Wall clock time and date at job start Tue Mar 31 2020 05:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.29947 * 126.28954 * 90.02383 * 4 3 2 6 6 O 1.21296 * 110.25471 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.80899 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.55107 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46846 * 269.97485 * 8 7 6 10 10 C 1.52994 * 109.47064 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47105 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99759 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00204 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99997 * 359.97438 * 13 11 10 15 15 C 1.50695 * 109.46826 * 90.00735 * 14 13 11 16 16 H 1.08001 * 120.00341 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99710 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99964 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00045 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46714 * 90.00435 * 19 17 15 21 21 H 1.48497 * 109.47373 * 210.00167 * 19 17 15 22 22 H 1.48501 * 109.47147 * 330.00806 * 19 17 15 23 23 C 1.46497 * 120.00346 * 180.02562 * 13 11 10 24 24 C 1.50707 * 109.47445 * 89.99057 * 23 13 11 25 25 C 1.34514 * 125.78555 * 90.00385 * 24 23 13 26 26 C 1.41380 * 106.84009 * 180.02562 * 25 24 23 27 27 C 1.34517 * 106.83974 * 0.02562 * 26 25 24 28 28 O 1.34298 * 125.79271 * 269.69805 * 24 23 13 29 29 N 1.31124 * 106.89716 * 359.77126 * 7 6 5 30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 36 36 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 37 37 H 1.09004 * 109.46902 * 29.97089 * 8 7 6 38 38 H 1.08992 * 109.47575 * 149.97859 * 8 7 6 39 39 H 1.08999 * 109.47035 * 299.99997 * 9 8 7 40 40 H 1.09008 * 109.47095 * 59.99950 * 9 8 7 41 41 H 1.08999 * 109.47356 * 300.00001 * 10 9 8 42 42 H 1.08996 * 109.47393 * 59.99904 * 10 9 8 43 43 H 1.08995 * 109.47160 * 210.00664 * 14 13 11 44 44 H 1.09004 * 109.46925 * 330.00219 * 14 13 11 45 45 H 0.96996 * 120.00692 * 179.97438 * 18 17 15 46 46 H 1.08998 * 109.47413 * 209.99432 * 23 13 11 47 47 H 1.09007 * 109.46798 * 329.99472 * 23 13 11 48 48 H 1.08002 * 126.58178 * 0.03489 * 25 24 23 49 49 H 1.07996 * 126.58182 * 179.97438 * 26 25 24 50 50 H 1.07998 * 125.78851 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 7 4.3164 1.4430 -1.0465 6 8 5.4821 1.4434 -0.7109 7 6 5.5695 1.4440 0.6227 8 6 6.8362 1.4453 1.4391 9 6 7.2655 0.0031 1.7164 10 6 8.5519 0.0043 2.5447 11 6 8.9751 -1.4161 2.8173 12 8 8.3128 -2.3385 2.3915 13 7 10.0891 -1.6614 3.5352 14 6 10.8889 -0.5471 4.0501 15 6 10.3936 -0.1647 5.4210 16 1 9.5656 -0.6980 5.8643 17 6 10.9969 0.8667 6.1090 18 7 10.5644 1.2008 7.3052 19 14 12.4285 1.7896 5.3420 20 1 11.9127 2.9428 4.5615 21 1 13.3315 2.2813 6.4135 22 1 13.1792 0.8783 4.4413 23 6 10.5008 -3.0422 3.7998 24 6 11.4117 -3.5151 2.6962 25 6 12.7515 -3.3974 2.6775 26 6 13.1960 -3.9699 1.4635 27 6 12.1011 -4.4026 0.8128 28 8 11.0239 -4.1306 1.5673 29 7 4.3425 1.4489 1.0850 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6764 1.9564 0.8900 37 1 7.6235 1.9590 0.8873 38 1 6.6593 1.9596 2.3836 39 1 6.4782 -0.5106 2.2681 40 1 7.4425 -0.5113 0.7718 41 1 9.3390 0.5180 1.9927 42 1 8.3754 0.5189 3.4892 43 1 11.9344 -0.8487 4.1126 44 1 10.7966 0.3069 3.3790 45 1 10.9889 1.9262 7.7894 46 1 11.0296 -3.0876 4.7519 47 1 9.6195 -3.6822 3.8428 48 1 13.3693 -2.9514 3.4429 49 1 14.2183 -4.0446 1.1235 50 1 12.0907 -4.8914 -0.1501 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069514334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:55 Heat of formation + Delta-G solvation = 27.598900 kcal Electronic energy + Delta-G solvation = -31686.127126 eV Core-core repulsion = 27297.106411 eV Total energy + Delta-G solvation = -4389.020715 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.62787 -42.28585 -39.32788 -36.71596 -35.83390 -35.25645 -34.21088 -32.88018 -32.58047 -32.09000 -30.64653 -28.36638 -28.01632 -27.95814 -25.53382 -23.84869 -23.02519 -22.49129 -21.90060 -21.43374 -20.84545 -20.31920 -18.57094 -18.05010 -17.49840 -17.33043 -16.90842 -16.41742 -16.02493 -15.63240 -15.49734 -15.20010 -14.98457 -14.75331 -14.25230 -14.18713 -13.82881 -13.69893 -13.21365 -12.88540 -12.70029 -12.62053 -12.57357 -12.49214 -12.36027 -12.32930 -12.11494 -12.01167 -11.82681 -11.73379 -11.46155 -11.36740 -11.18496 -11.14295 -10.96639 -10.94093 -10.74821 -10.60357 -10.38501 -9.90932 -9.75197 -9.67758 -9.28434 -8.80137 -8.29054 -7.96965 -6.28772 -4.31710 1.08745 1.92056 2.15166 2.74767 2.80064 3.11038 3.11891 3.20593 3.22645 3.39836 3.50797 3.83702 3.94204 4.19824 4.61967 4.66349 4.78643 4.85755 4.95126 4.96440 4.99959 5.02341 5.23036 5.24869 5.26910 5.28428 5.37906 5.43487 5.45988 5.53208 5.61714 5.66311 5.74750 5.77357 5.84611 5.93897 5.94687 5.96591 5.99814 6.00651 6.16081 6.28085 6.30565 6.33525 6.44165 6.58418 6.72023 7.14861 7.35122 7.41330 7.99033 8.11497 8.30401 8.73259 8.81486 9.29899 10.83484 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.008099 B = 0.002442 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.540031 B =11465.485314 C =13635.603218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.028 4.028 4 C 0.169 3.831 5 N -0.390 5.390 6 O 0.074 5.926 7 C 0.196 3.804 8 C -0.032 4.032 9 C -0.098 4.098 10 C -0.136 4.136 11 C 0.521 3.479 12 O -0.561 6.561 13 N -0.588 5.588 14 C 0.208 3.792 15 C -0.544 4.544 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.888 5.888 19 Si 0.868 3.132 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.264 1.264 23 C 0.195 3.805 24 C -0.014 4.014 25 C -0.206 4.206 26 C -0.217 4.217 27 C -0.051 4.051 28 O -0.166 6.166 29 N -0.481 5.481 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.035 0.965 44 H 0.032 0.968 45 H 0.267 0.733 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.148 0.852 49 H 0.144 0.856 50 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 -1.552 -13.599 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.066 4.066 4 C -0.104 4.104 5 N -0.099 5.099 6 O 0.016 5.984 7 C -0.024 4.024 8 C -0.071 4.071 9 C -0.137 4.137 10 C -0.176 4.176 11 C 0.310 3.690 12 O -0.441 6.441 13 N -0.319 5.319 14 C 0.087 3.913 15 C -0.583 4.583 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.525 5.525 19 Si 0.695 3.305 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.188 1.188 23 C 0.071 3.929 24 C -0.066 4.066 25 C -0.226 4.226 26 C -0.237 4.237 27 C -0.119 4.119 28 O -0.061 6.061 29 N -0.215 5.215 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.132 0.868 47 H 0.111 0.889 48 H 0.166 0.834 49 H 0.161 0.839 50 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.794 -1.929 -14.220 16.330 hybrid contribution 1.496 0.716 -0.196 1.670 sum -6.298 -1.213 -14.416 15.778 Atomic orbital electron populations 1.21743 0.94706 1.02204 1.02063 1.21500 0.96437 0.94893 1.03061 1.20020 0.82859 0.99223 1.04546 1.25870 1.00269 1.00540 0.83676 1.74603 0.89456 1.21795 1.24040 1.85285 1.22289 1.65775 1.25044 1.28933 0.97156 0.94403 0.81932 1.20417 0.87637 1.00607 0.98424 1.21321 0.97943 0.93028 1.01432 1.21613 0.97515 0.95305 1.03168 1.20484 0.79996 0.91272 0.77209 1.90640 1.54135 1.46626 1.52680 1.47967 1.25411 1.06280 1.52201 1.19868 0.91556 0.84440 0.95392 1.21360 1.19133 1.18153 0.99623 0.90168 1.24860 0.96607 0.96494 0.94586 1.69881 1.41266 1.29245 1.12100 0.86969 0.83104 0.80864 0.79581 1.19735 1.20888 1.18820 1.19717 0.97205 0.83892 0.92038 1.23267 0.94837 0.99638 0.88878 1.21666 0.94256 1.06534 1.00145 1.21789 0.99629 1.05631 0.96610 1.23978 0.84383 1.05492 0.98074 1.84115 1.35392 1.59580 1.26993 1.71933 0.99738 1.20605 1.29200 0.92280 0.92534 0.92213 0.91667 0.91079 0.89264 0.88602 0.87770 0.86552 0.90256 0.90870 0.88976 0.86736 0.94721 0.94967 0.92257 0.86801 0.88936 0.83446 0.83860 0.78671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 3 C -0.03 -0.26 5.84 -27.88 -0.16 -0.43 16 4 C 0.17 2.22 7.47 -156.37 -1.17 1.05 16 5 N -0.39 -5.49 12.16 30.90 0.38 -5.12 16 6 O 0.07 1.00 11.31 18.10 0.20 1.20 16 7 C 0.20 2.53 7.77 -13.06 -0.10 2.43 16 8 C -0.03 -0.34 5.84 -27.88 -0.16 -0.51 16 9 C -0.10 -1.32 4.49 -26.73 -0.12 -1.44 16 10 C -0.14 -2.08 4.25 -27.88 -0.12 -2.19 16 11 C 0.52 9.87 7.67 -10.98 -0.08 9.79 16 12 O -0.56 -11.86 15.56 5.56 0.09 -11.77 16 13 N -0.59 -11.25 2.44 -176.43 -0.43 -11.68 16 14 C 0.21 4.22 4.03 -5.19 -0.02 4.20 16 15 C -0.54 -13.22 9.83 -34.44 -0.34 -13.56 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.89 -24.51 13.96 55.43 0.77 -23.74 16 19 Si 0.87 18.60 27.47 -169.99 -4.67 13.94 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.26 -5.36 6.54 56.52 0.37 -4.99 16 23 C 0.20 3.42 5.94 -5.19 -0.03 3.39 16 24 C -0.01 -0.24 6.90 -35.62 -0.25 -0.49 16 25 C -0.21 -3.18 10.81 -39.70 -0.43 -3.61 16 26 C -0.22 -2.93 10.91 -39.70 -0.43 -3.36 16 27 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 28 O -0.17 -2.82 10.65 5.73 0.06 -2.76 16 29 N -0.48 -6.81 11.55 -9.87 -0.11 -6.93 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.07 1.01 8.10 -51.92 -0.42 0.59 16 41 H 0.09 1.23 7.40 -51.93 -0.38 0.84 16 42 H 0.11 1.84 8.00 -51.93 -0.42 1.42 16 43 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 44 H 0.03 0.62 5.87 -51.93 -0.30 0.31 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.11 1.87 8.07 -51.93 -0.42 1.45 16 47 H 0.09 1.64 7.42 -51.92 -0.39 1.26 16 48 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 49 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 50 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 424.90 15.07 6.40 6.40 Total: -1.00 -31.73 424.90 -8.04 -39.77 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.78 Total: 5.70 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.95 Total: -5.02 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.60 Total: -47.46 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.35 Total: -13.33 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.67 Total: 13.94 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -31.73 -8.04 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069514334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.367 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds