Wall clock time and date at job start Tue Mar 31 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46940 * 2 1 4 4 C 1.53001 * 109.46809 * 119.99719 * 2 1 3 5 5 H 1.08995 * 109.47572 * 299.99684 * 4 2 1 6 6 N 1.46499 * 109.46763 * 179.97438 * 4 2 1 7 7 C 1.34782 * 119.99701 * 84.99981 * 6 4 2 8 8 O 1.21277 * 120.00186 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99936 * 179.97438 * 7 6 4 10 10 S 1.80999 * 109.47335 * 180.02562 * 9 7 6 11 11 C 1.76194 * 99.99997 * 180.02562 * 10 9 7 12 12 H 1.07993 * 120.00454 * 359.97438 * 11 10 9 13 13 C 1.38808 * 119.99711 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00041 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99767 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46998 * 89.99980 * 15 13 11 17 17 H 1.48499 * 109.46941 * 209.99937 * 15 13 11 18 18 H 1.48506 * 109.47143 * 329.99995 * 15 13 11 19 19 C 1.50701 * 109.47081 * 60.00164 * 4 2 1 20 20 C 1.38255 * 119.99838 * 79.99715 * 19 4 2 21 21 C 1.38220 * 119.99681 * 179.97438 * 20 19 4 22 22 C 1.38253 * 120.00046 * 0.05260 * 21 20 19 23 23 C 1.38205 * 119.99884 * 359.94758 * 22 21 20 24 24 C 1.50709 * 119.99867 * 180.02562 * 23 22 21 25 25 F 1.39904 * 109.46572 * 270.02093 * 24 23 22 26 26 F 1.39898 * 109.47232 * 30.01934 * 24 23 22 27 27 F 1.39899 * 109.47199 * 150.02166 * 24 23 22 28 28 C 1.38208 * 119.99804 * 260.01587 * 19 4 2 29 29 H 1.09004 * 109.46871 * 300.00304 * 1 2 3 30 30 H 1.09002 * 109.46984 * 60.00022 * 1 2 3 31 31 H 1.09005 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46871 * 239.99696 * 2 1 3 33 33 H 1.09006 * 109.47056 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46983 * 299.99336 * 3 2 1 35 35 H 1.08991 * 109.47530 * 59.99770 * 3 2 1 36 36 H 0.96999 * 120.00701 * 265.00385 * 6 4 2 37 37 H 1.09005 * 109.47444 * 300.00861 * 9 7 6 38 38 H 1.09009 * 109.46759 * 60.00114 * 9 7 6 39 39 H 0.96997 * 120.00205 * 179.97438 * 14 13 11 40 40 H 1.08000 * 120.00604 * 359.72524 * 20 19 4 41 41 H 1.08002 * 119.99604 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.99964 * 179.97438 * 22 21 20 43 43 H 1.07992 * 120.00457 * 0.02562 * 28 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1393 6 7 3.5050 -0.7217 1.2490 7 6 4.1793 0.3360 1.7419 8 8 3.5733 1.2880 2.1862 9 6 5.6863 0.3353 1.7422 10 16 6.2903 1.8816 2.4635 11 6 8.0281 1.6182 2.3405 12 1 8.4065 0.7014 1.9132 13 6 8.9109 2.5888 2.7938 14 7 8.4498 3.7060 3.3150 15 14 10.7533 2.3093 2.6640 16 1 11.2420 2.8273 1.3609 17 1 11.4413 3.0228 3.7698 18 1 11.0413 0.8555 2.7582 19 6 1.5376 -2.1420 1.2493 20 6 2.1720 -3.0995 0.4797 21 6 1.7115 -4.4027 0.4802 22 6 0.6160 -4.7486 1.2493 23 6 -0.0181 -3.7914 2.0186 24 6 -1.2119 -4.1685 2.8576 25 9 -2.3806 -4.0030 2.1064 26 9 -1.0988 -5.5049 3.2556 27 9 -1.2647 -3.3477 3.9892 28 6 0.4426 -2.4878 2.0184 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.9897 -1.4832 0.8940 37 1 6.0492 -0.5065 2.3319 38 1 6.0497 0.2451 0.7184 39 1 9.0667 4.3841 3.6321 40 1 3.0248 -2.8283 -0.1249 41 1 2.2073 -5.1508 -0.1207 42 1 0.2560 -5.7669 1.2494 43 1 -0.0534 -1.7397 2.6190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069509878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:45 Heat of formation + Delta-G solvation = -173.924231 kcal Electronic energy + Delta-G solvation = -29744.762616 eV Core-core repulsion = 25079.773487 eV Total energy + Delta-G solvation = -4664.989129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.49117 -48.00648 -47.95336 -40.66459 -39.11952 -36.43545 -33.46071 -32.45351 -32.30494 -31.70761 -29.32844 -26.99352 -26.45571 -26.00361 -25.40795 -22.92548 -22.03406 -20.61963 -20.04651 -18.82984 -18.68338 -18.63759 -17.76682 -16.79654 -16.54887 -16.14258 -15.60420 -15.28654 -15.08841 -14.83446 -14.82210 -14.67631 -14.43659 -14.32938 -14.12444 -14.11102 -14.09530 -13.81568 -13.33208 -13.17268 -13.05287 -12.79241 -12.64976 -12.52260 -12.22423 -11.98151 -11.77266 -11.62362 -11.38429 -11.08546 -11.04667 -10.85122 -10.79567 -10.76068 -9.84203 -9.68657 -9.50737 -9.27832 -9.09048 -8.89502 -8.26675 -6.52397 -6.24057 -3.94568 0.47189 0.75956 2.29201 2.89865 3.01801 3.08686 3.20572 3.26102 3.29504 3.35390 3.61485 3.70777 4.06902 4.16696 4.18309 4.37108 4.52323 4.68185 4.78172 4.84733 4.93321 5.01893 5.11315 5.16342 5.18537 5.37673 5.42560 5.53708 5.64156 5.68526 5.71380 5.80417 5.83718 5.84510 5.93989 5.98943 6.06711 6.10046 6.24453 6.29343 6.53025 6.62281 7.57167 7.61480 8.32781 8.55282 9.21463 10.83311 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.002099 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.306062 B =13335.242553 C =13851.841146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.141 4.141 4 C 0.190 3.810 5 H 0.100 0.900 6 N -0.734 5.734 7 C 0.534 3.466 8 O -0.508 6.508 9 C -0.155 4.155 10 S -0.057 6.057 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.082 4.082 20 C -0.082 4.082 21 C -0.115 4.115 22 C -0.074 4.074 23 C -0.180 4.180 24 C 0.509 3.491 25 F -0.177 7.177 26 F -0.178 7.178 27 F -0.175 7.175 28 C -0.058 4.058 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.968 -18.485 -7.546 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.199 4.199 4 C 0.085 3.915 5 H 0.118 0.882 6 N -0.389 5.389 7 C 0.321 3.679 8 O -0.381 6.381 9 C -0.305 4.305 10 S 0.169 5.831 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.082 4.082 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.092 4.092 23 C -0.182 4.182 24 C 0.454 3.546 25 F -0.158 7.158 26 F -0.159 7.159 27 F -0.156 7.156 28 C -0.076 4.076 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.959 -16.703 -6.673 26.869 hybrid contribution 1.925 -1.807 -0.629 2.714 sum -18.035 -18.511 -7.303 26.856 Atomic orbital electron populations 1.21864 0.94725 1.01621 1.02330 1.21520 0.95893 0.97519 0.96898 1.21895 1.02042 0.94212 1.01716 1.19872 0.80906 0.90556 1.00186 0.88172 1.46129 1.05566 1.21413 1.65798 1.20243 0.89520 0.81761 0.76399 1.90716 1.69682 1.33567 1.44162 1.23548 0.93422 1.08012 1.05534 1.85386 1.03955 1.14766 1.78945 1.22862 0.91110 1.06819 1.47648 0.90965 1.24990 0.99616 0.94468 0.94496 1.70010 1.35363 1.06794 1.38083 0.86176 0.82943 0.78441 0.77988 1.20268 1.20743 1.19707 1.19954 0.95695 0.95815 0.96763 1.21239 0.99014 0.92779 0.96978 1.21142 0.96306 0.96593 0.99222 1.20953 0.95024 0.98943 0.94254 1.19925 0.98170 0.96634 1.03453 1.18300 0.83241 0.74549 0.78471 1.93232 1.51241 1.95180 1.76168 1.93190 1.96121 1.35210 1.91378 1.93214 1.96702 1.72452 1.53262 1.20807 0.95469 0.94497 0.96857 0.92297 0.92297 0.92754 0.91178 0.92022 0.93453 0.91496 0.76906 0.89284 0.89293 0.92164 0.84916 0.84545 0.84686 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.79 37.16 0.33 -0.98 16 2 C -0.10 -1.02 2.68 -90.62 -0.24 -1.26 16 3 C -0.14 -1.87 7.72 37.16 0.29 -1.58 16 4 C 0.19 2.06 2.05 -69.08 -0.14 1.92 16 5 H 0.10 1.28 7.44 -51.93 -0.39 0.89 16 6 N -0.73 -8.87 4.92 -54.93 -0.27 -9.14 16 7 C 0.53 9.13 6.20 -10.98 -0.07 9.06 16 8 O -0.51 -10.41 12.99 5.56 0.07 -10.34 16 9 C -0.15 -2.96 6.16 36.01 0.22 -2.73 16 10 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 11 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 15 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.08 -0.72 4.05 -104.63 -0.42 -1.14 16 20 C -0.08 -0.58 9.05 -39.58 -0.36 -0.94 16 21 C -0.11 -0.72 10.05 -39.58 -0.40 -1.11 16 22 C -0.07 -0.52 9.40 -39.59 -0.37 -0.89 16 23 C -0.18 -1.53 5.45 -104.62 -0.57 -2.10 16 24 C 0.51 4.55 3.36 36.01 0.12 4.68 16 25 F -0.18 -1.65 17.30 2.25 0.04 -1.61 16 26 F -0.18 -1.60 16.46 2.25 0.04 -1.57 16 27 F -0.18 -1.74 16.46 2.25 0.04 -1.70 16 28 C -0.06 -0.51 8.06 -39.58 -0.32 -0.83 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 6.64 -51.93 -0.34 0.10 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.96 5.78 -51.93 -0.30 0.66 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 36 H 0.40 3.71 6.87 -40.82 -0.28 3.43 16 37 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 38 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.13 0.74 6.93 -52.49 -0.36 0.38 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.14 0.73 7.60 -52.48 -0.40 0.33 16 43 H 0.14 1.16 7.58 -52.49 -0.40 0.76 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -32.80 380.19 -7.96 -40.76 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.37 Total: 1.20 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.74 Total: -10.63 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.46 Total: -34.24 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.11 Total: -4.87 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.80 -7.96 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069509878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.165 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds