Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39875 * 126.03482 * 2 1 4 4 N 1.30843 * 108.20011 * 179.82025 * 3 2 1 5 5 N 1.40088 * 108.20395 * 0.44420 * 4 3 2 6 6 C 1.46500 * 126.03573 * 179.69634 * 5 4 3 7 7 C 1.52995 * 109.47036 * 305.02291 * 6 5 4 8 8 H 1.08995 * 109.50751 * 55.08917 * 7 6 5 9 9 C 1.53095 * 109.50745 * 175.22153 * 7 6 5 10 10 N 1.47012 * 109.26099 * 176.78349 * 9 7 6 11 11 C 1.46906 * 111.00114 * 177.60116 * 10 9 7 12 12 C 1.52993 * 109.46999 * 189.68204 * 11 10 9 13 13 C 1.50707 * 109.46900 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99922 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00013 * 179.97438 * 15 13 12 17 17 H 1.08007 * 120.00154 * 20.21247 * 16 15 13 18 18 C 1.38955 * 120.00285 * 200.21077 * 16 15 13 19 19 N 1.31414 * 119.99276 * 21.43723 * 18 16 15 20 20 Si 1.86795 * 120.00356 * 201.43429 * 18 16 15 21 21 H 1.48503 * 109.47141 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47100 * 120.00010 * 20 18 16 23 23 H 1.48499 * 109.47473 * 240.00195 * 20 18 16 24 24 C 1.46503 * 119.99850 * 359.97438 * 15 13 12 25 25 C 1.47192 * 109.47324 * 83.95517 * 24 15 13 26 26 N 9.92068 * 153.64384 * 70.95561 * 4 1 2 27 27 C 1.47011 * 110.75042 * 301.38169 * 10 9 7 28 28 C 1.53096 * 109.25971 * 58.61938 * 27 10 9 29 29 O 1.43018 * 109.25527 * 303.14734 * 28 27 10 30 30 C 1.34951 * 107.92662 * 359.71523 * 5 4 3 31 31 H 1.08998 * 109.46861 * 269.68416 * 1 2 3 32 32 H 1.08997 * 109.46938 * 149.69096 * 1 2 3 33 33 H 1.08995 * 109.47462 * 29.68244 * 1 2 3 34 34 H 1.08001 * 125.89992 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.46920 * 65.02541 * 6 5 4 36 36 H 1.09003 * 109.46668 * 185.02200 * 6 5 4 37 37 H 1.09003 * 109.50628 * 296.71894 * 9 7 6 38 38 H 1.09001 * 109.50994 * 56.84201 * 9 7 6 39 39 H 1.08999 * 109.46967 * 309.68534 * 11 10 9 40 40 H 1.09004 * 109.46460 * 69.68214 * 11 10 9 41 41 H 1.09003 * 109.47132 * 299.99703 * 12 11 10 42 42 H 1.08994 * 109.47355 * 60.00480 * 12 11 10 43 43 H 0.97010 * 119.99310 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.46640 * 203.95762 * 24 15 13 45 45 H 1.08998 * 109.47267 * 323.94730 * 24 15 13 46 46 H 1.08997 * 109.50480 * 298.67822 * 27 10 9 47 47 H 1.09010 * 109.53897 * 178.57333 * 27 10 9 48 48 H 1.08997 * 109.50664 * 183.21685 * 28 27 10 49 49 H 1.08996 * 109.50756 * 63.07891 * 28 27 10 50 50 H 1.07997 * 126.12948 * 179.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7304 0.0039 5 7 3.5845 -0.6704 -0.0038 6 6 4.7747 -1.5246 -0.0090 7 6 5.6712 -1.1429 -1.1885 8 1 5.9021 -0.0787 -1.1407 9 6 6.9695 -1.9519 -1.1266 10 7 7.7930 -1.6379 -2.3033 11 6 9.0758 -2.3521 -2.2538 12 6 9.9969 -1.8229 -3.3548 13 6 11.3127 -2.5560 -3.3044 14 8 11.4958 -3.4167 -2.4696 15 7 12.2863 -2.2545 -4.1862 16 6 13.4834 -2.9210 -4.1400 17 1 13.5495 -3.8790 -3.6456 18 6 14.6119 -2.3642 -4.7294 19 7 14.6665 -1.0700 -4.9509 20 14 16.0511 -3.4551 -5.2066 21 1 15.7422 -4.8643 -4.8545 22 1 16.2874 -3.3512 -6.6691 23 1 17.2677 -3.0172 -4.4763 24 6 12.0653 -1.2145 -5.1941 25 6 12.3516 0.1052 -4.6084 26 7 12.5726 1.1238 -4.1573 27 6 7.0668 -1.9445 -3.5442 28 6 5.7676 -1.1355 -3.5819 29 8 4.9945 -1.4301 -2.4153 30 6 2.3032 -1.0941 -0.0061 31 1 -0.3633 -0.0057 1.0276 32 1 -0.3633 -0.8872 -0.5186 33 1 -0.3634 0.8928 -0.5089 34 1 1.9949 2.1579 0.0004 35 1 5.3232 -1.3890 0.9231 36 1 4.4729 -2.5676 -0.1046 37 1 7.5166 -1.6933 -0.2200 38 1 6.7351 -3.0164 -1.1199 39 1 9.5428 -2.1933 -1.2818 40 1 8.9043 -3.4179 -2.4046 41 1 9.5299 -1.9818 -4.3268 42 1 10.1685 -0.7571 -3.2039 43 1 15.4545 -0.6812 -5.3621 44 1 12.7261 -1.3859 -6.0439 45 1 11.0283 -1.2466 -5.5280 46 1 6.8340 -3.0088 -3.5761 47 1 7.6846 -1.6811 -4.4028 48 1 5.1985 -1.4022 -4.4725 49 1 6.0019 -0.0713 -3.6040 50 1 1.9725 -2.1222 -0.0121 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069452907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = 23.958702 kcal Electronic energy + Delta-G solvation = -31926.520212 eV Core-core repulsion = 27569.634397 eV Total energy + Delta-G solvation = -4356.885815 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09027 -40.96415 -40.38848 -37.72116 -37.07068 -36.13474 -35.22958 -33.83655 -32.75895 -32.24598 -31.85127 -29.38410 -29.06761 -27.66260 -26.57917 -25.72851 -24.65735 -23.30029 -21.64938 -21.56927 -20.92218 -20.60269 -19.73088 -18.39039 -18.05983 -17.81825 -17.54135 -17.14683 -16.60383 -16.46638 -16.21922 -16.05597 -15.71705 -15.59460 -15.31659 -15.01768 -14.78170 -14.70359 -14.29968 -14.27282 -14.02998 -13.89771 -13.82551 -13.66999 -13.40659 -13.29064 -13.10207 -13.02718 -12.96687 -12.89888 -12.66518 -12.46489 -12.36328 -12.34190 -12.21742 -12.06724 -11.80156 -11.60751 -11.34603 -11.13201 -10.70843 -10.43774 -10.32948 -9.91380 -9.43550 -9.16218 -8.41270 -5.98286 1.03245 1.37349 1.47773 1.59742 1.61533 1.81224 1.94217 2.06572 2.26797 2.34911 2.59789 2.64008 2.99808 3.24221 3.52313 3.59955 3.79865 3.86990 3.89659 4.00853 4.04684 4.06915 4.08189 4.14520 4.25797 4.33063 4.42222 4.44729 4.51277 4.54035 4.58157 4.66674 4.69792 4.81898 4.84674 4.89342 4.91072 4.97425 4.98652 5.03132 5.06086 5.29976 5.37103 5.48392 5.81856 5.87282 5.91783 6.04915 6.09227 6.20763 6.39099 6.82510 7.02534 7.11929 7.35126 7.91850 8.62888 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.025611 B = 0.001721 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.001045 B =16265.412579 C =16678.153166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.259 4.259 3 C 0.035 3.965 4 N -0.336 5.336 5 N -0.371 5.371 6 C 0.141 3.859 7 C 0.092 3.908 8 H 0.057 0.943 9 C 0.029 3.971 10 N -0.546 5.546 11 C 0.089 3.911 12 C -0.118 4.118 13 C 0.452 3.548 14 O -0.618 6.618 15 N -0.455 5.455 16 C -0.341 4.341 17 H 0.082 0.918 18 C 0.005 3.995 19 N -0.893 5.893 20 Si 0.985 3.015 21 H -0.270 1.270 22 H -0.263 1.263 23 H -0.291 1.291 24 C 0.223 3.777 25 C 0.257 3.743 26 N -0.509 5.509 27 C 0.013 3.987 28 C 0.069 3.931 29 O -0.391 6.391 30 C 0.056 3.944 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.196 0.804 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.274 0.726 44 H 0.121 0.879 45 H 0.140 0.860 46 H 0.047 0.953 47 H 0.102 0.898 48 H 0.120 0.880 49 H 0.050 0.950 50 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.846 -1.994 2.170 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.270 4.270 3 C -0.150 4.150 4 N -0.157 5.157 5 N -0.152 5.152 6 C 0.020 3.980 7 C 0.033 3.967 8 H 0.075 0.925 9 C -0.100 4.100 10 N -0.271 5.271 11 C -0.039 4.039 12 C -0.158 4.158 13 C 0.242 3.758 14 O -0.503 6.503 15 N -0.175 5.175 16 C -0.468 4.468 17 H 0.100 0.900 18 C -0.197 4.197 19 N -0.531 5.531 20 Si 0.810 3.190 21 H -0.194 1.194 22 H -0.188 1.188 23 H -0.217 1.217 24 C 0.097 3.903 25 C -0.061 4.061 26 N -0.189 5.189 27 C -0.115 4.115 28 C -0.008 4.008 29 O -0.310 6.310 30 C -0.090 4.090 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.213 0.787 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.158 0.842 46 H 0.066 0.934 47 H 0.121 0.879 48 H 0.137 0.863 49 H 0.068 0.932 50 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -25.012 -0.100 3.154 25.210 hybrid contribution 0.836 -1.456 -0.217 1.693 sum -24.176 -1.556 2.937 24.403 Atomic orbital electron populations 1.20053 0.87613 1.02804 1.01994 1.20512 0.98401 0.91541 1.16587 1.24214 0.89856 1.01089 0.99844 1.77279 1.22582 0.90204 1.25681 1.48540 1.06062 1.04213 1.56423 1.21896 0.83894 0.94223 0.98017 1.22291 0.90596 0.98827 0.84948 0.92509 1.22683 0.93726 0.98924 0.94679 1.62119 1.03843 1.58276 1.02877 1.21543 0.88306 0.95315 0.98688 1.21486 0.91994 1.00290 1.02026 1.20993 0.87679 0.85959 0.81186 1.90510 1.83361 1.37219 1.39250 1.43806 1.13153 1.32543 1.28006 1.19630 0.86451 1.02798 1.37933 0.90008 1.25909 1.00366 0.96421 0.97032 1.69941 1.31184 1.10252 1.41732 0.84996 0.77047 0.78496 0.78483 1.19431 1.18757 1.21726 1.19034 1.03735 0.76300 0.91260 1.29751 0.89480 0.94304 0.92516 1.80889 1.12816 1.15506 1.09723 1.22953 0.95969 0.99098 0.93475 1.22739 0.91191 0.98613 0.88260 1.87943 1.42190 1.86747 1.14106 1.22867 0.83585 1.01388 1.01172 0.91634 0.91309 0.91457 0.78715 0.86932 0.85407 0.88953 0.92630 0.91900 0.94307 0.86507 0.89690 0.91642 0.86105 0.84226 0.93449 0.87938 0.86264 0.93183 0.78416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.37 71.24 0.74 0.05 16 2 C -0.26 -4.29 6.10 -20.14 -0.12 -4.41 16 3 C 0.04 0.70 11.96 85.24 1.02 1.72 16 4 N -0.34 -8.22 12.34 -57.02 -0.70 -8.92 16 5 N -0.37 -7.34 3.63 -348.07 -1.26 -8.60 16 6 C 0.14 2.19 6.18 86.38 0.53 2.72 16 7 C 0.09 1.86 2.92 30.62 0.09 1.95 16 8 H 0.06 1.45 8.06 -2.39 -0.02 1.44 16 9 C 0.03 0.58 4.93 86.31 0.43 1.01 16 10 N -0.55 -13.16 4.73 -895.21 -4.23 -17.40 16 11 C 0.09 2.62 4.25 86.30 0.37 2.99 16 12 C -0.12 -3.67 4.24 29.85 0.13 -3.55 16 13 C 0.45 19.54 7.56 87.66 0.66 20.20 16 14 O -0.62 -31.74 15.65 -3.05 -0.05 -31.79 16 15 N -0.46 -20.43 2.60 -645.41 -1.68 -22.10 16 16 C -0.34 -17.39 9.27 84.04 0.78 -16.61 16 17 H 0.08 4.52 7.43 -2.91 -0.02 4.50 16 18 C 0.00 0.24 4.84 84.93 0.41 0.65 16 19 N -0.89 -44.44 9.58 21.66 0.21 -44.23 16 20 Si 0.99 39.61 29.60 68.60 2.03 41.64 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.22 8.17 4.91 84.57 0.42 8.59 16 25 C 0.26 10.96 12.82 89.44 1.15 12.10 16 26 N -0.51 -23.95 18.54 20.00 0.37 -23.58 16 27 C 0.01 0.25 5.43 86.31 0.47 0.72 16 28 C 0.07 1.30 7.01 72.01 0.50 1.80 16 29 O -0.39 -8.50 10.42 -148.98 -1.55 -10.05 16 30 C 0.06 0.90 11.36 83.54 0.95 1.84 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.13 1.31 8.07 -2.39 -0.02 1.30 16 37 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 2.08 8.00 -2.39 -0.02 2.07 16 40 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 41 H 0.12 2.77 5.78 -2.39 -0.01 2.75 16 42 H 0.08 2.78 7.49 -2.39 -0.02 2.76 16 43 H 0.27 13.16 8.31 -92.70 -0.77 12.39 16 44 H 0.12 4.54 6.63 -2.38 -0.02 4.53 16 45 H 0.14 3.49 6.69 -2.39 -0.02 3.47 16 46 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 47 H 0.10 1.78 6.37 -2.38 -0.02 1.76 16 48 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -74.31 412.81 2.60 -71.71 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.95 Total: 21.55 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: 8.51 Total: 31.78 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -7.30 Total: -124.83 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.60 Total: -41.84 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -74.31 2.60 -71.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069452907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.667 kcal (2) G-P(sol) polarization free energy of solvation -74.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds