Wall clock time and date at job start Tue Mar 31 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47003 * 2 1 4 4 N 1.46499 * 109.46897 * 119.99975 * 2 1 3 5 5 C 1.46504 * 120.00119 * 121.59972 * 4 2 1 6 6 C 1.50697 * 109.47000 * 270.00006 * 5 4 2 7 7 H 1.07994 * 120.00075 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99532 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99614 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00400 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47199 * 89.99901 * 10 8 6 12 12 H 1.48506 * 109.47042 * 209.99984 * 10 8 6 13 13 H 1.48500 * 109.46746 * 329.99541 * 10 8 6 14 14 C 1.34776 * 120.00284 * 301.59956 * 4 2 1 15 15 O 1.21557 * 120.00029 * 212.32110 * 14 4 2 16 16 C 1.47850 * 119.99918 * 32.31257 * 14 4 2 17 17 C 1.39574 * 120.14028 * 137.51486 * 16 14 4 18 18 C 1.37963 * 119.85133 * 180.02562 * 17 16 14 19 19 C 1.38360 * 120.14267 * 0.02562 * 18 17 16 20 20 S 1.76201 * 119.85110 * 179.97438 * 19 18 17 21 21 O 1.42099 * 104.27554 * 206.06711 * 20 19 18 22 22 O 1.42099 * 104.27658 * 333.92551 * 20 19 18 23 23 C 1.81396 * 104.45107 * 89.99868 * 20 19 18 24 24 F 1.39907 * 109.47289 * 300.00130 * 23 20 19 25 25 F 1.39903 * 109.47218 * 59.99709 * 23 20 19 26 26 C 1.38360 * 120.29360 * 0.22998 * 19 18 17 27 27 C 1.37961 * 120.14468 * 359.48993 * 26 19 18 28 28 H 1.08998 * 109.47248 * 253.49285 * 1 2 3 29 29 H 1.09004 * 109.47160 * 13.48710 * 1 2 3 30 30 H 1.09000 * 109.47158 * 133.49012 * 1 2 3 31 31 H 1.08993 * 109.47030 * 240.00033 * 2 1 3 32 32 H 1.09001 * 109.46950 * 223.64682 * 3 2 1 33 33 H 1.08991 * 109.47395 * 343.64943 * 3 2 1 34 34 H 1.09005 * 109.46943 * 103.65171 * 3 2 1 35 35 H 1.09003 * 109.46607 * 29.99886 * 5 4 2 36 36 H 1.09001 * 109.46924 * 149.99470 * 5 4 2 37 37 H 0.96998 * 120.00237 * 179.97438 * 9 8 6 38 38 H 1.07998 * 120.07509 * 0.02562 * 17 16 14 39 39 H 1.08003 * 119.92661 * 180.02562 * 18 17 16 40 40 H 1.08996 * 109.47282 * 179.97438 * 23 20 19 41 41 H 1.07999 * 119.92380 * 179.74911 * 26 19 18 42 42 H 1.07998 * 120.07437 * 180.25192 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8892 -1.8610 1.0621 6 6 2.0469 -3.1087 0.9932 7 1 0.9706 -3.0371 1.0446 8 6 2.6505 -4.3416 0.8646 9 7 1.9154 -5.4305 0.8049 10 14 4.5123 -4.4656 0.7764 11 1 5.0638 -4.6153 2.1469 12 1 4.8916 -5.6456 -0.0416 13 1 5.0613 -3.2344 0.1535 14 6 1.6663 -0.2493 2.4200 15 8 2.4361 -0.3674 3.3534 16 6 0.3440 0.3787 2.6274 17 6 -0.4115 0.0646 3.7582 18 6 -1.6449 0.6537 3.9454 19 6 -2.1335 1.5536 3.0149 20 16 -3.7100 2.3010 3.2614 21 8 -4.1544 2.6219 1.9504 22 8 -4.4176 1.3687 4.0672 23 6 -3.3531 3.8116 4.2001 24 9 -2.7399 3.4741 5.4115 25 9 -2.4970 4.6312 3.4567 26 6 -1.3919 1.8653 1.8892 27 6 -0.1545 1.2877 1.6928 28 1 -0.3633 -0.2920 0.9853 29 1 -0.3634 0.9994 -0.2397 30 1 -0.3633 -0.7073 -0.7456 31 1 1.8933 -0.5138 -0.8899 32 1 2.8622 1.5372 -0.7093 33 1 1.2315 2.1138 -0.2893 34 1 2.3898 1.7042 0.9987 35 1 3.4808 -1.7711 0.1510 36 1 3.5549 -1.9190 1.9233 37 1 2.3399 -6.2979 0.7140 38 1 -0.0314 -0.6380 4.4849 39 1 -2.2303 0.4118 4.8202 40 1 -4.2831 4.3440 4.3991 41 1 -1.7808 2.5655 1.1647 42 1 0.4251 1.5349 0.8158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069415141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:18 Heat of formation + Delta-G solvation = -93.958451 kcal Electronic energy + Delta-G solvation = -31359.833635 eV Core-core repulsion = 26685.939293 eV Total energy + Delta-G solvation = -4673.894342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.099 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.33819 -48.50483 -42.48640 -39.56270 -38.60428 -38.08271 -37.47356 -35.40970 -33.85393 -32.62970 -31.73500 -29.80723 -28.67103 -28.06289 -26.01766 -24.48580 -23.84931 -23.06829 -20.95411 -20.11990 -19.67361 -19.28816 -19.14382 -18.77060 -18.48980 -17.73612 -17.70665 -16.91553 -16.64831 -16.45264 -16.24831 -15.74958 -15.64325 -15.42056 -15.30219 -15.09421 -14.79186 -14.75704 -14.56645 -14.38669 -13.96330 -13.88347 -13.79537 -13.74082 -13.57688 -13.40876 -13.33339 -13.14192 -12.74709 -12.45475 -12.33006 -12.30792 -12.27124 -11.98140 -11.75763 -11.72199 -11.38976 -11.03136 -10.87098 -10.40040 -9.57720 -9.42338 -8.37801 -6.44495 -1.75326 -0.65497 0.22869 1.15491 1.31227 1.33637 1.35435 1.43324 1.99705 2.19840 2.27559 2.40103 2.53184 2.83033 2.96172 3.09194 3.27094 3.35368 3.63631 3.72547 3.80226 4.01863 4.09467 4.19860 4.27596 4.45493 4.54106 4.58761 4.75629 4.77815 4.80447 4.82729 4.85930 4.93009 4.96449 5.14347 5.15026 5.34317 5.41950 5.60306 5.62251 6.19648 6.51493 6.58410 6.96159 7.21836 8.78398 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.002867 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.237287 B = 9765.411105 C =10025.200399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.122 3.878 3 C -0.176 4.176 4 N -0.606 5.606 5 C 0.227 3.773 6 C -0.543 4.543 7 H 0.034 0.966 8 C 0.017 3.983 9 N -0.940 5.940 10 Si 0.944 3.056 11 H -0.276 1.276 12 H -0.275 1.275 13 H -0.238 1.238 14 C 0.562 3.438 15 O -0.571 6.571 16 C -0.106 4.106 17 C -0.105 4.105 18 C -0.038 4.038 19 C -0.644 4.644 20 S 2.503 3.497 21 O -0.901 6.901 22 O -0.913 6.913 23 C -0.196 4.196 24 F -0.173 7.173 25 F -0.168 7.168 26 C -0.055 4.055 27 C -0.103 4.103 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.269 0.731 38 H 0.125 0.875 39 H 0.164 0.836 40 H 0.210 0.790 41 H 0.185 0.815 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 24.360 0.723 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.019 3.981 3 C -0.233 4.233 4 N -0.338 5.338 5 C 0.105 3.895 6 C -0.582 4.582 7 H 0.052 0.948 8 C -0.182 4.182 9 N -0.580 5.580 10 Si 0.767 3.233 11 H -0.202 1.202 12 H -0.200 1.200 13 H -0.162 1.162 14 C 0.351 3.649 15 O -0.451 6.451 16 C -0.110 4.110 17 C -0.125 4.125 18 C -0.056 4.056 19 C -0.731 4.731 20 S 2.674 3.326 21 O -0.899 6.899 22 O -0.910 6.910 23 C -0.334 4.334 24 F -0.154 7.154 25 F -0.149 7.149 26 C -0.074 4.074 27 C -0.121 4.121 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.182 0.818 40 H 0.227 0.773 41 H 0.202 0.798 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.534 23.858 0.928 26.516 hybrid contribution 1.701 -1.112 0.679 2.143 sum -9.832 22.746 1.607 24.832 Atomic orbital electron populations 1.23796 0.95034 1.04164 1.02988 1.21506 0.94780 0.94185 0.87645 1.22705 1.03816 0.93697 1.03119 1.47821 1.50688 1.30125 1.05172 1.19434 0.90011 0.82554 0.97508 1.21579 0.93927 0.91389 1.51277 0.94793 1.25785 1.03712 0.94934 0.93768 1.70035 1.38030 0.98896 1.51006 0.85771 0.79301 0.79405 0.78864 1.20192 1.19986 1.16153 1.18644 0.86259 0.77209 0.82756 1.90680 1.53216 1.57212 1.43950 1.20494 0.94514 0.98901 0.97052 1.21336 0.95071 0.99880 0.96186 1.20959 0.93920 0.92590 0.98174 1.30452 1.23987 1.13804 1.04895 1.06306 0.74578 0.76196 0.75486 1.93639 1.78815 1.83737 1.33670 1.93643 1.69833 1.56437 1.71075 1.32987 0.98700 1.13503 0.88247 1.93105 1.84926 1.92667 1.44725 1.93099 1.72373 1.74170 1.75286 1.21219 0.92608 0.97921 0.95618 1.23336 0.97874 0.92759 0.98124 0.91172 0.86338 0.92541 0.88206 0.89465 0.86844 0.93083 0.92927 0.96170 0.92148 0.85747 0.81828 0.77322 0.79824 0.78030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.32 7.71 71.98 0.56 -4.77 16 2 C 0.12 3.52 3.27 44.99 0.15 3.66 16 3 C -0.18 -3.48 8.36 71.98 0.60 -2.88 16 4 N -0.61 -24.54 2.38 -805.51 -1.92 -26.46 16 5 C 0.23 10.87 4.39 85.63 0.38 11.25 16 6 C -0.54 -31.14 9.94 25.60 0.25 -30.88 16 7 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 8 C 0.02 0.98 5.47 84.66 0.46 1.44 16 9 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 10 Si 0.94 43.58 27.47 68.60 1.88 45.47 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 13 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 14 C 0.56 23.62 5.87 86.79 0.51 24.13 16 15 O -0.57 -28.24 16.79 -3.90 -0.07 -28.30 16 16 C -0.11 -3.57 4.26 -20.09 -0.09 -3.66 16 17 C -0.10 -3.39 9.67 22.53 0.22 -3.17 16 18 C -0.04 -0.94 9.45 22.23 0.21 -0.73 16 19 C -0.64 -13.45 5.65 22.33 0.13 -13.33 16 20 S 2.50 36.99 5.39 -56.49 -0.30 36.69 16 21 O -0.90 -15.73 17.10 -127.65 -2.18 -17.91 16 22 O -0.91 -18.32 17.11 -127.65 -2.18 -20.51 16 23 C -0.20 -1.85 5.94 113.37 0.67 -1.18 16 24 F -0.17 -2.52 17.37 44.97 0.78 -1.74 16 25 F -0.17 -2.10 17.37 44.97 0.78 -1.32 16 26 C -0.06 -1.08 9.19 22.23 0.20 -0.88 16 27 C -0.10 -2.51 4.88 22.53 0.11 -2.40 16 28 H 0.07 2.23 3.99 -11.44 -0.05 2.19 16 29 H 0.12 1.94 5.23 -2.38 -0.01 1.93 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 2.88 7.81 -2.39 -0.02 2.86 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.11 1.31 6.18 -2.39 -0.01 1.30 16 34 H 0.05 1.21 6.82 -2.38 -0.02 1.19 16 35 H 0.05 2.31 6.99 -2.39 -0.02 2.29 16 36 H 0.02 1.04 6.79 -2.39 -0.02 1.03 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.16 3.35 7.56 -2.91 -0.02 3.33 16 40 H 0.21 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.18 2.17 7.55 -2.91 -0.02 2.15 16 42 H 0.20 3.93 1.07 -4.04 0.00 3.93 16 Total: -1.00 -84.74 358.59 2.46 -82.28 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.00 Total: 13.22 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 4.36 Total: -23.41 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.62 Total: -84.46 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -4.43 Total: -66.73 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 1.56 Total: -3.06 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.47 kcal Atomic # 16 Polarization: 36.99 SS G_CDS: -0.30 Total: 36.69 kcal Total: -84.74 2.46 -82.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069415141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.677 kcal (2) G-P(sol) polarization free energy of solvation -84.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds