Wall clock time and date at job start Tue Mar 31 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47003 * 2 1 4 4 N 1.46499 * 109.46897 * 119.99975 * 2 1 3 5 5 C 1.46504 * 120.00119 * 121.59972 * 4 2 1 6 6 C 1.50697 * 109.47000 * 270.00006 * 5 4 2 7 7 H 1.07994 * 120.00075 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99532 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99614 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00400 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47199 * 89.99901 * 10 8 6 12 12 H 1.48506 * 109.47042 * 209.99984 * 10 8 6 13 13 H 1.48500 * 109.46746 * 329.99541 * 10 8 6 14 14 C 1.34776 * 120.00284 * 301.59956 * 4 2 1 15 15 O 1.21557 * 120.00029 * 212.32110 * 14 4 2 16 16 C 1.47850 * 119.99918 * 32.31257 * 14 4 2 17 17 C 1.39574 * 120.14028 * 137.51486 * 16 14 4 18 18 C 1.37963 * 119.85133 * 180.02562 * 17 16 14 19 19 C 1.38360 * 120.14267 * 0.02562 * 18 17 16 20 20 S 1.76201 * 119.85110 * 179.97438 * 19 18 17 21 21 O 1.42099 * 104.27554 * 206.06711 * 20 19 18 22 22 O 1.42099 * 104.27658 * 333.92551 * 20 19 18 23 23 C 1.81396 * 104.45107 * 89.99868 * 20 19 18 24 24 F 1.39907 * 109.47289 * 300.00130 * 23 20 19 25 25 F 1.39903 * 109.47218 * 59.99709 * 23 20 19 26 26 C 1.38360 * 120.29360 * 0.22998 * 19 18 17 27 27 C 1.37961 * 120.14468 * 359.48993 * 26 19 18 28 28 H 1.08998 * 109.47248 * 253.49285 * 1 2 3 29 29 H 1.09004 * 109.47160 * 13.48710 * 1 2 3 30 30 H 1.09000 * 109.47158 * 133.49012 * 1 2 3 31 31 H 1.08993 * 109.47030 * 240.00033 * 2 1 3 32 32 H 1.09001 * 109.46950 * 223.64682 * 3 2 1 33 33 H 1.08991 * 109.47395 * 343.64943 * 3 2 1 34 34 H 1.09005 * 109.46943 * 103.65171 * 3 2 1 35 35 H 1.09003 * 109.46607 * 29.99886 * 5 4 2 36 36 H 1.09001 * 109.46924 * 149.99470 * 5 4 2 37 37 H 0.96998 * 120.00237 * 179.97438 * 9 8 6 38 38 H 1.07998 * 120.07509 * 0.02562 * 17 16 14 39 39 H 1.08003 * 119.92661 * 180.02562 * 18 17 16 40 40 H 1.08996 * 109.47282 * 179.97438 * 23 20 19 41 41 H 1.07999 * 119.92380 * 179.74911 * 26 19 18 42 42 H 1.07998 * 120.07437 * 180.25192 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8892 -1.8610 1.0621 6 6 2.0469 -3.1087 0.9932 7 1 0.9706 -3.0371 1.0446 8 6 2.6505 -4.3416 0.8646 9 7 1.9154 -5.4305 0.8049 10 14 4.5123 -4.4656 0.7764 11 1 5.0638 -4.6153 2.1469 12 1 4.8916 -5.6456 -0.0416 13 1 5.0613 -3.2344 0.1535 14 6 1.6663 -0.2493 2.4200 15 8 2.4361 -0.3674 3.3534 16 6 0.3440 0.3787 2.6274 17 6 -0.4115 0.0646 3.7582 18 6 -1.6449 0.6537 3.9454 19 6 -2.1335 1.5536 3.0149 20 16 -3.7100 2.3010 3.2614 21 8 -4.1544 2.6219 1.9504 22 8 -4.4176 1.3687 4.0672 23 6 -3.3531 3.8116 4.2001 24 9 -2.7399 3.4741 5.4115 25 9 -2.4970 4.6312 3.4567 26 6 -1.3919 1.8653 1.8892 27 6 -0.1545 1.2877 1.6928 28 1 -0.3633 -0.2920 0.9853 29 1 -0.3634 0.9994 -0.2397 30 1 -0.3633 -0.7073 -0.7456 31 1 1.8933 -0.5138 -0.8899 32 1 2.8622 1.5372 -0.7093 33 1 1.2315 2.1138 -0.2893 34 1 2.3898 1.7042 0.9987 35 1 3.4808 -1.7711 0.1510 36 1 3.5549 -1.9190 1.9233 37 1 2.3399 -6.2979 0.7140 38 1 -0.0314 -0.6380 4.4849 39 1 -2.2303 0.4118 4.8202 40 1 -4.2831 4.3440 4.3991 41 1 -1.7808 2.5655 1.1647 42 1 0.4251 1.5349 0.8158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069415141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:19 Heat of formation + Delta-G solvation = -67.392155 kcal Electronic energy + Delta-G solvation = -31358.681634 eV Core-core repulsion = 26685.939293 eV Total energy + Delta-G solvation = -4672.742341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.71531 -47.87335 -41.25380 -38.26385 -37.81532 -36.74509 -36.66065 -33.60844 -32.10321 -31.52705 -30.60251 -28.09317 -27.95304 -27.05493 -24.63283 -23.39490 -22.14574 -21.85838 -20.16268 -18.98429 -18.79375 -18.60060 -18.14344 -17.64026 -17.02754 -16.53684 -16.41039 -15.82273 -15.58687 -15.10585 -14.93483 -14.69769 -14.66239 -14.37165 -14.15270 -14.12787 -13.95766 -13.54469 -13.29384 -13.23942 -12.89293 -12.77801 -12.65102 -12.57366 -12.52409 -12.19612 -12.07810 -11.57901 -11.43042 -11.30464 -11.16618 -11.00750 -10.91631 -10.65311 -10.39213 -10.25098 -9.66914 -9.47700 -9.28817 -8.69468 -8.52555 -7.82389 -6.19124 -4.20222 -1.03013 0.39882 1.25067 1.93118 2.66509 2.97557 3.08124 3.22227 3.26240 3.28489 3.30833 3.43262 3.57334 3.66679 3.97095 4.30472 4.56117 4.61964 4.72559 4.82495 5.02729 5.12513 5.13942 5.22143 5.31688 5.51558 5.58255 5.64350 5.72272 5.77266 5.85017 5.96461 6.04269 6.15470 6.21813 6.41923 6.59808 6.63781 6.80550 7.23232 7.47262 8.01075 8.33140 8.53854 8.84147 9.40132 10.93570 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.002867 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.237287 B = 9765.411105 C =10025.200399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.134 3.866 3 C -0.182 4.182 4 N -0.599 5.599 5 C 0.218 3.782 6 C -0.541 4.541 7 H 0.077 0.923 8 C 0.075 3.925 9 N -0.893 5.893 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.568 3.432 15 O -0.522 6.522 16 C -0.076 4.076 17 C -0.082 4.082 18 C -0.032 4.032 19 C -0.637 4.637 20 S 2.476 3.524 21 O -0.889 6.889 22 O -0.889 6.889 23 C -0.211 4.211 24 F -0.163 7.163 25 F -0.164 7.164 26 C -0.059 4.059 27 C -0.112 4.112 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 20.726 1.999 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.029 3.971 3 C -0.240 4.240 4 N -0.332 5.332 5 C 0.098 3.902 6 C -0.579 4.579 7 H 0.095 0.905 8 C -0.128 4.128 9 N -0.530 5.530 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.355 3.645 15 O -0.398 6.398 16 C -0.080 4.080 17 C -0.102 4.102 18 C -0.052 4.052 19 C -0.728 4.728 20 S 2.647 3.353 21 O -0.887 6.887 22 O -0.886 6.886 23 C -0.346 4.346 24 F -0.144 7.144 25 F -0.145 7.145 26 C -0.078 4.078 27 C -0.129 4.129 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.698 20.234 2.262 22.999 hybrid contribution 1.631 -0.058 0.238 1.649 sum -9.067 20.176 2.500 22.260 Atomic orbital electron populations 1.23753 0.95879 1.01804 1.04473 1.21107 0.93843 0.92308 0.89792 1.22746 1.01846 0.96027 1.03358 1.47755 1.50957 1.31002 1.03453 1.19774 0.90176 0.82537 0.97681 1.21385 0.95416 0.89245 1.51857 0.90522 1.24847 0.98196 0.95488 0.94250 1.69889 1.35606 0.98137 1.49401 0.86865 0.85985 0.78122 0.78859 1.19829 1.20952 1.18945 1.18009 0.85296 0.77802 0.83414 1.90735 1.51597 1.54809 1.42667 1.20741 0.95843 0.96471 0.94926 1.21319 0.93523 0.99078 0.96289 1.20804 0.94861 0.92503 0.96990 1.29836 1.22834 1.14678 1.05483 1.06943 0.76357 0.76053 0.75936 1.93655 1.79254 1.83275 1.32481 1.93666 1.69858 1.54386 1.70686 1.33091 0.96745 1.15131 0.89600 1.93108 1.84526 1.92628 1.44179 1.93097 1.71921 1.74343 1.75160 1.20716 0.93604 0.98307 0.95218 1.23154 0.97104 0.94013 0.98677 0.88957 0.90868 0.91623 0.88015 0.91154 0.90876 0.91592 0.94897 0.94296 0.92391 0.83884 0.83549 0.83014 0.83630 0.79808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 7.71 37.16 0.29 -2.47 16 2 C 0.13 1.99 3.27 -67.93 -0.22 1.77 16 3 C -0.18 -2.05 8.36 37.16 0.31 -1.74 16 4 N -0.60 -11.76 2.38 -168.57 -0.40 -12.16 16 5 C 0.22 5.09 4.39 -5.19 -0.02 5.07 16 6 C -0.54 -14.77 9.94 -34.44 -0.34 -15.11 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 10 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 14 C 0.57 11.30 5.87 -12.33 -0.07 11.23 16 15 O -0.52 -12.04 16.79 5.32 0.09 -11.96 16 16 C -0.08 -1.23 4.26 -104.97 -0.45 -1.68 16 17 C -0.08 -1.24 9.67 -39.18 -0.38 -1.62 16 18 C -0.03 -0.40 9.45 -39.64 -0.37 -0.78 16 19 C -0.64 -7.25 5.65 -39.49 -0.22 -7.47 16 20 S 2.48 22.01 5.39 -107.50 -0.58 21.43 16 21 O -0.89 -9.36 17.10 -57.54 -0.98 -10.34 16 22 O -0.89 -9.83 17.11 -57.54 -0.98 -10.81 16 23 C -0.21 -1.44 5.94 101.05 0.60 -0.84 16 24 F -0.16 -1.44 17.37 2.25 0.04 -1.40 16 25 F -0.16 -1.38 17.37 2.25 0.04 -1.34 16 26 C -0.06 -0.67 9.19 -39.64 -0.36 -1.03 16 27 C -0.11 -1.44 4.88 -39.18 -0.19 -1.63 16 28 H 0.09 1.45 3.99 -61.57 -0.25 1.21 16 29 H 0.07 0.74 5.23 -51.93 -0.27 0.46 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.51 7.81 -51.93 -0.41 1.10 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.60 6.18 -51.93 -0.32 0.28 16 34 H 0.07 0.83 6.82 -51.93 -0.35 0.48 16 35 H 0.03 0.73 6.99 -51.93 -0.36 0.37 16 36 H 0.04 0.97 6.79 -51.93 -0.35 0.62 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.15 1.49 7.56 -52.48 -0.40 1.09 16 40 H 0.15 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.15 1.23 7.55 -52.49 -0.40 0.83 16 42 H 0.19 2.05 1.07 -53.69 -0.06 2.00 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -36.01 358.59 -7.26 -43.26 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.44 Total: 1.90 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.54 Total: -14.30 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.37 Total: -37.99 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.88 Total: -33.11 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.08 Total: -2.75 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 22.01 SS G_CDS: -0.58 Total: 21.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.01 -7.26 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069415141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.129 kcal (2) G-P(sol) polarization free energy of solvation -36.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds