Wall clock time and date at job start Tue Mar 31 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.29947 * 126.28954 * 90.02383 * 4 3 2 6 6 O 1.21296 * 110.25471 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.80899 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.55107 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46846 * 269.97485 * 8 7 6 10 10 C 1.52994 * 109.47064 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47105 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99759 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00204 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99997 * 359.97438 * 13 11 10 15 15 C 1.50695 * 109.46826 * 90.00735 * 14 13 11 16 16 H 1.08001 * 120.00341 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99710 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99964 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00045 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46714 * 90.00435 * 19 17 15 21 21 H 1.48497 * 109.47373 * 210.00167 * 19 17 15 22 22 H 1.48501 * 109.47147 * 330.00806 * 19 17 15 23 23 C 1.46497 * 120.00346 * 180.02562 * 13 11 10 24 24 C 1.50707 * 109.47445 * 89.99057 * 23 13 11 25 25 C 1.34514 * 125.78555 * 90.00385 * 24 23 13 26 26 C 1.41380 * 106.84009 * 180.02562 * 25 24 23 27 27 C 1.34517 * 106.83974 * 0.02562 * 26 25 24 28 28 O 1.34298 * 125.79271 * 269.69805 * 24 23 13 29 29 N 1.31124 * 106.89716 * 359.77126 * 7 6 5 30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 36 36 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 37 37 H 1.09004 * 109.46902 * 29.97089 * 8 7 6 38 38 H 1.08992 * 109.47575 * 149.97859 * 8 7 6 39 39 H 1.08999 * 109.47035 * 299.99997 * 9 8 7 40 40 H 1.09008 * 109.47095 * 59.99950 * 9 8 7 41 41 H 1.08999 * 109.47356 * 300.00001 * 10 9 8 42 42 H 1.08996 * 109.47393 * 59.99904 * 10 9 8 43 43 H 1.08995 * 109.47160 * 210.00664 * 14 13 11 44 44 H 1.09004 * 109.46925 * 330.00219 * 14 13 11 45 45 H 0.96996 * 120.00692 * 179.97438 * 18 17 15 46 46 H 1.08998 * 109.47413 * 209.99432 * 23 13 11 47 47 H 1.09007 * 109.46798 * 329.99472 * 23 13 11 48 48 H 1.08002 * 126.58178 * 0.03489 * 25 24 23 49 49 H 1.07996 * 126.58182 * 179.97438 * 26 25 24 50 50 H 1.07998 * 125.78851 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 7 4.3164 1.4430 -1.0465 6 8 5.4821 1.4434 -0.7109 7 6 5.5695 1.4440 0.6227 8 6 6.8362 1.4453 1.4391 9 6 7.2655 0.0031 1.7164 10 6 8.5519 0.0043 2.5447 11 6 8.9751 -1.4161 2.8173 12 8 8.3128 -2.3385 2.3915 13 7 10.0891 -1.6614 3.5352 14 6 10.8889 -0.5471 4.0501 15 6 10.3936 -0.1647 5.4210 16 1 9.5656 -0.6980 5.8643 17 6 10.9969 0.8667 6.1090 18 7 10.5644 1.2008 7.3052 19 14 12.4285 1.7896 5.3420 20 1 11.9127 2.9428 4.5615 21 1 13.3315 2.2813 6.4135 22 1 13.1792 0.8783 4.4413 23 6 10.5008 -3.0422 3.7998 24 6 11.4117 -3.5151 2.6962 25 6 12.7515 -3.3974 2.6775 26 6 13.1960 -3.9699 1.4635 27 6 12.1011 -4.4026 0.8128 28 8 11.0239 -4.1306 1.5673 29 7 4.3425 1.4489 1.0850 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6764 1.9564 0.8900 37 1 7.6235 1.9590 0.8873 38 1 6.6593 1.9596 2.3836 39 1 6.4782 -0.5106 2.2681 40 1 7.4425 -0.5113 0.7718 41 1 9.3390 0.5180 1.9927 42 1 8.3754 0.5189 3.4892 43 1 11.9344 -0.8487 4.1126 44 1 10.7966 0.3069 3.3790 45 1 10.9889 1.9262 7.7894 46 1 11.0296 -3.0876 4.7519 47 1 9.6195 -3.6822 3.8428 48 1 13.3693 -2.9514 3.4429 49 1 14.2183 -4.0446 1.1235 50 1 12.0907 -4.8914 -0.1501 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069514334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:54 Heat of formation + Delta-G solvation = 8.815392 kcal Electronic energy + Delta-G solvation = -31686.941640 eV Core-core repulsion = 27297.106411 eV Total energy + Delta-G solvation = -4389.835229 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.65049 -43.45058 -40.81505 -37.63738 -37.10708 -36.56716 -35.13580 -34.60361 -33.86196 -33.18888 -31.94901 -29.71935 -29.35340 -28.83085 -26.80697 -24.92774 -24.48224 -23.70658 -22.83030 -22.58249 -21.76293 -21.48300 -19.98522 -19.11243 -19.09935 -18.53104 -18.21130 -17.84423 -17.40665 -16.84803 -16.58810 -16.32676 -16.04299 -15.85755 -15.71214 -15.28370 -14.99868 -14.65241 -14.50982 -14.28868 -13.97566 -13.83659 -13.67993 -13.65834 -13.51666 -13.48266 -13.14896 -13.06561 -12.91499 -12.78425 -12.68079 -12.52467 -12.48712 -12.27406 -12.11965 -12.04281 -12.01671 -11.75189 -11.69592 -11.64427 -10.94591 -10.86768 -10.76978 -10.69345 -9.62251 -9.38318 -8.23493 -6.31446 0.06925 0.74940 1.14323 1.46267 1.49344 1.57509 1.67466 1.70867 1.78252 2.18150 2.40408 2.44733 2.63396 2.99896 3.10902 3.61262 3.75216 3.84800 3.96493 3.96972 4.04824 4.07879 4.10887 4.17980 4.25592 4.34960 4.47118 4.51774 4.57541 4.59487 4.61906 4.69257 4.71122 4.76616 4.83622 4.87170 4.91946 4.92572 4.98409 5.04762 5.12308 5.15905 5.17594 5.21066 5.26794 5.34488 5.48404 5.60235 5.66180 6.21351 6.27871 6.60021 6.75821 7.10304 7.25039 7.37296 8.92403 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.008099 B = 0.002442 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.540031 B =11465.485314 C =13635.603218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.028 4.028 4 C 0.166 3.834 5 N -0.408 5.408 6 O 0.068 5.932 7 C 0.198 3.802 8 C -0.024 4.024 9 C -0.086 4.086 10 C -0.131 4.131 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.593 5.593 14 C 0.218 3.782 15 C -0.538 4.538 16 H 0.033 0.967 17 C 0.023 3.977 18 N -0.942 5.942 19 Si 0.936 3.064 20 H -0.255 1.255 21 H -0.292 1.292 22 H -0.239 1.239 23 C 0.194 3.806 24 C -0.043 4.043 25 C -0.204 4.204 26 C -0.221 4.221 27 C -0.046 4.046 28 O -0.193 6.193 29 N -0.507 5.507 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.267 0.733 46 H 0.117 0.883 47 H 0.078 0.922 48 H 0.155 0.845 49 H 0.174 0.826 50 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 -0.576 -16.084 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.067 4.067 4 C -0.107 4.107 5 N -0.118 5.118 6 O 0.013 5.987 7 C -0.022 4.022 8 C -0.063 4.063 9 C -0.126 4.126 10 C -0.170 4.170 11 C 0.301 3.699 12 O -0.471 6.471 13 N -0.323 5.323 14 C 0.096 3.904 15 C -0.576 4.576 16 H 0.051 0.949 17 C -0.176 4.176 18 N -0.582 5.582 19 Si 0.758 3.242 20 H -0.180 1.180 21 H -0.219 1.219 22 H -0.163 1.163 23 C 0.071 3.929 24 C -0.094 4.094 25 C -0.224 4.224 26 C -0.240 4.240 27 C -0.113 4.113 28 O -0.089 6.089 29 N -0.241 5.241 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.157 0.843 38 H 0.143 0.857 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.139 0.861 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.135 0.865 47 H 0.096 0.904 48 H 0.173 0.827 49 H 0.192 0.808 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.133 -0.970 -16.720 17.836 hybrid contribution 0.943 0.265 0.606 1.152 sum -5.190 -0.705 -16.114 16.944 Atomic orbital electron populations 1.21717 0.92768 1.02754 1.02986 1.21458 0.98047 0.94251 1.01771 1.20226 0.80797 0.99794 1.05845 1.26496 1.01634 0.99437 0.83154 1.74586 0.89739 1.22894 1.24625 1.85256 1.22229 1.65990 1.25255 1.29287 0.97513 0.93480 0.81888 1.20485 0.87736 0.98956 0.99093 1.21142 0.96369 0.94639 1.00420 1.21633 0.99087 0.92882 1.03389 1.21181 0.79499 0.92582 0.76616 1.90619 1.54769 1.47921 1.53841 1.48049 1.25571 1.06661 1.52008 1.19710 0.91736 0.85507 0.93405 1.21470 1.17502 1.17298 1.01372 0.94868 1.25724 0.99570 0.97518 0.94792 1.70048 1.43428 1.30454 1.14222 0.85892 0.79308 0.80109 0.78849 1.17980 1.21853 1.16253 1.19665 0.97039 0.83175 0.93064 1.23005 0.95165 1.01917 0.89351 1.21919 0.93659 1.05767 1.01028 1.22150 1.01156 1.05081 0.95639 1.24856 0.83448 1.04233 0.98757 1.84092 1.37199 1.60146 1.27462 1.71954 1.00548 1.21559 1.30009 0.91596 0.91355 0.91883 0.92582 0.92750 0.87617 0.87566 0.84312 0.85744 0.92770 0.91250 0.86061 0.87570 0.93793 0.92617 0.92348 0.86544 0.90375 0.82692 0.80838 0.74800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.12 -2.03 5.92 30.60 0.18 -1.85 16 3 C -0.03 -0.51 5.84 29.85 0.17 -0.33 16 4 C 0.17 4.29 7.47 138.46 1.03 5.33 16 5 N -0.41 -11.32 12.16 -60.32 -0.73 -12.06 16 6 O 0.07 1.81 11.31 74.82 0.85 2.65 16 7 C 0.20 4.99 7.77 88.38 0.69 5.68 16 8 C -0.02 -0.48 5.84 29.85 0.17 -0.31 16 9 C -0.09 -2.28 4.49 30.59 0.14 -2.14 16 10 C -0.13 -3.85 4.25 29.85 0.13 -3.72 16 11 C 0.51 19.49 7.67 87.66 0.67 20.16 16 12 O -0.59 -25.65 15.56 -3.03 -0.05 -25.70 16 13 N -0.59 -22.73 2.44 -830.48 -2.03 -24.76 16 14 C 0.22 8.54 4.03 85.63 0.35 8.89 16 15 C -0.54 -26.46 9.83 25.60 0.25 -26.21 16 16 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 17 C 0.02 1.17 5.47 84.66 0.46 1.63 16 18 N -0.94 -53.30 13.96 21.45 0.30 -53.00 16 19 Si 0.94 36.96 27.47 68.60 1.88 38.84 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.24 -8.46 6.54 99.48 0.65 -7.81 16 23 C 0.19 6.97 5.94 85.64 0.51 7.48 16 24 C -0.04 -1.44 6.90 24.83 0.17 -1.27 16 25 C -0.20 -5.90 10.81 22.19 0.24 -5.66 16 26 C -0.22 -5.28 10.91 22.19 0.24 -5.03 16 27 C -0.05 -1.10 12.09 66.97 0.81 -0.29 16 28 O -0.19 -6.41 10.65 -2.41 -0.03 -6.43 16 29 N -0.51 -14.27 11.55 -303.19 -3.50 -17.78 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.14 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 40 H 0.07 1.89 8.10 -2.38 -0.02 1.87 16 41 H 0.12 2.86 7.40 -2.39 -0.02 2.84 16 42 H 0.11 3.36 8.00 -2.39 -0.02 3.34 16 43 H 0.04 1.67 7.13 -2.39 -0.02 1.66 16 44 H 0.06 1.96 5.87 -2.38 -0.01 1.94 16 45 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.12 3.97 8.07 -2.39 -0.02 3.95 16 47 H 0.08 2.96 7.42 -2.38 -0.02 2.94 16 48 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 49 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 50 H 0.24 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -71.61 424.90 4.51 -67.11 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.88 Total: 29.83 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.93 Total: 1.29 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -5.96 Total: -107.59 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: 0.77 Total: -29.48 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 1.88 Total: 38.84 kcal Total: -71.61 4.51 -67.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069514334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.921 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds