Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39875 * 126.03482 * 2 1 4 4 N 1.30843 * 108.20011 * 179.82025 * 3 2 1 5 5 N 1.40088 * 108.20395 * 0.44420 * 4 3 2 6 6 C 1.46500 * 126.03573 * 179.69634 * 5 4 3 7 7 C 1.52995 * 109.47036 * 305.02291 * 6 5 4 8 8 H 1.08995 * 109.50751 * 55.08917 * 7 6 5 9 9 C 1.53095 * 109.50745 * 175.22153 * 7 6 5 10 10 N 1.47012 * 109.26099 * 176.78349 * 9 7 6 11 11 C 1.46906 * 111.00114 * 177.60116 * 10 9 7 12 12 C 1.52993 * 109.46999 * 189.68204 * 11 10 9 13 13 C 1.50707 * 109.46900 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99922 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00013 * 179.97438 * 15 13 12 17 17 H 1.08007 * 120.00154 * 20.21247 * 16 15 13 18 18 C 1.38955 * 120.00285 * 200.21077 * 16 15 13 19 19 N 1.31414 * 119.99276 * 21.43723 * 18 16 15 20 20 Si 1.86795 * 120.00356 * 201.43429 * 18 16 15 21 21 H 1.48503 * 109.47141 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47100 * 120.00010 * 20 18 16 23 23 H 1.48499 * 109.47473 * 240.00195 * 20 18 16 24 24 C 1.46503 * 119.99850 * 359.97438 * 15 13 12 25 25 C 1.47192 * 109.47324 * 83.95517 * 24 15 13 26 26 N 9.92068 * 153.64384 * 70.95561 * 4 1 2 27 27 C 1.47011 * 110.75042 * 301.38169 * 10 9 7 28 28 C 1.53096 * 109.25971 * 58.61938 * 27 10 9 29 29 O 1.43018 * 109.25527 * 303.14734 * 28 27 10 30 30 C 1.34951 * 107.92662 * 359.71523 * 5 4 3 31 31 H 1.08998 * 109.46861 * 269.68416 * 1 2 3 32 32 H 1.08997 * 109.46938 * 149.69096 * 1 2 3 33 33 H 1.08995 * 109.47462 * 29.68244 * 1 2 3 34 34 H 1.08001 * 125.89992 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.46920 * 65.02541 * 6 5 4 36 36 H 1.09003 * 109.46668 * 185.02200 * 6 5 4 37 37 H 1.09003 * 109.50628 * 296.71894 * 9 7 6 38 38 H 1.09001 * 109.50994 * 56.84201 * 9 7 6 39 39 H 1.08999 * 109.46967 * 309.68534 * 11 10 9 40 40 H 1.09004 * 109.46460 * 69.68214 * 11 10 9 41 41 H 1.09003 * 109.47132 * 299.99703 * 12 11 10 42 42 H 1.08994 * 109.47355 * 60.00480 * 12 11 10 43 43 H 0.97010 * 119.99310 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.46640 * 203.95762 * 24 15 13 45 45 H 1.08998 * 109.47267 * 323.94730 * 24 15 13 46 46 H 1.08997 * 109.50480 * 298.67822 * 27 10 9 47 47 H 1.09010 * 109.53897 * 178.57333 * 27 10 9 48 48 H 1.08997 * 109.50664 * 183.21685 * 28 27 10 49 49 H 1.08996 * 109.50756 * 63.07891 * 28 27 10 50 50 H 1.07997 * 126.12948 * 179.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7304 0.0039 5 7 3.5845 -0.6704 -0.0038 6 6 4.7747 -1.5246 -0.0090 7 6 5.6712 -1.1429 -1.1885 8 1 5.9021 -0.0787 -1.1407 9 6 6.9695 -1.9519 -1.1266 10 7 7.7930 -1.6379 -2.3033 11 6 9.0758 -2.3521 -2.2538 12 6 9.9969 -1.8229 -3.3548 13 6 11.3127 -2.5560 -3.3044 14 8 11.4958 -3.4167 -2.4696 15 7 12.2863 -2.2545 -4.1862 16 6 13.4834 -2.9210 -4.1400 17 1 13.5495 -3.8790 -3.6456 18 6 14.6119 -2.3642 -4.7294 19 7 14.6665 -1.0700 -4.9509 20 14 16.0511 -3.4551 -5.2066 21 1 15.7422 -4.8643 -4.8545 22 1 16.2874 -3.3512 -6.6691 23 1 17.2677 -3.0172 -4.4763 24 6 12.0653 -1.2145 -5.1941 25 6 12.3516 0.1052 -4.6084 26 7 12.5726 1.1238 -4.1573 27 6 7.0668 -1.9445 -3.5442 28 6 5.7676 -1.1355 -3.5819 29 8 4.9945 -1.4301 -2.4153 30 6 2.3032 -1.0941 -0.0061 31 1 -0.3633 -0.0057 1.0276 32 1 -0.3633 -0.8872 -0.5186 33 1 -0.3634 0.8928 -0.5089 34 1 1.9949 2.1579 0.0004 35 1 5.3232 -1.3890 0.9231 36 1 4.4729 -2.5676 -0.1046 37 1 7.5166 -1.6933 -0.2200 38 1 6.7351 -3.0164 -1.1199 39 1 9.5428 -2.1933 -1.2818 40 1 8.9043 -3.4179 -2.4046 41 1 9.5299 -1.9818 -4.3268 42 1 10.1685 -0.7571 -3.2039 43 1 15.4545 -0.6812 -5.3621 44 1 12.7261 -1.3859 -6.0439 45 1 11.0283 -1.2466 -5.5280 46 1 6.8340 -3.0088 -3.5761 47 1 7.6846 -1.6811 -4.4028 48 1 5.1985 -1.4022 -4.4725 49 1 6.0019 -0.0713 -3.6040 50 1 1.9725 -2.1222 -0.0121 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069452907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = 46.412431 kcal Electronic energy + Delta-G solvation = -31925.546545 eV Core-core repulsion = 27569.634397 eV Total energy + Delta-G solvation = -4355.912148 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.39828 -39.89945 -38.87180 -36.30017 -35.67550 -34.51776 -34.33751 -32.12893 -31.97623 -31.27904 -30.77481 -28.47383 -27.48327 -26.68165 -25.40006 -24.58661 -23.71891 -22.17497 -20.93733 -20.66515 -20.20316 -19.01429 -17.92751 -17.20464 -16.88607 -16.70542 -16.44470 -15.93589 -15.56436 -15.36955 -15.01753 -14.77097 -14.64472 -14.29655 -14.16740 -14.03344 -13.77169 -13.59073 -13.29247 -13.27149 -13.01165 -12.78502 -12.60008 -12.50159 -12.27244 -12.11920 -12.03279 -11.90943 -11.68825 -11.54949 -11.40311 -11.24923 -11.12978 -10.86814 -10.74287 -10.62207 -10.54817 -10.40271 -10.29583 -9.81885 -9.58712 -9.29973 -8.65371 -8.50166 -8.44703 -8.06318 -6.53767 -4.04680 1.72194 2.26588 2.62329 3.05701 3.19596 3.25367 3.38605 3.49005 3.62556 3.79772 3.97395 4.10913 4.24728 4.54999 4.60272 4.67430 4.76408 4.80622 4.82763 4.86095 4.97546 4.99609 5.05101 5.10132 5.17894 5.21134 5.25330 5.37302 5.41490 5.43533 5.45942 5.58895 5.59906 5.65197 5.70246 5.75336 5.82656 5.85348 5.93964 6.11528 6.19640 6.26063 6.43462 6.48342 6.80376 6.84218 6.93242 6.95845 7.43931 7.53482 7.87624 8.24122 8.74082 8.96455 9.15854 9.69738 10.52534 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.025611 B = 0.001721 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.001045 B =16265.412579 C =16678.153166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.249 4.249 3 C 0.046 3.954 4 N -0.290 5.290 5 N -0.362 5.362 6 C 0.143 3.857 7 C 0.083 3.917 8 H 0.084 0.916 9 C 0.028 3.972 10 N -0.537 5.537 11 C 0.078 3.922 12 C -0.132 4.132 13 C 0.458 3.542 14 O -0.576 6.576 15 N -0.443 5.443 16 C -0.316 4.316 17 H 0.108 0.892 18 C 0.032 3.968 19 N -0.875 5.875 20 Si 0.926 3.074 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.283 1.283 24 C 0.223 3.777 25 C 0.244 3.756 26 N -0.469 5.469 27 C 0.013 3.987 28 C 0.068 3.932 29 O -0.380 6.380 30 C 0.061 3.939 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.180 0.820 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.273 0.727 44 H 0.123 0.877 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.060 0.940 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.969 -1.203 3.259 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.260 4.260 3 C -0.140 4.140 4 N -0.111 5.111 5 N -0.144 5.144 6 C 0.021 3.979 7 C 0.024 3.976 8 H 0.101 0.899 9 C -0.101 4.101 10 N -0.262 5.262 11 C -0.049 4.049 12 C -0.172 4.172 13 C 0.246 3.754 14 O -0.459 6.459 15 N -0.163 5.163 16 C -0.443 4.443 17 H 0.125 0.875 18 C -0.172 4.172 19 N -0.513 5.513 20 Si 0.752 3.248 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.209 1.209 24 C 0.095 3.905 25 C -0.074 4.074 26 N -0.149 5.149 27 C -0.115 4.115 28 C -0.009 4.009 29 O -0.299 6.299 30 C -0.086 4.086 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.197 0.803 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.141 0.859 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.110 0.890 48 H 0.116 0.884 49 H 0.078 0.922 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -23.111 0.668 4.262 23.510 hybrid contribution 0.295 -1.705 -0.599 1.831 sum -22.816 -1.037 3.663 23.132 Atomic orbital electron populations 1.20019 0.89490 1.02028 1.01287 1.20109 0.97007 0.91934 1.16956 1.23770 0.90013 0.99727 1.00473 1.77343 1.21236 0.88756 1.23793 1.48394 1.05141 1.04648 1.56183 1.21742 0.84269 0.93287 0.98572 1.22409 0.90311 1.00480 0.84400 0.89851 1.22651 0.93884 0.98323 0.95288 1.62153 1.04170 1.58532 1.01363 1.21785 0.87343 0.95541 1.00256 1.21575 0.94581 1.01600 0.99486 1.20087 0.86286 0.86679 0.82351 1.90539 1.82294 1.35346 1.37736 1.43627 1.13685 1.32058 1.26925 1.19724 0.84681 1.02976 1.36879 0.87477 1.25302 0.98673 0.95503 0.97683 1.69862 1.30597 1.09359 1.41498 0.85875 0.80354 0.80343 0.78229 1.19118 1.20451 1.20872 1.18667 1.00478 0.78659 0.92654 1.29229 0.90649 0.94125 0.93418 1.80886 1.11397 1.14099 1.08562 1.22874 0.95759 0.98788 0.94102 1.22655 0.91196 0.99282 0.87779 1.87953 1.41571 1.86844 1.13568 1.22289 0.84150 0.99941 1.02184 0.92369 0.92314 0.91990 0.80341 0.88016 0.87866 0.89181 0.93627 0.89866 0.93727 0.90210 0.89417 0.91660 0.85905 0.89846 0.93789 0.88965 0.88439 0.92170 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.37 36.01 0.37 -0.06 16 2 C -0.25 -2.23 6.10 -105.05 -0.64 -2.87 16 3 C 0.05 0.47 11.96 -17.36 -0.21 0.26 16 4 N -0.29 -3.56 12.34 30.63 0.38 -3.18 16 5 N -0.36 -3.77 3.63 -61.37 -0.22 -3.99 16 6 C 0.14 1.21 6.18 -4.04 -0.02 1.18 16 7 C 0.08 0.87 2.92 -26.68 -0.08 0.79 16 8 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 9 C 0.03 0.30 4.93 -3.71 -0.02 0.28 16 10 N -0.54 -6.83 4.73 -234.31 -1.11 -7.94 16 11 C 0.08 1.18 4.25 -3.82 -0.02 1.16 16 12 C -0.13 -2.16 4.24 -27.88 -0.12 -2.28 16 13 C 0.46 9.97 7.56 -10.98 -0.08 9.89 16 14 O -0.58 -14.54 15.65 5.55 0.09 -14.45 16 15 N -0.44 -10.04 2.60 -117.93 -0.31 -10.35 16 16 C -0.32 -7.99 9.27 -14.93 -0.14 -8.13 16 17 H 0.11 2.87 7.43 -52.48 -0.39 2.48 16 18 C 0.03 0.79 4.84 -17.47 -0.08 0.71 16 19 N -0.87 -21.97 9.58 55.50 0.53 -21.43 16 20 Si 0.93 19.39 29.60 -169.99 -5.03 14.36 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.22 4.28 4.91 -6.83 -0.03 4.25 16 25 C 0.24 5.32 12.82 -20.77 -0.27 5.06 16 26 N -0.47 -11.14 18.54 42.14 0.78 -10.35 16 27 C 0.01 0.14 5.43 -3.71 -0.02 0.12 16 28 C 0.07 0.70 7.01 37.21 0.26 0.96 16 29 O -0.38 -4.43 10.42 -35.23 -0.37 -4.80 16 30 C 0.06 0.54 11.36 -17.22 -0.20 0.34 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.18 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 37 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 1.37 8.00 -51.93 -0.42 0.95 16 40 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.08 1.09 5.78 -51.93 -0.30 0.79 16 42 H 0.09 1.50 7.49 -51.93 -0.39 1.12 16 43 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 44 H 0.12 2.41 6.63 -51.93 -0.34 2.07 16 45 H 0.08 1.20 6.69 -51.93 -0.35 0.85 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.95 6.37 -51.92 -0.33 0.62 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 412.81 15.07 6.22 6.22 Total: -1.00 -33.52 412.81 -7.89 -41.41 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.56 Total: 2.84 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -1.29 Total: 11.67 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.05 Total: -57.24 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.28 Total: -19.25 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.52 -7.89 -41.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069452907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.823 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds