Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39877 * 126.03855 * 2 1 4 4 N 1.30835 * 108.20256 * 179.73960 * 3 2 1 5 5 N 1.40093 * 108.20326 * 0.40041 * 4 3 2 6 6 C 1.46501 * 126.03224 * 179.85868 * 5 4 3 7 7 C 1.52999 * 109.47096 * 304.68473 * 6 5 4 8 8 H 1.08996 * 109.50951 * 305.08954 * 7 6 5 9 9 C 1.53101 * 109.50401 * 185.00443 * 7 6 5 10 10 N 1.47016 * 109.25537 * 183.17710 * 9 7 6 11 11 C 1.46899 * 111.00006 * 182.39265 * 10 9 7 12 12 C 1.53002 * 109.47033 * 302.41184 * 11 10 9 13 13 C 1.50706 * 109.46893 * 180.02562 * 12 11 10 14 14 O 1.21287 * 119.99962 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99605 * 179.97438 * 13 12 11 16 16 C 1.37089 * 119.99830 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00248 * 20.21226 * 16 15 13 18 18 C 1.38947 * 120.00348 * 200.21897 * 16 15 13 19 19 N 1.31411 * 119.99863 * 21.41553 * 18 16 15 20 20 Si 1.86793 * 120.00363 * 201.42666 * 18 16 15 21 21 H 1.48498 * 109.47391 * 59.99297 * 20 18 16 22 22 H 1.48504 * 109.47576 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47119 * 299.99569 * 20 18 16 24 24 C 1.46495 * 120.00164 * 359.97438 * 15 13 12 25 25 C 1.47200 * 109.47264 * 83.95160 * 24 15 13 26 26 N 9.57830 * 147.39819 * 152.45988 * 2 1 3 27 27 C 1.47015 * 110.75704 * 58.61326 * 10 9 7 28 28 C 1.53098 * 109.25512 * 301.38805 * 27 10 9 29 29 O 1.43014 * 109.29830 * 56.82738 * 28 27 10 30 30 C 1.34943 * 107.92569 * 359.59124 * 5 4 3 31 31 H 1.08998 * 109.47613 * 270.00646 * 1 2 3 32 32 H 1.09001 * 109.47319 * 30.00218 * 1 2 3 33 33 H 1.09005 * 109.47120 * 150.00241 * 1 2 3 34 34 H 1.07996 * 125.89703 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.46457 * 184.68857 * 6 5 4 36 36 H 1.09001 * 109.47506 * 64.68861 * 6 5 4 37 37 H 1.08997 * 109.50631 * 63.24339 * 9 7 6 38 38 H 1.09000 * 109.54226 * 303.12646 * 9 7 6 39 39 H 1.09005 * 109.46990 * 62.40781 * 11 10 9 40 40 H 1.08997 * 109.47085 * 182.40551 * 11 10 9 41 41 H 1.09005 * 109.46903 * 299.99650 * 12 11 10 42 42 H 1.08993 * 109.47224 * 59.99716 * 12 11 10 43 43 H 0.97003 * 120.00173 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.47359 * 203.95781 * 24 15 13 45 45 H 1.09009 * 109.47156 * 323.95334 * 24 15 13 46 46 H 1.08992 * 109.50649 * 181.44648 * 27 10 9 47 47 H 1.09006 * 109.53566 * 61.34215 * 27 10 9 48 48 H 1.09005 * 109.50167 * 176.78114 * 28 27 10 49 49 H 1.08994 * 109.50376 * 296.86302 * 28 27 10 50 50 H 1.08004 * 126.12889 * 180.26162 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5753 0.7303 0.0056 5 7 3.5844 -0.6705 0.0001 6 6 4.7746 -1.5247 0.0007 7 6 5.6715 -1.1504 -1.1810 8 1 5.0969 -1.2048 -2.1056 9 6 6.8520 -2.1226 -1.2547 10 7 7.7501 -1.7128 -2.3441 11 6 8.8690 -2.6540 -2.4860 12 6 9.6320 -2.7424 -1.1628 13 6 10.7803 -3.7075 -1.3086 14 8 10.9695 -4.2696 -2.3666 15 7 11.5970 -3.9459 -0.2632 16 6 12.6419 -4.8234 -0.3960 17 1 13.0172 -5.0717 -1.3778 18 6 13.2180 -5.3936 0.7325 19 7 12.5432 -5.4474 1.8588 20 14 14.9520 -6.0832 0.6489 21 1 15.8971 -5.0020 0.2709 22 1 15.3317 -6.6304 1.9762 23 1 15.0059 -7.1653 -0.3668 24 6 11.3688 -3.2666 1.0144 25 6 10.3579 -4.0047 1.7890 26 7 9.5761 -4.5760 2.3862 27 6 8.2381 -0.3427 -2.1296 28 6 7.0437 0.6115 -2.0470 29 8 6.1654 0.1801 -1.0040 30 6 2.3031 -1.0941 0.0002 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8900 -0.5139 33 1 -0.3634 -0.8900 -0.5138 34 1 1.9950 2.1578 -0.0004 35 1 4.4728 -2.5683 -0.0884 36 1 5.3229 -1.3833 0.9321 37 1 6.4825 -3.1298 -1.4470 38 1 7.3956 -2.1083 -0.3101 39 1 8.4840 -3.6390 -2.7500 40 1 9.5406 -2.3044 -3.2701 41 1 10.0170 -1.7574 -0.8989 42 1 8.9604 -3.0920 -0.3788 43 1 12.9455 -5.8451 2.6468 44 1 12.3014 -3.2285 1.5774 45 1 11.0150 -2.2524 0.8286 46 1 8.8804 -0.0509 -2.9604 47 1 8.8041 -0.2989 -1.1991 48 1 7.3976 1.6196 -1.8311 49 1 6.5095 0.6089 -2.9971 50 1 1.9724 -2.1223 0.0005 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069452906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = 27.838814 kcal Electronic energy + Delta-G solvation = -32569.375939 eV Core-core repulsion = 28212.658378 eV Total energy + Delta-G solvation = -4356.717561 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07435 -41.10929 -40.32039 -37.74499 -37.12750 -36.13638 -35.22086 -33.82685 -32.69996 -31.93953 -31.89994 -29.31196 -28.95456 -27.84465 -26.55462 -25.90778 -24.48050 -23.49915 -21.63613 -21.61441 -21.01005 -20.37982 -19.74763 -18.38718 -18.11408 -17.88925 -17.45198 -17.11510 -16.66810 -16.36054 -16.09098 -15.96754 -15.81130 -15.64411 -15.34483 -14.84531 -14.72897 -14.59585 -14.33055 -14.29239 -14.13652 -13.88825 -13.84624 -13.64522 -13.41625 -13.22226 -13.12790 -13.05649 -13.03637 -12.87438 -12.64680 -12.57185 -12.36726 -12.30853 -12.19672 -12.13272 -11.75291 -11.54970 -11.30419 -11.12975 -10.64380 -10.44503 -10.30153 -9.93454 -9.41653 -9.15648 -8.42853 -5.99914 1.05425 1.39008 1.46936 1.55422 1.62352 1.78365 1.96521 2.02933 2.20458 2.32997 2.68296 2.76067 2.97593 3.13421 3.51059 3.53556 3.78148 3.86934 3.93065 3.96290 3.99697 4.05555 4.09475 4.15852 4.20954 4.28402 4.36531 4.45083 4.50760 4.54164 4.59604 4.63996 4.69209 4.80277 4.81434 4.88075 4.90495 4.98089 5.00621 5.04308 5.16932 5.29684 5.37497 5.46352 5.83043 5.86467 5.93122 6.03363 6.15640 6.25968 6.36829 6.88216 6.96763 7.10096 7.33025 7.89987 8.60800 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.002079 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.165874 B =13462.628857 C =14344.344839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.257 4.257 3 C 0.026 3.974 4 N -0.307 5.307 5 N -0.376 5.376 6 C 0.138 3.862 7 C 0.096 3.904 8 H 0.061 0.939 9 C 0.020 3.980 10 N -0.532 5.532 11 C 0.087 3.913 12 C -0.158 4.158 13 C 0.454 3.546 14 O -0.613 6.613 15 N -0.456 5.456 16 C -0.341 4.341 17 H 0.083 0.917 18 C 0.005 3.995 19 N -0.892 5.892 20 Si 0.985 3.015 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.224 3.776 25 C 0.255 3.745 26 N -0.503 5.503 27 C 0.010 3.990 28 C 0.068 3.932 29 O -0.376 6.376 30 C 0.043 3.957 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.196 0.804 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.274 0.726 44 H 0.120 0.880 45 H 0.133 0.867 46 H 0.099 0.901 47 H 0.050 0.950 48 H 0.113 0.887 49 H 0.052 0.948 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.205 13.910 -2.905 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.268 4.268 3 C -0.161 4.161 4 N -0.128 5.128 5 N -0.159 5.159 6 C 0.017 3.983 7 C 0.037 3.963 8 H 0.079 0.921 9 C -0.109 4.109 10 N -0.255 5.255 11 C -0.041 4.041 12 C -0.199 4.199 13 C 0.244 3.756 14 O -0.499 6.499 15 N -0.176 5.176 16 C -0.469 4.469 17 H 0.100 0.900 18 C -0.198 4.198 19 N -0.530 5.530 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.206 1.206 23 H -0.208 1.208 24 C 0.097 3.903 25 C -0.063 4.063 26 N -0.183 5.183 27 C -0.118 4.118 28 C -0.009 4.009 29 O -0.295 6.295 30 C -0.102 4.102 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.213 0.787 35 H 0.159 0.841 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.128 0.872 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.138 0.862 45 H 0.151 0.849 46 H 0.117 0.883 47 H 0.068 0.932 48 H 0.131 0.869 49 H 0.071 0.929 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -17.184 13.105 -2.629 21.770 hybrid contribution 1.189 -1.117 0.531 1.716 sum -15.994 11.988 -2.098 20.098 Atomic orbital electron populations 1.20058 0.87638 1.02854 1.01936 1.20532 0.98371 0.91611 1.16294 1.24314 0.90125 1.01064 1.00554 1.77547 1.21684 0.89726 1.23799 1.48604 1.05740 1.04600 1.56926 1.21900 0.83313 0.93972 0.99145 1.22234 0.93286 0.83288 0.97532 0.92075 1.22781 0.94436 0.99834 0.93860 1.62532 1.17300 1.02611 1.43044 1.21757 0.90869 0.96407 0.95069 1.22213 0.96005 0.99902 1.01820 1.20897 0.84133 0.85994 0.84533 1.90521 1.74360 1.55595 1.29409 1.43815 1.26066 1.38827 1.08853 1.19555 1.08872 1.23882 0.94573 0.89953 1.25908 1.02723 0.96330 0.94796 1.69912 1.36758 1.43704 1.02668 0.85102 0.78346 0.78523 0.77047 1.18435 1.20630 1.20817 1.18962 0.95260 0.92694 0.83380 1.29783 0.91577 0.92290 0.92612 1.80959 1.16061 1.10136 1.11173 1.22956 0.98067 0.88487 1.02252 1.22710 0.89340 0.97974 0.90880 1.88147 1.64392 1.29526 1.47427 1.22937 0.83621 1.01530 1.02157 0.91804 0.91320 0.91275 0.78731 0.84080 0.89562 0.88800 0.93403 0.91478 0.90047 0.87236 0.89918 0.91627 0.86200 0.84912 0.88297 0.93209 0.86893 0.92925 0.78291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.37 71.23 0.74 -0.01 16 2 C -0.26 -4.48 6.10 -20.14 -0.12 -4.60 16 3 C 0.03 0.53 11.96 85.24 1.02 1.55 16 4 N -0.31 -7.89 11.58 -57.02 -0.66 -8.55 16 5 N -0.38 -8.07 3.68 -348.05 -1.28 -9.35 16 6 C 0.14 2.53 6.21 86.38 0.54 3.07 16 7 C 0.10 2.01 3.02 30.63 0.09 2.10 16 8 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 9 C 0.02 0.43 4.41 86.31 0.38 0.81 16 10 N -0.53 -12.49 4.94 -895.20 -4.42 -16.91 16 11 C 0.09 2.49 4.67 86.30 0.40 2.89 16 12 C -0.16 -4.79 3.59 29.85 0.11 -4.69 16 13 C 0.45 19.39 7.56 87.66 0.66 20.05 16 14 O -0.61 -31.11 15.65 -3.05 -0.05 -31.16 16 15 N -0.46 -20.31 2.60 -645.42 -1.68 -21.98 16 16 C -0.34 -17.31 9.27 84.04 0.78 -16.53 16 17 H 0.08 4.51 7.43 -2.91 -0.02 4.49 16 18 C 0.00 0.23 4.84 84.93 0.41 0.64 16 19 N -0.89 -44.01 9.59 21.66 0.21 -43.80 16 20 Si 0.99 39.44 29.60 68.60 2.03 41.47 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 24 C 0.22 8.20 4.91 84.57 0.42 8.62 16 25 C 0.26 10.61 12.83 89.42 1.15 11.75 16 26 N -0.50 -22.71 18.55 20.03 0.37 -22.34 16 27 C 0.01 0.21 5.33 86.31 0.46 0.67 16 28 C 0.07 1.34 7.01 72.01 0.50 1.85 16 29 O -0.38 -9.15 9.53 -148.98 -1.42 -10.57 16 30 C 0.04 0.73 11.36 83.54 0.95 1.68 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.14 1.63 8.07 -2.38 -0.02 1.61 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.11 6.40 -2.39 -0.02 1.10 16 39 H 0.07 2.15 8.10 -2.38 -0.02 2.13 16 40 H 0.08 2.41 8.06 -2.39 -0.02 2.39 16 41 H 0.11 2.72 5.88 -2.38 -0.01 2.70 16 42 H 0.08 2.52 5.77 -2.39 -0.01 2.51 16 43 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 44 H 0.12 4.55 6.63 -2.39 -0.02 4.53 16 45 H 0.13 3.46 6.69 -2.38 -0.02 3.44 16 46 H 0.10 1.79 8.12 -2.39 -0.02 1.77 16 47 H 0.05 1.01 6.59 -2.38 -0.02 1.00 16 48 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 49 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -71.82 407.78 2.55 -69.27 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.96 Total: 24.08 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 8.48 Total: 29.85 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -7.45 Total: -122.95 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.47 Total: -41.72 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -71.82 2.55 -69.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069452906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.107 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds