Wall clock time and date at job start Tue Mar 31 2020 05:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48498 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47086 * 299.99898 * 3 2 1 6 6 H 1.48496 * 109.47484 * 59.99923 * 3 2 1 7 7 C 1.37871 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00162 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00158 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99912 * 89.99716 * 10 9 7 12 12 C 1.50699 * 109.47127 * 270.69523 * 11 10 9 13 13 C 1.34520 * 125.78975 * 95.36721 * 12 11 10 14 14 C 1.41382 * 106.84069 * 180.29936 * 13 12 11 15 15 C 1.34517 * 106.83893 * 359.57065 * 14 13 12 16 16 O 1.34301 * 108.42203 * 0.42870 * 15 14 13 17 17 C 1.34774 * 120.00000 * 269.99558 * 10 9 7 18 18 O 1.21280 * 119.99709 * 4.78208 * 17 10 9 19 19 C 1.50698 * 119.99885 * 184.78105 * 17 10 9 20 20 H 1.08996 * 110.66688 * 310.18333 * 19 17 10 21 21 C 1.54697 * 110.75051 * 73.60486 * 19 17 10 22 22 C 1.51649 * 101.93295 * 93.03838 * 21 19 17 23 23 C 1.37738 * 132.15412 * 195.89163 * 22 21 19 24 24 C 1.38454 * 119.96810 * 179.03682 * 23 22 21 25 25 Cl 1.73596 * 120.13103 * 180.02562 * 24 23 22 26 26 C 1.38388 * 119.73527 * 359.97438 * 24 23 22 27 27 C 1.37923 * 120.34115 * 0.17795 * 26 24 23 28 28 C 1.38880 * 107.04132 * 15.37258 * 22 21 19 29 29 O 1.36155 * 111.22878 * 1.08980 * 28 22 21 30 30 H 0.97000 * 120.00125 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.47293 * 59.99316 * 9 7 2 32 32 H 1.09001 * 109.46643 * 299.99444 * 9 7 2 33 33 H 1.09001 * 109.46996 * 150.69972 * 11 10 9 34 34 H 1.08996 * 109.47298 * 30.69450 * 11 10 9 35 35 H 1.08002 * 126.57838 * 0.03123 * 13 12 11 36 36 H 1.07996 * 126.57816 * 179.73201 * 14 13 12 37 37 H 1.08006 * 125.78479 * 180.11954 * 15 14 13 38 38 H 1.09002 * 110.93669 * 211.19483 * 21 19 17 39 39 H 1.08998 * 110.93959 * 334.87705 * 21 19 17 40 40 H 1.07995 * 120.01779 * 359.01911 * 23 22 21 41 41 H 1.07999 * 119.82735 * 180.21162 * 26 24 23 42 42 H 1.07998 * 119.87357 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6792 -4.1693 1.2692 12 6 3.9125 -3.4256 1.7128 13 6 3.9406 -2.3898 2.5707 14 6 5.2933 -1.9978 2.6954 15 6 6.0120 -2.8236 1.9137 16 8 5.1700 -3.6840 1.3182 17 6 2.6410 -4.1249 -1.1666 18 8 2.3154 -3.6095 -2.2151 19 6 3.5351 -5.3379 -1.1689 20 1 4.3685 -5.2028 -0.4796 21 6 2.7307 -6.6123 -0.8194 22 6 2.3430 -7.1249 -2.1930 23 6 1.4028 -8.0430 -2.6056 24 6 1.2446 -8.3124 -3.9545 25 17 0.0604 -9.4682 -4.4792 26 6 2.0335 -7.6557 -4.8827 27 6 2.9774 -6.7385 -4.4704 28 6 3.1462 -6.4661 -3.1149 29 8 4.0120 -5.6167 -2.4963 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8895 32 1 0.6242 -2.5567 0.8904 33 1 2.9194 -5.2241 1.1358 34 1 1.9013 -4.0666 2.0258 35 1 3.0922 -1.9407 3.0655 36 1 5.6763 -1.1919 3.3037 37 1 7.0837 -2.7959 1.7829 38 1 3.3555 -7.3359 -0.2958 39 1 1.8464 -6.3659 -0.2318 40 1 0.7895 -8.5527 -1.8774 41 1 1.9090 -7.8622 -5.9354 42 1 3.5887 -6.2302 -5.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069433087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:17 Heat of formation + Delta-G solvation = -36.459962 kcal Electronic energy + Delta-G solvation = -30129.592874 eV Core-core repulsion = 25874.544582 eV Total energy + Delta-G solvation = -4255.048292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.091 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.38652 -42.62955 -40.34256 -38.70051 -37.18219 -36.95339 -34.93058 -33.92901 -33.71652 -31.57184 -31.05144 -30.90112 -29.11913 -26.86136 -25.98335 -24.33099 -23.44045 -22.88085 -22.56098 -21.65578 -20.58417 -19.00103 -18.72894 -18.33405 -18.16124 -17.82276 -17.25831 -16.92301 -16.79552 -16.39321 -15.89259 -15.84589 -15.28984 -15.01871 -14.85977 -14.49895 -14.31847 -14.22870 -14.10268 -13.81630 -13.66975 -13.51634 -13.49070 -13.32951 -13.31604 -12.97956 -12.89384 -12.67405 -12.55272 -12.34409 -12.27717 -11.99393 -11.75620 -11.72525 -10.71973 -10.70150 -10.62887 -10.03930 -9.76227 -9.27316 -9.13791 -8.22582 -6.31910 0.03905 0.16255 0.81574 1.09054 1.31119 1.34382 1.43986 1.49285 1.78296 1.97884 2.20824 2.29906 2.42530 2.54670 3.08895 3.21491 3.31280 3.43580 3.74503 3.83905 4.02391 4.06413 4.08441 4.16388 4.25361 4.43948 4.45368 4.50263 4.58725 4.62086 4.78155 4.92658 4.96185 5.01497 5.12059 5.14008 5.19953 5.22613 5.30675 5.34601 5.49850 5.69949 5.77254 5.93955 6.06840 6.28854 6.50654 6.74848 7.17177 7.38005 8.85291 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.003106 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.639094 B = 9012.938941 C =10313.891650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.045 0.955 9 C 0.262 3.738 10 N -0.589 5.589 11 C 0.185 3.815 12 C -0.046 4.046 13 C -0.190 4.190 14 C -0.235 4.235 15 C -0.039 4.039 16 O -0.188 6.188 17 C 0.486 3.514 18 O -0.574 6.574 19 C 0.067 3.933 20 H 0.160 0.840 21 C -0.089 4.089 22 C -0.168 4.168 23 C -0.060 4.060 24 C -0.072 4.072 25 Cl -0.059 7.059 26 C -0.073 4.073 27 C -0.136 4.136 28 C 0.089 3.911 29 O -0.295 6.295 30 H 0.265 0.735 31 H -0.001 1.001 32 H 0.039 0.961 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.237 0.763 38 H 0.150 0.850 39 H 0.113 0.887 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.054 -19.135 2.469 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.557 4.557 8 H 0.063 0.937 9 C 0.141 3.859 10 N -0.320 5.320 11 C 0.063 3.937 12 C -0.097 4.097 13 C -0.211 4.211 14 C -0.254 4.254 15 C -0.106 4.106 16 O -0.084 6.084 17 C 0.274 3.726 18 O -0.453 6.453 19 C 0.008 3.992 20 H 0.177 0.823 21 C -0.126 4.126 22 C -0.169 4.169 23 C -0.079 4.079 24 C -0.098 4.098 25 Cl -0.030 7.030 26 C -0.092 4.092 27 C -0.155 4.155 28 C 0.044 3.956 29 O -0.207 6.207 30 H 0.074 0.926 31 H 0.017 0.983 32 H 0.057 0.943 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.253 0.747 38 H 0.168 0.832 39 H 0.131 0.869 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.880 -18.980 1.594 20.613 hybrid contribution 0.026 1.939 -0.069 1.940 sum 7.906 -17.041 1.526 18.848 Atomic orbital electron populations 1.70020 1.07094 1.27738 1.51755 1.25621 0.95592 1.02227 0.95041 0.85607 0.78787 0.80016 0.77895 1.19887 1.21172 1.19298 1.21530 0.92731 0.91650 1.49794 0.93699 1.18875 0.87363 0.83274 0.96342 1.48244 1.44167 1.34494 1.05135 1.20371 0.90024 0.97034 0.86316 1.22970 0.84613 1.01959 1.00156 1.21765 0.98302 0.98048 1.02941 1.22126 0.93399 1.04004 1.05829 1.24679 0.97184 0.91858 0.96898 1.83916 1.16436 1.50540 1.57528 1.21491 0.81253 0.86015 0.83862 1.90688 1.58552 1.62913 1.33162 1.23571 0.98550 0.93288 0.83802 0.82300 1.21950 1.01941 0.94061 0.94625 1.20846 0.99896 1.00406 0.95795 1.20324 0.96497 0.96386 0.94669 1.20755 0.96770 0.98275 0.94031 1.98359 1.56247 1.57799 1.90602 1.20985 0.93165 0.94108 1.00912 1.20458 1.01463 1.01415 0.92126 1.20050 0.90745 0.90371 0.94435 1.86907 1.43099 1.62671 1.28060 0.92594 0.98284 0.94350 0.85609 0.85341 0.84214 0.82264 0.74669 0.83247 0.86867 0.82283 0.81831 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.01 0.80 5.46 84.65 0.46 1.26 16 3 Si 0.95 45.53 29.54 68.60 2.03 47.55 16 4 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.52 -29.13 9.38 25.60 0.24 -28.89 16 8 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 9 C 0.26 13.38 5.17 85.63 0.44 13.83 16 10 N -0.59 -23.38 2.44 -830.53 -2.03 -25.41 16 11 C 0.18 5.13 5.52 85.63 0.47 5.60 16 12 C -0.05 -1.43 6.83 24.83 0.17 -1.26 16 13 C -0.19 -6.20 10.81 22.19 0.24 -5.96 16 14 C -0.23 -6.61 10.91 22.19 0.24 -6.37 16 15 C -0.04 -0.97 12.09 66.97 0.81 -0.16 16 16 O -0.19 -5.40 9.70 -2.47 -0.02 -5.43 16 17 C 0.49 20.21 6.88 87.66 0.60 20.81 16 18 O -0.57 -30.79 16.04 15.09 0.24 -30.55 16 19 C 0.07 2.01 3.09 30.43 0.09 2.11 16 20 H 0.16 4.03 6.58 -2.39 -0.02 4.01 16 21 C -0.09 -1.85 5.50 30.73 0.17 -1.68 16 22 C -0.17 -4.29 6.26 -19.53 -0.12 -4.41 16 23 C -0.06 -1.33 9.82 22.20 0.22 -1.12 16 24 C -0.07 -1.59 6.33 22.36 0.14 -1.45 16 25 Cl -0.06 -1.14 28.97 -2.72 -0.08 -1.22 16 26 C -0.07 -1.64 9.81 22.23 0.22 -1.42 16 27 C -0.14 -3.66 10.06 22.45 0.23 -3.43 16 28 C 0.09 2.74 6.77 22.68 0.15 2.90 16 29 O -0.29 -10.09 10.45 -77.19 -0.81 -10.90 16 30 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.00 -0.06 7.49 -2.39 -0.02 -0.07 16 32 H 0.04 1.92 7.90 -2.39 -0.02 1.90 16 33 H 0.13 2.33 5.21 -2.39 -0.01 2.32 16 34 H 0.13 3.12 7.90 -2.39 -0.02 3.10 16 35 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.24 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 2.12 7.27 -2.39 -0.02 2.10 16 40 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 42 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -79.71 377.39 5.46 -74.25 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.07 Total: 15.97 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 4.78 Total: -9.65 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.74 Total: -80.02 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.59 Total: -46.87 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -79.71 5.46 -74.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069433087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.788 kcal (2) G-P(sol) polarization free energy of solvation -79.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds