Wall clock time and date at job start Tue Mar 31 2020 05:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48498 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47086 * 299.99898 * 3 2 1 6 6 H 1.48496 * 109.47484 * 59.99923 * 3 2 1 7 7 C 1.37871 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00162 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00158 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99912 * 89.99716 * 10 9 7 12 12 C 1.50699 * 109.47127 * 270.69523 * 11 10 9 13 13 C 1.34520 * 125.78975 * 95.36721 * 12 11 10 14 14 C 1.41382 * 106.84069 * 180.29936 * 13 12 11 15 15 C 1.34517 * 106.83893 * 359.57065 * 14 13 12 16 16 O 1.34301 * 108.42203 * 0.42870 * 15 14 13 17 17 C 1.34774 * 120.00000 * 269.99558 * 10 9 7 18 18 O 1.21280 * 119.99709 * 4.78208 * 17 10 9 19 19 C 1.50698 * 119.99885 * 184.78105 * 17 10 9 20 20 H 1.08996 * 110.66688 * 310.18333 * 19 17 10 21 21 C 1.54697 * 110.75051 * 73.60486 * 19 17 10 22 22 C 1.51649 * 101.93295 * 93.03838 * 21 19 17 23 23 C 1.37738 * 132.15412 * 195.89163 * 22 21 19 24 24 C 1.38454 * 119.96810 * 179.03682 * 23 22 21 25 25 Cl 1.73596 * 120.13103 * 180.02562 * 24 23 22 26 26 C 1.38388 * 119.73527 * 359.97438 * 24 23 22 27 27 C 1.37923 * 120.34115 * 0.17795 * 26 24 23 28 28 C 1.38880 * 107.04132 * 15.37258 * 22 21 19 29 29 O 1.36155 * 111.22878 * 1.08980 * 28 22 21 30 30 H 0.97000 * 120.00125 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.47293 * 59.99316 * 9 7 2 32 32 H 1.09001 * 109.46643 * 299.99444 * 9 7 2 33 33 H 1.09001 * 109.46996 * 150.69972 * 11 10 9 34 34 H 1.08996 * 109.47298 * 30.69450 * 11 10 9 35 35 H 1.08002 * 126.57838 * 0.03123 * 13 12 11 36 36 H 1.07996 * 126.57816 * 179.73201 * 14 13 12 37 37 H 1.08006 * 125.78479 * 180.11954 * 15 14 13 38 38 H 1.09002 * 110.93669 * 211.19483 * 21 19 17 39 39 H 1.08998 * 110.93959 * 334.87705 * 21 19 17 40 40 H 1.07995 * 120.01779 * 359.01911 * 23 22 21 41 41 H 1.07999 * 119.82735 * 180.21162 * 26 24 23 42 42 H 1.07998 * 119.87357 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6792 -4.1693 1.2692 12 6 3.9125 -3.4256 1.7128 13 6 3.9406 -2.3898 2.5707 14 6 5.2933 -1.9978 2.6954 15 6 6.0120 -2.8236 1.9137 16 8 5.1700 -3.6840 1.3182 17 6 2.6410 -4.1249 -1.1666 18 8 2.3154 -3.6095 -2.2151 19 6 3.5351 -5.3379 -1.1689 20 1 4.3685 -5.2028 -0.4796 21 6 2.7307 -6.6123 -0.8194 22 6 2.3430 -7.1249 -2.1930 23 6 1.4028 -8.0430 -2.6056 24 6 1.2446 -8.3124 -3.9545 25 17 0.0604 -9.4682 -4.4792 26 6 2.0335 -7.6557 -4.8827 27 6 2.9774 -6.7385 -4.4704 28 6 3.1462 -6.4661 -3.1149 29 8 4.0120 -5.6167 -2.4963 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8895 32 1 0.6242 -2.5567 0.8904 33 1 2.9194 -5.2241 1.1358 34 1 1.9013 -4.0666 2.0258 35 1 3.0922 -1.9407 3.0655 36 1 5.6763 -1.1919 3.3037 37 1 7.0837 -2.7959 1.7829 38 1 3.3555 -7.3359 -0.2958 39 1 1.8464 -6.3659 -0.2318 40 1 0.7895 -8.5527 -1.8774 41 1 1.9090 -7.8622 -5.9354 42 1 3.5887 -6.2302 -5.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069433087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:18 Heat of formation + Delta-G solvation = -16.954302 kcal Electronic energy + Delta-G solvation = -30128.747045 eV Core-core repulsion = 25874.544582 eV Total energy + Delta-G solvation = -4254.202463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.091 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22153 -41.49339 -38.90683 -37.61300 -36.22215 -35.35080 -33.11681 -32.67003 -32.49714 -30.15692 -30.00365 -29.78406 -27.39222 -25.60483 -24.49375 -22.84247 -22.22212 -21.89059 -21.38544 -20.41887 -19.19361 -17.70477 -17.26504 -16.99902 -16.84807 -16.42420 -16.18405 -15.53285 -15.35143 -14.83420 -14.57302 -14.36127 -14.18855 -13.82536 -13.67913 -13.29250 -13.17883 -13.02378 -12.67331 -12.51357 -12.40968 -12.36928 -12.23650 -12.19163 -11.77978 -11.46643 -11.43891 -11.29588 -10.98200 -10.94460 -10.80039 -10.68449 -10.23885 -9.73025 -9.48421 -9.20176 -9.07107 -8.47449 -8.22000 -8.06773 -7.88842 -6.07633 -4.10250 1.03683 1.12547 2.00127 2.02200 2.83554 3.04385 3.14198 3.27717 3.35721 3.36509 3.41416 3.55749 3.73776 4.21715 4.41174 4.43231 4.67059 4.70119 4.93954 4.97796 5.02129 5.12445 5.16599 5.28211 5.38632 5.42343 5.45598 5.50409 5.53976 5.65260 5.74728 5.88646 6.06388 6.14857 6.21168 6.30348 6.34162 6.41133 6.80985 6.87901 7.01717 7.26459 7.35650 7.48198 7.89201 8.10223 8.17675 8.72983 8.95385 9.54447 11.00994 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.003106 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.639094 B = 9012.938941 C =10313.891650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.247 3.753 10 N -0.590 5.590 11 C 0.190 3.810 12 C -0.032 4.032 13 C -0.168 4.168 14 C -0.213 4.213 15 C -0.049 4.049 16 O -0.182 6.182 17 C 0.495 3.505 18 O -0.508 6.508 19 C 0.059 3.941 20 H 0.140 0.860 21 C -0.098 4.098 22 C -0.163 4.163 23 C -0.057 4.057 24 C -0.068 4.068 25 Cl -0.073 7.073 26 C -0.073 4.073 27 C -0.123 4.123 28 C 0.129 3.871 29 O -0.271 6.271 30 H 0.262 0.738 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.196 0.804 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -17.388 1.378 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.128 3.872 10 N -0.323 5.323 11 C 0.066 3.934 12 C -0.083 4.083 13 C -0.188 4.188 14 C -0.232 4.232 15 C -0.117 4.117 16 O -0.079 6.079 17 C 0.280 3.720 18 O -0.383 6.383 19 C 0.000 4.000 20 H 0.157 0.843 21 C -0.135 4.135 22 C -0.164 4.164 23 C -0.076 4.076 24 C -0.095 4.095 25 Cl -0.044 7.044 26 C -0.092 4.092 27 C -0.142 4.142 28 C 0.083 3.917 29 O -0.183 6.183 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.213 0.787 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.642 -17.196 0.458 18.440 hybrid contribution 0.414 1.436 0.316 1.527 sum 7.055 -15.760 0.775 17.285 Atomic orbital electron populations 1.69929 1.05913 1.26872 1.50825 1.24879 0.94792 0.99079 0.95181 0.86504 0.80203 0.83619 0.77552 1.19779 1.20963 1.20993 1.21397 0.93437 0.90236 1.50394 0.92249 1.19414 0.86947 0.82193 0.98617 1.48341 1.45120 1.35845 1.03017 1.19962 0.89969 0.95095 0.88369 1.22890 0.83972 1.01591 0.99859 1.21580 0.97484 0.97502 1.02271 1.21815 0.93942 1.02795 1.04661 1.23856 0.95722 0.93416 0.98674 1.83916 1.16520 1.50076 1.57381 1.20449 0.81640 0.85063 0.84895 1.90733 1.55978 1.60655 1.30893 1.23555 0.98642 0.94299 0.83545 0.84291 1.21811 1.01323 0.95384 0.95016 1.20590 1.00105 1.00444 0.95272 1.20035 0.96803 0.96698 0.94043 1.20551 0.96818 0.98374 0.93766 1.98353 1.56882 1.58437 1.90714 1.20716 0.93986 0.94901 0.99598 1.20185 1.00829 1.00868 0.92302 1.19652 0.89437 0.89321 0.93266 1.86946 1.42280 1.61869 1.27226 0.92819 0.93711 0.94569 0.90076 0.86939 0.83278 0.83955 0.78708 0.87711 0.87979 0.84684 0.84175 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.11 9.38 -34.44 -0.32 -14.44 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 6.07 5.17 -5.19 -0.03 6.05 16 10 N -0.59 -11.63 2.44 -176.44 -0.43 -12.06 16 11 C 0.19 2.79 5.52 -5.20 -0.03 2.76 16 12 C -0.03 -0.52 6.83 -35.62 -0.24 -0.76 16 13 C -0.17 -2.79 10.81 -39.70 -0.43 -3.22 16 14 C -0.21 -3.16 10.91 -39.70 -0.43 -3.60 16 15 C -0.05 -0.67 12.09 29.42 0.36 -0.32 16 16 O -0.18 -2.82 9.70 5.71 0.06 -2.77 16 17 C 0.49 10.13 6.88 -10.99 -0.08 10.05 16 18 O -0.51 -12.98 16.04 -13.40 -0.21 -13.20 16 19 C 0.06 0.92 3.09 -26.99 -0.08 0.84 16 20 H 0.14 1.92 6.58 -51.93 -0.34 1.58 16 21 C -0.10 -1.16 5.50 -26.52 -0.15 -1.30 16 22 C -0.16 -2.21 6.26 -104.10 -0.65 -2.86 16 23 C -0.06 -0.69 9.82 -39.68 -0.39 -1.08 16 24 C -0.07 -0.82 6.33 -39.45 -0.25 -1.07 16 25 Cl -0.07 -0.77 28.97 -51.86 -1.50 -2.28 16 26 C -0.07 -0.86 9.81 -39.64 -0.39 -1.25 16 27 C -0.12 -1.65 10.06 -39.31 -0.40 -2.05 16 28 C 0.13 2.00 6.77 -38.96 -0.26 1.73 16 29 O -0.27 -4.64 10.45 -39.19 -0.41 -5.05 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.04 1.27 7.49 -51.93 -0.39 0.88 16 32 H 0.04 0.88 7.90 -51.93 -0.41 0.47 16 33 H 0.08 0.88 5.21 -51.93 -0.27 0.61 16 34 H 0.11 1.45 7.90 -51.93 -0.41 1.04 16 35 H 0.15 2.46 8.06 -52.49 -0.42 2.04 16 36 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.20 1.88 8.06 -52.48 -0.42 1.45 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.12 7.27 -51.93 -0.38 0.74 16 40 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -34.66 377.39 -9.67 -44.33 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.70 Total: 2.54 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.87 Total: -8.85 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.31 Total: -37.32 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.57 Total: -21.01 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.66 -9.67 -44.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069433087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.379 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds