Wall clock time and date at job start Tue Mar 31 2020 05:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47352 * 239.99944 * 3 2 1 5 5 H 1.48493 * 109.47430 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46963 * 120.00154 * 3 2 1 7 7 C 1.37873 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00071 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47568 * 179.97438 * 9 7 2 11 11 C 1.46490 * 119.99884 * 270.00274 * 10 9 7 12 12 C 1.50703 * 109.47191 * 274.89252 * 11 10 9 13 13 C 1.34512 * 125.78623 * 85.04561 * 12 11 10 14 14 C 1.41376 * 106.84325 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.84119 * 0.02562 * 14 13 12 16 16 O 1.34299 * 125.79271 * 264.74397 * 12 11 10 17 17 C 1.34781 * 119.99634 * 89.99469 * 10 9 7 18 18 O 1.21282 * 119.99750 * 185.12169 * 17 10 9 19 19 C 1.50696 * 120.00248 * 5.13072 * 17 10 9 20 20 H 1.08999 * 110.67219 * 53.23615 * 19 17 10 21 21 C 1.54712 * 110.74757 * 290.01655 * 19 17 10 22 22 C 1.51649 * 101.94187 * 216.26214 * 21 19 17 23 23 C 1.37743 * 132.14874 * 195.61369 * 22 21 19 24 24 C 1.38444 * 119.96765 * 179.10749 * 23 22 21 25 25 Cl 1.73605 * 120.13130 * 179.97438 * 24 23 22 26 26 C 1.38387 * 119.74078 * 359.97438 * 24 23 22 27 27 C 1.37926 * 120.33634 * 0.19490 * 26 24 23 28 28 C 1.38871 * 107.05342 * 15.14787 * 22 21 19 29 29 O 1.36163 * 111.21213 * 1.42836 * 28 22 21 30 30 H 0.96998 * 119.99861 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47586 * 60.00057 * 9 7 2 32 32 H 1.09002 * 109.47365 * 299.99991 * 9 7 2 33 33 H 1.08998 * 109.47669 * 34.89929 * 11 10 9 34 34 H 1.09003 * 109.47185 * 154.89652 * 11 10 9 35 35 H 1.08006 * 126.57862 * 0.03686 * 13 12 11 36 36 H 1.08001 * 126.58715 * 180.02562 * 14 13 12 37 37 H 1.07996 * 125.79347 * 180.02562 * 15 14 13 38 38 H 1.08996 * 110.93732 * 98.10121 * 21 19 17 39 39 H 1.09003 * 110.93567 * 334.42089 * 21 19 17 40 40 H 1.08005 * 120.01758 * 359.08465 * 23 22 21 41 41 H 1.08007 * 119.83200 * 180.18776 * 26 24 23 42 42 H 1.08005 * 119.87332 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6780 -4.1688 -1.2710 12 6 1.6965 -5.1996 -1.7665 13 6 0.5908 -4.9489 -2.4902 14 6 -0.0307 -6.1952 -2.7336 15 6 0.7321 -7.1330 -2.1436 16 8 1.7806 -6.5248 -1.5652 17 6 2.6418 -4.1254 1.1649 18 8 3.4988 -4.9836 1.1660 19 6 2.0676 -3.6324 2.4681 20 1 0.9797 -3.6999 2.4592 21 6 2.5244 -2.1823 2.7546 22 6 2.6994 -2.2002 4.2608 23 6 2.8168 -1.1901 5.1899 24 6 2.9514 -1.4980 6.5329 25 17 3.1003 -0.2282 7.7074 26 6 2.9668 -2.8219 6.9356 27 6 2.8529 -3.8342 6.0057 28 6 2.7219 -3.5324 4.6523 29 8 2.6143 -4.3633 3.5789 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.7681 -3.3698 -2.0069 34 1 3.6512 -4.6363 -1.1214 35 1 0.2443 -3.9812 -2.8218 36 1 -0.9430 -6.3624 -3.2871 37 1 0.5378 -8.1953 -2.1408 38 1 1.7566 -1.4667 2.4603 39 1 3.4688 -1.9656 2.2553 40 1 2.8042 -0.1583 4.8707 41 1 3.0687 -3.0637 7.9833 42 1 2.8662 -4.8649 6.3282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069433085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:14 Heat of formation + Delta-G solvation = -34.812475 kcal Electronic energy + Delta-G solvation = -29864.531882 eV Core-core repulsion = 25609.555030 eV Total energy + Delta-G solvation = -4254.976851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.091 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.48185 -42.54414 -40.56643 -38.72399 -37.20939 -37.02832 -34.75419 -33.99743 -33.77961 -32.11080 -30.94942 -30.41400 -29.23772 -27.21211 -25.33686 -24.73264 -23.40575 -22.80775 -22.61898 -21.64587 -20.46359 -19.04864 -18.62846 -18.15982 -18.05809 -18.02191 -17.51247 -17.25142 -16.60606 -16.43408 -16.09500 -15.61260 -15.31607 -15.13295 -14.74337 -14.52706 -14.36580 -14.25208 -14.08737 -13.91415 -13.71671 -13.57985 -13.51417 -13.38789 -13.18521 -12.99293 -12.70907 -12.60463 -12.52939 -12.34640 -12.09533 -11.84763 -11.73532 -11.63880 -10.98633 -10.82045 -10.54825 -10.04525 -9.77478 -9.43477 -9.16277 -8.18727 -6.30365 0.04251 0.15672 0.68148 1.08469 1.36342 1.44855 1.48828 1.52436 1.58607 1.80634 2.15663 2.40389 2.42882 2.63520 3.12400 3.23138 3.43148 3.63173 3.74948 3.80349 3.89887 4.04447 4.11443 4.16176 4.19100 4.35485 4.43275 4.55408 4.68190 4.76242 4.82211 4.86812 4.92234 5.00690 5.03566 5.13422 5.17750 5.19525 5.27648 5.36114 5.55969 5.62722 5.74916 5.94680 6.03209 6.20723 6.36407 6.76846 7.03678 7.39723 8.87140 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.003506 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.203579 B = 7984.693991 C =10432.072700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.036 3.964 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.248 3.752 10 N -0.583 5.583 11 C 0.195 3.805 12 C -0.049 4.049 13 C -0.198 4.198 14 C -0.224 4.224 15 C -0.041 4.041 16 O -0.194 6.194 17 C 0.522 3.478 18 O -0.572 6.572 19 C 0.076 3.924 20 H 0.117 0.883 21 C -0.074 4.074 22 C -0.168 4.168 23 C -0.067 4.067 24 C -0.066 4.066 25 Cl -0.059 7.059 26 C -0.066 4.066 27 C -0.122 4.122 28 C 0.087 3.913 29 O -0.296 6.296 30 H 0.267 0.733 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.239 0.761 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.140 0.860 41 H 0.175 0.825 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 -5.957 6.634 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.128 3.872 10 N -0.314 5.314 11 C 0.073 3.927 12 C -0.100 4.100 13 C -0.218 4.218 14 C -0.243 4.243 15 C -0.109 4.109 16 O -0.091 6.091 17 C 0.310 3.690 18 O -0.452 6.452 19 C 0.017 3.983 20 H 0.134 0.866 21 C -0.112 4.112 22 C -0.169 4.169 23 C -0.085 4.085 24 C -0.093 4.093 25 Cl -0.031 7.031 26 C -0.084 4.084 27 C -0.140 4.140 28 C 0.042 3.958 29 O -0.210 6.210 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.168 0.832 36 H 0.191 0.809 37 H 0.256 0.744 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.158 0.842 41 H 0.192 0.808 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.342 -6.519 6.854 9.554 hybrid contribution -0.071 1.372 -0.580 1.492 sum 1.271 -5.147 6.274 8.214 Atomic orbital electron populations 1.69981 1.06996 1.28166 1.50005 1.25398 0.95235 1.01393 0.94487 0.85883 0.78649 0.79855 0.79063 1.20002 1.21258 1.19365 1.21481 0.93380 0.90632 1.52005 0.92284 1.19317 0.87297 0.82284 0.98280 1.48136 1.45423 1.34015 1.03819 1.19744 0.94378 0.92653 0.85952 1.22976 1.01206 0.82070 1.03729 1.21898 0.96135 1.00490 1.03285 1.22170 1.03812 0.91723 1.06605 1.24881 0.86954 1.00594 0.98444 1.84068 1.43596 1.19768 1.61647 1.20174 0.81889 0.81263 0.85682 1.90636 1.32953 1.33871 1.87731 1.23067 0.99060 0.91562 0.84638 0.86567 1.21649 1.04124 0.94752 0.90634 1.20874 1.06519 0.93745 0.95755 1.20253 0.98247 0.99575 0.90446 1.20724 1.08522 0.90340 0.89720 1.98358 1.96464 1.51112 1.57125 1.21050 0.97202 0.88910 1.01270 1.20476 1.04664 1.01896 0.86976 1.20079 0.97324 0.88764 0.89682 1.86869 1.79501 1.35893 1.18708 0.92329 0.94933 0.95121 0.85774 0.89363 0.83187 0.80910 0.74446 0.86806 0.89823 0.84217 0.80755 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.91 13.29 21.45 0.28 -45.62 16 2 C 0.04 1.72 5.46 84.65 0.46 2.19 16 3 Si 0.94 38.55 29.54 68.60 2.03 40.57 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.54 -24.57 6.80 25.60 0.17 -24.40 16 8 H 0.06 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.25 10.69 4.72 85.63 0.40 11.10 16 10 N -0.58 -23.46 2.44 -830.51 -2.03 -25.49 16 11 C 0.20 7.07 6.03 85.64 0.52 7.58 16 12 C -0.05 -1.71 6.90 24.83 0.17 -1.54 16 13 C -0.20 -6.28 10.71 22.19 0.24 -6.04 16 14 C -0.22 -5.86 10.91 22.19 0.24 -5.61 16 15 C -0.04 -1.06 12.09 66.97 0.81 -0.25 16 16 O -0.19 -6.66 10.65 -2.50 -0.03 -6.69 16 17 C 0.52 22.17 7.02 87.66 0.62 22.78 16 18 O -0.57 -27.18 16.07 15.07 0.24 -26.94 16 19 C 0.08 2.92 3.06 30.43 0.09 3.01 16 20 H 0.12 4.26 7.27 -2.39 -0.02 4.24 16 21 C -0.07 -2.77 4.71 30.73 0.14 -2.63 16 22 C -0.17 -5.58 6.27 -19.53 -0.12 -5.70 16 23 C -0.07 -1.92 9.82 22.20 0.22 -1.70 16 24 C -0.07 -1.62 6.33 22.35 0.14 -1.48 16 25 Cl -0.06 -1.28 28.97 -2.72 -0.08 -1.36 16 26 C -0.07 -1.40 9.81 22.23 0.22 -1.18 16 27 C -0.12 -3.01 10.06 22.45 0.23 -2.79 16 28 C 0.09 2.85 7.03 22.67 0.16 3.01 16 29 O -0.30 -11.41 10.41 -77.30 -0.80 -12.22 16 30 H 0.27 13.02 8.31 -92.71 -0.77 12.24 16 31 H 0.03 1.48 7.97 -2.39 -0.02 1.46 16 32 H 0.03 1.38 5.83 -2.39 -0.01 1.36 16 33 H 0.12 4.12 8.11 -2.39 -0.02 4.10 16 34 H 0.09 3.26 7.22 -2.39 -0.02 3.25 16 35 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 36 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.24 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.11 4.54 6.50 -2.39 -0.02 4.52 16 39 H 0.08 3.31 7.81 -2.39 -0.02 3.29 16 40 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 41 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 42 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -60.25 375.58 5.39 -54.86 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 1.07 Total: 26.52 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 4.71 Total: -3.64 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.74 Total: -71.11 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.59 Total: -45.84 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -60.25 5.39 -54.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069433085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.044 kcal (2) G-P(sol) polarization free energy of solvation -60.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds