Wall clock time and date at job start Tue Mar 31 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 6 6 N 1.46500 * 109.47023 * 60.00568 * 4 2 1 7 7 C 1.34779 * 119.99793 * 274.99565 * 6 4 2 8 8 O 1.21279 * 120.00185 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99614 * 179.97438 * 7 6 4 10 10 S 1.81001 * 109.46685 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99680 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00521 * 359.97438 * 11 10 9 13 13 C 1.38803 * 120.00061 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99636 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00245 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47216 * 90.00077 * 15 13 11 17 17 H 1.48504 * 109.47358 * 210.00181 * 15 13 11 18 18 H 1.48502 * 109.47038 * 330.00133 * 15 13 11 19 19 C 1.50703 * 109.46912 * 180.02562 * 4 2 1 20 20 C 1.38264 * 119.99771 * 279.72879 * 19 4 2 21 21 C 1.38212 * 119.99399 * 179.76630 * 20 19 4 22 22 C 1.38252 * 120.00479 * 0.50742 * 21 20 19 23 23 C 1.38213 * 119.99698 * 359.74769 * 22 21 20 24 24 C 1.50707 * 120.00024 * 179.97438 * 23 22 21 25 25 F 1.39898 * 109.46945 * 270.01938 * 24 23 22 26 26 F 1.39901 * 109.46661 * 30.02143 * 24 23 22 27 27 F 1.39899 * 109.47146 * 150.01600 * 24 23 22 28 28 C 1.38211 * 120.00066 * 100.00513 * 19 4 2 29 29 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 30 30 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 31 31 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47514 * 240.00129 * 2 1 3 33 33 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 35 35 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 36 36 H 0.97004 * 120.00223 * 94.99655 * 6 4 2 37 37 H 1.09002 * 109.47423 * 300.00169 * 9 7 6 38 38 H 1.09002 * 109.46795 * 60.00420 * 9 7 6 39 39 H 0.97005 * 119.99742 * 179.97438 * 14 13 11 40 40 H 1.07997 * 119.99985 * 359.97438 * 20 19 4 41 41 H 1.08007 * 119.99818 * 180.22991 * 21 20 19 42 42 H 1.07997 * 120.00100 * 179.72674 * 22 21 20 43 43 H 1.07996 * 119.99872 * 359.97438 * 28 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 7 1.5517 -2.1024 1.2493 7 6 0.3297 -2.3852 1.7425 8 8 -0.3659 -1.4962 2.1860 9 6 -0.1728 -3.8060 1.7420 10 16 -1.8323 -3.8592 2.4626 11 6 -2.1637 -5.5854 2.3401 12 1 -1.4257 -6.2481 1.9127 13 6 -3.3737 -6.0936 2.7921 14 7 -4.2738 -5.2858 3.3117 15 14 -3.7254 -7.9235 2.6617 16 1 -3.2616 -8.6060 3.8963 17 1 -5.1858 -8.1365 2.4973 18 1 -3.0083 -8.4829 1.4877 19 6 3.5470 -0.7206 1.2496 20 6 4.2387 -1.6412 0.4843 21 6 5.6209 -1.6376 0.4809 22 6 6.3117 -0.7203 1.2508 23 6 5.6201 0.1966 2.0199 24 6 6.3731 1.1962 2.8596 25 9 6.6056 0.6572 4.1295 26 9 7.5957 1.4923 2.2475 27 9 5.6168 2.3668 2.9811 28 6 4.2375 0.1964 2.0193 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 2.1079 -2.8135 0.8942 37 1 -0.2095 -4.1780 0.7180 38 1 0.4998 -4.4294 2.3312 39 1 -5.1196 -5.6409 3.6273 40 1 3.6991 -2.3609 -0.1133 41 1 6.1613 -2.3543 -0.1197 42 1 7.3916 -0.7203 1.2515 43 1 3.6972 0.9128 2.6202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069509880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:48 Heat of formation + Delta-G solvation = -192.623651 kcal Electronic energy + Delta-G solvation = -29746.807894 eV Core-core repulsion = 25081.007897 eV Total energy + Delta-G solvation = -4665.799997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.106 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.20558 -48.72150 -48.68059 -41.55384 -40.13442 -37.43657 -34.58900 -34.52533 -33.00348 -32.40861 -30.72512 -27.90990 -27.71002 -27.11236 -26.76637 -23.53796 -22.75467 -21.84352 -20.97662 -19.92666 -19.53629 -19.39506 -19.16619 -17.88630 -17.43645 -17.12303 -16.86807 -16.79120 -16.18480 -15.90262 -15.72951 -15.57970 -15.38579 -15.14125 -15.08280 -14.94145 -14.83633 -14.80709 -14.64195 -14.45806 -13.95229 -13.76695 -13.52171 -13.49319 -13.32806 -13.15429 -12.95352 -12.87304 -12.71532 -12.55644 -12.32964 -12.17792 -11.80176 -11.72354 -11.64238 -11.13376 -10.87781 -10.25983 -10.23717 -10.15303 -9.84876 -8.63974 -8.33836 -6.10793 -0.11419 0.16970 1.28209 1.42639 1.47876 1.57365 1.62386 1.66540 2.22572 2.29107 2.47257 2.69016 2.97001 3.00469 3.33455 3.37472 3.43280 3.79522 3.86817 3.97257 4.01442 4.03753 4.17601 4.27865 4.33333 4.37764 4.49513 4.53340 4.65553 4.76044 4.80684 4.83457 4.97695 5.03597 5.11947 5.17755 5.26240 5.28150 5.34758 5.42938 5.46395 5.58528 5.73176 6.20667 6.50642 7.07865 7.28229 8.75144 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.002099 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.705125 B =13336.226003 C =13852.169207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.142 4.142 4 C 0.194 3.806 5 H 0.075 0.925 6 N -0.709 5.709 7 C 0.538 3.462 8 O -0.549 6.549 9 C -0.131 4.131 10 S -0.147 6.147 11 C -0.545 4.545 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.257 1.257 19 C -0.090 4.090 20 C -0.080 4.080 21 C -0.106 4.106 22 C -0.072 4.072 23 C -0.190 4.190 24 C 0.509 3.491 25 F -0.184 7.184 26 F -0.176 7.176 27 F -0.182 7.182 28 C -0.068 4.068 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.413 0.587 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.270 0.730 40 H 0.153 0.847 41 H 0.168 0.832 42 H 0.153 0.847 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.560 10.011 -9.494 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.200 4.200 4 C 0.089 3.911 5 H 0.093 0.907 6 N -0.364 5.364 7 C 0.324 3.676 8 O -0.426 6.426 9 C -0.282 4.282 10 S 0.080 5.920 11 C -0.693 4.693 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.181 1.181 19 C -0.091 4.091 20 C -0.098 4.098 21 C -0.124 4.124 22 C -0.090 4.090 23 C -0.191 4.191 24 C 0.455 3.545 25 F -0.165 7.165 26 F -0.158 7.158 27 F -0.164 7.164 28 C -0.087 4.087 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.252 0.748 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.171 0.829 41 H 0.186 0.814 42 H 0.171 0.829 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 25.266 11.542 -8.656 29.095 hybrid contribution 0.336 -1.804 -0.031 1.836 sum 25.602 9.738 -8.687 28.736 Atomic orbital electron populations 1.21820 0.95618 1.01004 1.01019 1.21464 0.95121 0.97227 0.97236 1.21807 1.01330 0.94460 1.02382 1.19831 0.89102 0.82623 0.99545 0.90686 1.45835 1.16866 1.09789 1.63928 1.19910 0.81569 0.89577 0.76591 1.90717 1.56885 1.48599 1.46384 1.23383 1.01722 0.97007 1.06092 1.85565 1.13962 1.11880 1.80560 1.23208 1.05580 0.93036 1.47492 0.89950 1.26111 0.94768 1.04423 0.93896 1.70184 1.07659 1.37511 1.39441 0.84977 0.77580 0.76348 0.79232 1.19415 1.20418 1.18115 1.19696 0.93926 0.97133 0.98338 1.21490 0.95067 0.96857 0.96361 1.21483 0.93691 0.98587 0.98609 1.21274 1.01605 0.92639 0.93477 1.19933 0.94557 1.00764 1.03872 1.18405 0.77406 0.80354 0.78373 1.93224 1.94757 1.85919 1.42615 1.93187 1.45923 1.93891 1.82754 1.93191 1.75997 1.51040 1.96123 1.20790 0.92376 0.98187 0.97304 0.94064 0.92254 0.94605 0.89295 0.91611 0.91427 0.93124 0.74843 0.87265 0.87511 0.92062 0.82943 0.81415 0.82941 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 7.71 71.98 0.56 -3.14 16 2 C -0.09 -1.78 2.68 -10.79 -0.03 -1.81 16 3 C -0.14 -2.36 8.79 71.98 0.63 -1.73 16 4 C 0.19 4.04 2.05 44.25 0.09 4.13 16 5 H 0.08 1.99 7.44 -2.39 -0.02 1.97 16 6 N -0.71 -16.14 4.92 -446.09 -2.19 -18.33 16 7 C 0.54 18.37 6.20 87.66 0.54 18.91 16 8 O -0.55 -23.48 12.98 -3.03 -0.04 -23.52 16 9 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 10 S -0.15 -7.95 20.57 -56.49 -1.16 -9.12 16 11 C -0.55 -30.61 9.50 67.96 0.65 -29.97 16 12 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 13 C 0.01 0.72 5.49 84.86 0.47 1.18 16 14 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 15 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 C -0.09 -1.41 4.05 -19.86 -0.08 -1.49 16 20 C -0.08 -0.84 9.06 22.27 0.20 -0.64 16 21 C -0.11 -0.87 10.05 22.27 0.22 -0.65 16 22 C -0.07 -0.78 9.40 22.27 0.21 -0.57 16 23 C -0.19 -2.89 5.45 -19.86 -0.11 -3.00 16 24 C 0.51 8.62 3.36 71.24 0.24 8.86 16 25 F -0.18 -3.55 17.30 44.97 0.78 -2.77 16 26 F -0.18 -2.83 16.46 44.97 0.74 -2.09 16 27 F -0.18 -3.41 16.46 44.97 0.74 -2.67 16 28 C -0.07 -1.13 8.06 22.27 0.18 -0.95 16 29 H 0.04 1.30 7.53 -2.39 -0.02 1.28 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 1.13 5.78 -2.39 -0.01 1.12 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 0.96 6.64 -2.39 -0.02 0.95 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.41 6.50 6.86 -92.71 -0.64 5.86 16 37 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 40 H 0.15 0.98 6.90 -2.91 -0.02 0.96 16 41 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 42 H 0.15 1.10 7.60 -2.91 -0.02 1.08 16 43 H 0.13 2.27 7.58 -2.91 -0.02 2.25 16 Total: -1.00 -74.50 380.16 5.81 -68.69 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.42 Total: 15.33 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 4.21 Total: -15.34 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -1.91 Total: -73.66 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.04 Total: -23.52 kcal Atomic # 9 Polarization: -9.79 SS G_CDS: 2.26 Total: -7.53 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.12 kcal Total: -74.50 5.81 -68.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069509880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.936 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds