Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00304 * 2 1 4 4 C 1.50701 * 109.47497 * 89.99939 * 3 2 1 5 5 H 1.07997 * 119.99307 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00286 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99799 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00066 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47040 * 89.99544 * 8 6 4 10 10 H 1.48499 * 109.47110 * 209.99946 * 8 6 4 11 11 H 1.48497 * 109.46926 * 330.00084 * 8 6 4 12 12 C 1.34784 * 119.99609 * 180.27586 * 2 1 3 13 13 O 1.21276 * 119.99569 * 179.72592 * 12 2 1 14 14 C 1.50695 * 120.00000 * 359.72470 * 12 2 1 15 15 N 1.46904 * 109.46782 * 180.02562 * 14 12 2 16 16 C 1.46953 * 110.99995 * 293.79800 * 15 14 12 17 17 C 1.53047 * 109.36581 * 176.81516 * 16 15 14 18 18 N 1.46953 * 109.36892 * 58.39568 * 17 16 15 19 19 C 1.46898 * 111.00639 * 176.80961 * 18 17 16 20 20 C 1.53005 * 109.46430 * 47.79957 * 19 18 17 21 21 H 1.08995 * 109.47186 * 306.09931 * 20 19 18 22 22 O 1.42898 * 109.47096 * 66.10171 * 20 19 18 23 23 C 1.50706 * 109.46962 * 186.10108 * 20 19 18 24 24 C 1.38237 * 119.99736 * 279.72710 * 23 20 19 25 25 C 1.38231 * 119.99536 * 179.78602 * 24 23 20 26 26 C 1.38231 * 120.00392 * 0.44052 * 25 24 23 27 27 C 1.38237 * 119.99939 * 359.81581 * 26 25 24 28 28 C 1.38232 * 119.99895 * 359.97285 * 27 26 25 29 29 C 1.46953 * 110.88195 * 300.68497 * 18 17 16 30 30 C 1.46961 * 110.99832 * 169.99993 * 15 14 12 31 31 H 1.09002 * 109.46882 * 89.99920 * 1 2 3 32 32 H 1.08994 * 109.47351 * 210.00039 * 1 2 3 33 33 H 1.08999 * 109.47135 * 330.00294 * 1 2 3 34 34 H 1.09003 * 109.47018 * 210.00438 * 3 2 1 35 35 H 1.09001 * 109.46774 * 329.99979 * 3 2 1 36 36 H 0.97001 * 119.99555 * 180.02562 * 7 6 4 37 37 H 1.09006 * 109.47260 * 299.99501 * 14 12 2 38 38 H 1.08997 * 109.47649 * 60.00352 * 14 12 2 39 39 H 1.09004 * 109.48981 * 296.78080 * 16 15 14 40 40 H 1.09000 * 109.49089 * 56.84179 * 16 15 14 41 41 H 1.09000 * 109.48655 * 298.43009 * 17 16 15 42 42 H 1.09005 * 109.49295 * 178.36899 * 17 16 15 43 43 H 1.08995 * 109.47340 * 167.79356 * 19 18 17 44 44 H 1.09004 * 109.47485 * 287.80408 * 19 18 17 45 45 H 0.96701 * 114.00315 * 60.00193 * 22 20 19 46 46 H 1.08004 * 120.00162 * 359.97438 * 24 23 20 47 47 H 1.08001 * 120.00075 * 180.27219 * 25 24 23 48 48 H 1.08002 * 120.00361 * 179.82834 * 26 25 24 49 49 H 1.07994 * 120.00040 * 180.02562 * 27 26 25 50 50 H 1.08000 * 119.99894 * 180.02562 * 28 27 26 51 51 H 1.08991 * 109.48969 * 299.35147 * 29 18 17 52 52 H 1.09008 * 109.48864 * 179.27838 * 29 18 17 53 53 H 1.09001 * 109.48919 * 303.15204 * 30 15 14 54 54 H 1.08994 * 109.48781 * 63.19855 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0975 1.0962 2.2416 6 6 3.1261 2.8779 1.6727 7 7 3.5535 3.6180 0.6730 8 14 3.4369 3.4175 3.4338 9 1 4.7319 2.8607 3.9010 10 1 3.4843 4.9005 3.4961 11 1 2.3415 2.9203 4.3045 12 6 2.1389 -1.1673 -0.0056 13 8 3.3516 -1.1673 -0.0106 14 6 1.3853 -2.4723 -0.0056 15 7 2.3399 -3.5889 -0.0117 16 6 3.0982 -3.6267 -1.2699 17 6 4.1339 -4.7516 -1.2047 18 7 3.4501 -6.0304 -0.9666 19 6 4.4046 -7.1470 -0.9727 20 6 5.6058 -6.7958 -0.0925 21 1 6.0260 -5.8431 -0.4145 22 8 5.1850 -6.6948 1.2694 23 6 6.6517 -7.8737 -0.2165 24 6 6.5211 -9.0490 0.4995 25 6 7.4782 -10.0395 0.3823 26 6 8.5704 -9.8511 -0.4437 27 6 8.7037 -8.6737 -1.1556 28 6 7.7444 -7.6849 -1.0419 29 6 2.6919 -5.9926 0.2917 30 6 1.6560 -4.8677 0.2264 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.1499 1.1382 -0.5139 35 1 1.6085 2.0283 -0.5139 36 1 4.0304 4.4439 0.8503 37 1 0.7624 -2.5322 0.8869 38 1 0.7550 -2.5280 -0.8931 39 1 2.4159 -3.8083 -2.1004 40 1 3.6055 -2.6733 -1.4176 41 1 4.8326 -4.5559 -0.3913 42 1 4.6779 -4.8002 -2.1480 43 1 3.9190 -8.0422 -0.5844 44 1 4.7428 -7.3304 -1.9926 45 1 4.7999 -7.5081 1.6235 46 1 5.6699 -9.1946 1.1480 47 1 7.3740 -10.9596 0.9383 48 1 9.3196 -10.6239 -0.5332 49 1 9.5567 -8.5267 -1.8013 50 1 7.8483 -6.7652 -1.5984 51 1 3.3741 -5.8109 1.1220 52 1 2.1844 -6.9460 0.4392 53 1 1.1121 -4.8191 1.1697 54 1 0.9571 -5.0632 -0.5869 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069625468.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = -54.143790 kcal Electronic energy + Delta-G solvation = -32825.023986 eV Core-core repulsion = 28568.291736 eV Total energy + Delta-G solvation = -4256.732250 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.28575 -40.68210 -39.63452 -37.94802 -36.54421 -35.73482 -34.70810 -32.83205 -31.82877 -31.77484 -30.99672 -29.66657 -27.98958 -27.16735 -25.92097 -24.75790 -24.24488 -23.54399 -23.32249 -22.07788 -20.55646 -19.98758 -18.69058 -18.66253 -17.90454 -17.36424 -17.06715 -17.03977 -16.58259 -16.44483 -16.34043 -16.08507 -15.87725 -15.62260 -15.39525 -15.10607 -14.92423 -14.73920 -14.41301 -14.24926 -14.03573 -13.83465 -13.73775 -13.57619 -13.43192 -13.13683 -13.10885 -12.87075 -12.76578 -12.72405 -12.56591 -12.48970 -12.26884 -12.19509 -12.09078 -11.91612 -11.80659 -11.72690 -11.65437 -11.29220 -10.65121 -10.47015 -9.85543 -9.79978 -9.40134 -9.22805 -8.99005 -8.22231 -6.36855 0.37389 0.46721 1.35274 1.39133 1.48394 1.89039 2.26997 2.41556 2.80377 2.92712 3.03574 3.06938 3.47451 3.58332 3.76324 3.86344 3.94957 4.03383 4.07698 4.17376 4.20161 4.25917 4.26983 4.29770 4.35737 4.44068 4.55428 4.58714 4.59398 4.63381 4.65055 4.73773 4.82822 4.87983 4.93171 4.96381 4.96470 5.00556 5.04290 5.09307 5.12613 5.23113 5.27360 5.52653 5.57492 5.59745 5.61982 5.83582 5.91502 5.96054 6.07152 6.07380 6.16978 6.22621 6.71463 6.72156 6.84141 7.29448 7.56108 8.84564 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.001990 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.178156 B =14068.410069 C =15216.423792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.261 3.739 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.261 1.261 12 C 0.494 3.506 13 O -0.579 6.579 14 C 0.055 3.945 15 N -0.544 5.544 16 C 0.061 3.939 17 C 0.063 3.937 18 N -0.530 5.530 19 C 0.039 3.961 20 C 0.116 3.884 21 H 0.088 0.912 22 O -0.562 6.562 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.130 4.130 29 C 0.044 3.956 30 C 0.059 3.941 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.065 0.935 34 H -0.004 1.004 35 H 0.023 0.977 36 H 0.267 0.733 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.384 0.616 46 H 0.139 0.861 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.121 0.879 51 H 0.059 0.941 52 H 0.101 0.899 53 H 0.092 0.908 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -31.435 -3.548 31.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.347 5.347 3 C 0.140 3.860 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.185 1.185 12 C 0.282 3.718 13 O -0.459 6.459 14 C -0.076 4.076 15 N -0.269 5.269 16 C -0.067 4.067 17 C -0.066 4.066 18 N -0.253 5.253 19 C -0.089 4.089 20 C 0.055 3.945 21 H 0.106 0.894 22 O -0.370 6.370 23 C -0.123 4.123 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.145 4.145 28 C -0.148 4.148 29 C -0.083 4.083 30 C -0.068 4.068 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.014 0.986 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.106 0.894 45 H 0.234 0.766 46 H 0.157 0.843 47 H 0.162 0.838 48 H 0.159 0.841 49 H 0.154 0.846 50 H 0.139 0.861 51 H 0.077 0.923 52 H 0.119 0.881 53 H 0.111 0.889 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.678 -30.648 -3.677 30.875 hybrid contribution 0.540 0.645 0.591 1.028 sum -0.138 -30.003 -3.086 30.162 Atomic orbital electron populations 1.21916 0.77937 1.03995 1.02441 1.48200 1.08371 1.06301 1.71797 1.18706 0.91004 0.80427 0.95899 1.21706 1.36675 1.06385 0.93099 0.92960 1.25877 0.94990 0.96488 1.02004 1.70056 1.38979 1.14849 1.32979 0.85420 0.78602 0.77557 0.79256 1.20858 1.19808 1.18517 1.21256 0.88036 0.86281 0.76208 1.90607 1.16404 1.87691 1.51185 1.21922 0.93650 0.87521 1.04473 1.61704 1.26360 1.03215 1.35639 1.22120 0.96186 0.98739 0.89657 1.22052 0.95274 0.88705 1.00523 1.62520 1.25347 1.02719 1.34721 1.22885 0.90903 0.94517 1.00641 1.21552 0.93166 0.96877 0.82877 0.89430 1.86712 1.82619 1.41010 1.26644 1.20574 0.96819 0.96464 0.98487 1.21127 1.00296 0.92888 0.99333 1.21458 0.94187 0.99706 0.98761 1.21516 0.98638 0.97831 0.96696 1.21417 0.99233 0.93931 0.99963 1.21220 0.94440 0.99884 0.99263 1.22475 0.95954 0.98616 0.91289 1.22280 0.95632 0.87151 1.01770 0.91288 0.88824 0.91581 0.98637 0.95937 0.92445 0.86017 0.89938 0.94162 0.92107 0.95213 0.89905 0.88298 0.89418 0.76593 0.84319 0.83800 0.84082 0.84598 0.86087 0.92318 0.88120 0.88943 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.24 127.77 1.31 3.69 16 2 N -0.61 -26.78 2.86 -851.15 -2.43 -29.21 16 3 C 0.26 14.55 5.16 85.63 0.44 14.99 16 4 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.30 5.46 84.65 0.46 0.77 16 7 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 8 Si 0.97 46.25 29.54 68.60 2.03 48.28 16 9 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.49 21.28 7.37 87.65 0.65 21.93 16 13 O -0.58 -31.19 13.91 -3.02 -0.04 -31.24 16 14 C 0.05 1.62 4.00 85.55 0.34 1.96 16 15 N -0.54 -16.42 4.45 -900.28 -4.00 -20.43 16 16 C 0.06 1.90 5.26 86.31 0.45 2.36 16 17 C 0.06 1.67 4.73 86.31 0.41 2.08 16 18 N -0.53 -10.90 4.92 -895.73 -4.40 -15.30 16 19 C 0.04 0.61 5.27 86.31 0.45 1.07 16 20 C 0.12 2.16 2.67 29.85 0.08 2.24 16 21 H 0.09 2.09 5.86 -2.39 -0.01 2.08 16 22 O -0.56 -11.33 10.37 -148.98 -1.54 -12.88 16 23 C -0.12 -2.08 4.97 -19.86 -0.10 -2.18 16 24 C -0.12 -1.60 9.32 22.27 0.21 -1.39 16 25 C -0.12 -1.51 10.05 22.27 0.22 -1.28 16 26 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 27 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 28 C -0.13 -2.28 9.67 22.27 0.22 -2.06 16 29 C 0.04 0.86 5.19 86.31 0.45 1.31 16 30 C 0.06 1.26 5.61 86.31 0.48 1.74 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 2.09 6.45 -2.39 -0.02 2.07 16 33 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 34 H 0.00 -0.29 7.41 -2.39 -0.02 -0.31 16 35 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.12 2.98 7.29 -2.38 -0.02 2.96 16 38 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 39 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 2.41 5.85 -2.39 -0.01 2.39 16 41 H 0.03 0.95 6.28 -2.39 -0.01 0.94 16 42 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.10 1.15 7.91 -2.39 -0.02 1.13 16 44 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 45 H 0.38 4.52 7.50 -74.06 -0.56 3.97 16 46 H 0.14 1.18 6.78 -2.91 -0.02 1.16 16 47 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 48 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 50 H 0.12 2.03 8.04 -2.91 -0.02 2.01 16 51 H 0.06 1.38 5.64 -2.39 -0.01 1.36 16 52 H 0.10 1.35 8.02 -2.38 -0.02 1.33 16 53 H 0.09 1.68 8.07 -2.39 -0.02 1.66 16 54 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -81.95 421.42 -3.01 -84.96 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.34 Total: 20.83 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.76 Total: 12.26 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -10.55 Total: -122.22 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -1.59 Total: -44.12 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -81.95 -3.01 -84.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069625468.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.813 kcal (2) G-P(sol) polarization free energy of solvation -81.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds