161 -31.71940 -31.50529 -30.79024 -28.50391 -27.52615 -26.88561 -24.54572 -23.56921 -23.36988 -22.65243 -22.13184 -21.20587 -20.51502 -19.78151 -18.27646 -17.97858 -17.46225 -17.08970 -16.80613 -16.61831 -16.25816 -15.95281 -15.82739 -15.68319 -15.58122 -15.26184 -14.80000 -14.51757 -14.41873 -14.31493 -14.24109 -14.03325 -13.93199 -13.85634 -13.46072 -13.34096 -13.29007 -13.06744 -12.94131 -12.56081 -12.33397 -12.20966 -12.03768 -11.87773 -11.80075 -11.57847 -11.06252 -10.99320 -10.63918 -10.03596 -10.00430 -9.76063 -9.64714 -9.57746 -9.02181 -8.49115 -6.33907 -0.21094 0.34498 0.44969 0.56219 0.97446 1.18315 1.22987 1.32740 1.33526 1.37796 2.14933 2.53639 2.61651 2.80601 2.90523 3.10649 3.36074 3.86787 3.88226 3.90589 3.98407 4.02414 4.19335 4.20875 4.25938 4.28126 4.33970 4.43347 4.43912 4.50994 4.58445 4.69237 4.74635 4.77899 4.79728 4.81314 4.93084 5.03865 5.05168 5.14212 5.22343 5.32377 5.40618 5.49886 5.51407 5.62422 5.63814 5.64907 5.81185 5.82008 5.99838 6.16498 6.18027 6.20373 6.57182 6.91868 7.37409 7.77372 8.57004 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.003620 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.746458 B = 7732.865916 C = 8803.801994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.120 3.880 3 N -0.322 5.322 4 N -0.326 5.326 5 C 0.127 3.873 6 C -0.133 4.133 7 C -0.093 4.093 8 C -0.120 4.120 9 C -0.092 4.092 10 C -0.152 4.152 11 C 0.111 3.889 12 C -0.289 4.289 13 C 0.567 3.433 14 O -0.599 6.599 15 N -0.471 5.471 16 C -0.336 4.336 17 H 0.083 0.917 18 C 0.046 3.954 19 N -0.886 5.886 20 Si 0.918 3.082 21 H -0.257 1.257 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.145 3.855 25 C -0.107 4.107 26 C -0.115 4.115 27 C -0.128 4.128 28 C -0.120 4.120 29 C -0.128 4.128 30 C -0.114 4.114 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.218 0.782 40 H 0.282 0.718 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.144 0.856 45 H 0.153 0.847 46 H 0.143 0.857 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 5.722 -4.264 7.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.049 4.049 3 N -0.142 5.142 4 N -0.098 5.098 5 C 0.035 3.965 6 C -0.153 4.153 7 C -0.111 4.111 8 C -0.139 4.139 9 C -0.111 4.111 10 C -0.173 4.173 11 C -0.035 4.035 12 C -0.303 4.303 13 C 0.358 3.642 14 O -0.485 6.485 15 N -0.192 5.192 16 C -0.464 4.464 17 H 0.100 0.900 18 C -0.160 4.160 19 N -0.522 5.522 20 Si 0.745 3.255 21 H -0.182 1.182 22 H -0.215 1.215 23 H -0.193 1.193 24 C 0.023 3.977 25 C -0.108 4.108 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.138 4.138 29 C -0.146 4.146 30 C -0.133 4.133 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.182 0.818 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.234 0.766 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.162 0.838 45 H 0.170 0.830 46 H 0.161 0.839 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.696 6.897 -4.073 8.040 hybrid contribution 0.206 -1.917 0.843 2.104 sum -0.489 4.980 -3.229 5.956 Atomic orbital electron populations 1.20270 0.83789 1.03950 1.03945 1.23009 0.98414 0.88571 0.94865 1.76912 0.85939 1.22978 1.28385 1.45936 1.04746 1.04740 1.54389 1.18055 0.83779 0.90653 1.03981 1.21044 1.01378 0.90237 1.02630 1.21433 0.91162 1.01015 0.97527 1.21661 0.98427 0.94870 0.98893 1.21322 0.98293 0.93878 0.97589 1.21154 0.90965 1.01367 1.03780 1.25154 1.01753 0.83327 0.93263 1.20327 0.92553 0.94595 1.22779 1.17621 0.85029 0.84370 0.77155 1.90541 1.17475 1.84730 1.55730 1.43482 1.06709 1.03194 1.65789 1.18804 0.80559 1.30188 1.16805 0.89969 1.25815 0.95108 0.98295 0.96783 1.69648 1.01067 1.40130 1.41376 0.86236 0.78742 0.80790 0.79730 1.18205 1.21547 1.19303 1.20576 0.98951 0.84282 0.93913 1.20236 0.94602 0.99284 0.96721 1.21223 0.95954 0.99303 0.96922 1.21413 1.00721 0.99119 0.93337 1.21476 0.92684 0.98934 1.00734 1.21398 0.97958 1.00367 0.94830 1.21161 0.98337 0.98572 0.95209 0.89506 0.89206 0.89962 0.85139 0.81794 0.81643 0.82924 0.86307 0.76583 0.90735 0.92041 0.90869 0.86694 0.83814 0.82969 0.83902 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.04 9.85 71.24 0.70 -1.34 16 2 C 0.12 4.98 7.26 43.53 0.32 5.30 16 3 N -0.32 -13.21 11.78 -46.62 -0.55 -13.76 16 4 N -0.33 -13.51 3.77 -186.14 -0.70 -14.22 16 5 C 0.13 4.50 6.67 38.10 0.25 4.75 16 6 C -0.13 -3.86 9.66 22.39 0.22 -3.65 16 7 C -0.09 -1.93 10.04 22.25 0.22 -1.71 16 8 C -0.12 -2.30 10.04 22.29 0.22 -2.08 16 9 C -0.09 -2.26 10.04 22.25 0.22 -2.03 16 10 C -0.15 -5.02 9.45 22.39 0.21 -4.81 16 11 C 0.11 5.02 9.02 84.25 0.76 5.78 16 12 C -0.29 -13.45 6.03 -20.14 -0.12 -13.58 16 13 C 0.57 27.66 7.63 86.64 0.66 28.32 16 14 O -0.60 -29.44 14.17 -4.12 -0.06 -29.49 16 15 N -0.47 -22.64 2.06 -643.39 -1.33 -23.97 16 16 C -0.34 -16.67 6.75 84.07 0.57 -16.11 16 17 H 0.08 4.42 6.23 -2.91 -0.02 4.40 16 18 C 0.05 2.28 5.48 84.93 0.47 2.74 16 19 N -0.89 -44.40 13.95 21.67 0.30 -44.10 16 20 Si 0.92 40.51 24.77 68.60 1.70 42.21 16 21 H -0.26 -10.65 7.07 99.48 0.70 -9.95 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.27 -12.25 6.40 99.48 0.64 -11.62 16 24 C 0.14 6.38 3.80 85.63 0.33 6.71 16 25 C -0.11 -4.29 5.46 -19.87 -0.11 -4.40 16 26 C -0.12 -4.22 9.70 22.27 0.22 -4.00 16 27 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 28 C -0.12 -3.21 10.05 22.27 0.22 -2.98 16 29 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16 30 C -0.11 -4.22 9.70 22.27 0.22 -4.00 16 31 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.08 2.94 6.73 -2.39 -0.02 2.93 16 34 H 0.13 3.81 7.69 -2.91 -0.02 3.79 16 35 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 36 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 37 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.12 4.48 6.74 -2.91 -0.02 4.46 16 39 H 0.22 10.39 3.80 -2.91 -0.01 10.38 16 40 H 0.28 13.35 8.32 -92.71 -0.77 12.58 16 41 H 0.06 2.69 3.50 -2.39 -0.01 2.68 16 42 H 0.07 3.25 7.35 -2.38 -0.02 3.23 16 43 H 0.11 4.39 7.63 -2.91 -0.02 4.37 16 44 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 45 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 47 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -62.69 388.49 6.33 -56.37 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: 0.94 Total: 41.18 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 6.02 Total: -14.23 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -2.28 Total: -96.04 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.06 Total: -29.49 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.70 Total: 42.21 kcal Total: -62.69 6.33 -56.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069348021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.565 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds