Wall clock time and date at job start Tue Mar 31 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47544 * 2 1 4 4 N 1.46505 * 109.47123 * 119.99870 * 2 1 3 5 5 C 1.46496 * 119.99896 * 299.99932 * 4 2 1 6 6 C 1.50705 * 109.47066 * 269.99622 * 5 4 2 7 7 H 1.08001 * 119.99987 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00059 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00144 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47074 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47142 * 119.99717 * 10 8 6 13 13 H 1.48503 * 109.47199 * 240.00337 * 10 8 6 14 14 C 1.34777 * 119.99832 * 119.99467 * 4 2 1 15 15 O 1.21278 * 119.99854 * 179.97438 * 14 4 2 16 16 C 1.50703 * 120.00161 * 0.02562 * 14 4 2 17 17 C 1.53000 * 109.46912 * 179.97438 * 16 14 4 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 14 19 19 O 1.21300 * 120.00069 * 359.97438 * 18 17 16 20 20 C 1.46863 * 120.00056 * 180.02562 * 18 17 16 21 21 C 1.40010 * 120.12427 * 359.73061 * 20 18 17 22 22 C 1.37600 * 119.93643 * 179.75586 * 21 20 18 23 23 C 1.39098 * 120.30834 * 0.58488 * 22 21 20 24 24 C 1.39357 * 120.08531 * 359.60912 * 23 22 21 25 25 C 1.38177 * 119.98656 * 0.12082 * 24 23 22 26 26 O 1.36147 * 120.75375 * 180.27139 * 24 23 22 27 27 C 1.43173 * 116.70863 * 342.86760 * 26 24 23 28 28 C 1.53460 * 108.23649 * 46.13290 * 27 26 24 29 29 O 1.35923 * 119.21730 * 179.51792 * 23 22 21 30 30 H 1.09000 * 109.46993 * 300.00067 * 1 2 3 31 31 H 1.09000 * 109.46852 * 59.99734 * 1 2 3 32 32 H 1.08993 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46993 * 239.99932 * 2 1 3 34 34 H 1.08996 * 109.47415 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46614 * 299.99740 * 3 2 1 36 36 H 1.08997 * 109.47486 * 59.99749 * 3 2 1 37 37 H 1.08998 * 109.47205 * 29.99486 * 5 4 2 38 38 H 1.08997 * 109.47416 * 150.00347 * 5 4 2 39 39 H 0.97001 * 120.00292 * 180.02562 * 9 8 6 40 40 H 1.09001 * 109.46980 * 59.99654 * 16 14 4 41 41 H 1.08992 * 109.47158 * 299.99760 * 16 14 4 42 42 H 1.09002 * 109.47398 * 300.00078 * 17 16 14 43 43 H 1.09001 * 109.47194 * 60.00258 * 17 16 14 44 44 H 1.08004 * 120.03291 * 0.02562 * 21 20 18 45 45 H 1.08000 * 119.84693 * 180.29143 * 22 21 20 46 46 H 1.07999 * 120.03103 * 179.97438 * 25 24 23 47 47 H 1.08992 * 109.71402 * 165.82520 * 27 26 24 48 48 H 1.09003 * 109.70443 * 286.45102 * 27 26 24 49 49 H 1.09005 * 109.70284 * 59.85743 * 28 27 26 50 50 H 1.08995 * 109.70840 * 180.47757 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5267 6 6 2.7033 0.8018 2.9830 7 1 3.5429 1.0362 2.3454 8 6 2.5813 1.4109 4.2139 9 7 1.5586 1.1258 4.9901 10 14 3.8685 2.6409 4.7791 11 1 4.9094 2.7854 3.7299 12 1 3.2237 3.9566 5.0204 13 1 4.4956 2.1589 6.0360 14 6 2.7931 -1.7865 1.0725 15 8 3.1977 -2.3579 2.0628 16 6 3.1575 -2.3011 -0.2962 17 6 4.0375 -3.5448 -0.1557 18 6 4.4014 -4.0598 -1.5245 19 8 3.9964 -3.4886 -2.5149 20 6 5.2456 -5.2540 -1.6592 21 6 5.7183 -5.9128 -0.5178 22 6 6.5048 -7.0343 -0.6485 23 6 6.8434 -7.5110 -1.9106 24 6 6.3801 -6.8583 -3.0514 25 6 5.5852 -5.7347 -2.9293 26 8 6.6986 -7.3163 -4.2933 27 6 7.8003 -8.2266 -4.3804 28 6 7.6382 -9.2835 -3.2797 29 8 7.6297 -8.6149 -2.0139 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6768 1.9564 0.8899 37 1 0.6905 0.2975 2.4843 38 1 1.6238 -1.0225 3.2292 39 1 1.4726 1.5546 5.8559 40 1 3.7028 -1.5303 -0.8409 41 1 2.2494 -2.5578 -0.8415 42 1 4.9457 -3.2877 0.3895 43 1 3.4926 -4.3158 0.3891 44 1 5.4623 -5.5436 0.4644 45 1 6.8648 -7.5441 0.2330 46 1 5.2260 -5.2281 -3.8128 47 1 7.8013 -8.7102 -5.3572 48 1 8.7359 -7.6862 -4.2362 49 1 6.6986 -9.8183 -3.4193 50 1 8.4708 -9.9858 -3.3190 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069656265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:44 Heat of formation + Delta-G solvation = -124.423362 kcal Electronic energy + Delta-G solvation = -31860.844120 eV Core-core repulsion = 27432.938473 eV Total energy + Delta-G solvation = -4427.905646 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69755 -39.96695 -38.99406 -37.72652 -37.50044 -35.95518 -33.08981 -32.58717 -31.67328 -31.10527 -30.77208 -29.31229 -27.67624 -26.68071 -25.84271 -25.09882 -23.24389 -22.45612 -21.95067 -21.08325 -19.82122 -19.02036 -17.96009 -17.67911 -17.62328 -16.63768 -16.44338 -16.01287 -15.86308 -15.64629 -15.40858 -14.98959 -14.90176 -14.85998 -14.33828 -14.24896 -14.14600 -13.93942 -13.66868 -13.42550 -13.09689 -12.90754 -12.83959 -12.33194 -12.29552 -12.08261 -11.79394 -11.59686 -11.55943 -11.52014 -11.50565 -11.12709 -11.01313 -10.93603 -10.83917 -10.77641 -10.52792 -10.30932 -9.97908 -9.80421 -9.48784 -9.06980 -8.84130 -8.50933 -8.39206 -7.59692 -6.00304 -4.03187 0.34030 0.94889 2.15567 2.55716 2.71610 3.31415 3.38907 3.41717 3.42291 3.49358 3.68624 3.76048 4.13717 4.15396 4.29134 4.38439 4.48114 4.63558 4.77063 4.81593 4.91893 4.97501 4.99691 5.16764 5.26130 5.30072 5.34583 5.36970 5.50708 5.63185 5.71096 5.72245 5.74881 5.85433 5.97019 6.02551 6.08202 6.11945 6.15241 6.22690 6.34220 6.41887 6.42612 6.66076 6.93599 7.01192 7.16282 7.43349 7.51635 7.62499 7.96991 8.29651 8.50437 8.95697 9.14777 9.60860 11.07820 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.001884 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.437386 B =14857.679775 C =15797.247802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.157 4.157 4 N -0.592 5.592 5 C 0.245 3.755 6 C -0.516 4.516 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.505 3.495 15 O -0.546 6.546 16 C -0.132 4.132 17 C -0.148 4.148 18 C 0.401 3.599 19 O -0.454 6.454 20 C -0.165 4.165 21 C -0.061 4.061 22 C -0.127 4.127 23 C 0.080 3.920 24 C 0.033 3.967 25 C -0.054 4.054 26 O -0.306 6.306 27 C 0.020 3.980 28 C 0.019 3.981 29 O -0.304 6.304 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.041 0.959 39 H 0.261 0.739 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.123 0.877 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 -18.744 -19.225 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.214 4.214 4 N -0.323 5.323 5 C 0.126 3.874 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.292 3.708 15 O -0.425 6.425 16 C -0.173 4.173 17 C -0.186 4.186 18 C 0.280 3.720 19 O -0.329 6.329 20 C -0.166 4.166 21 C -0.080 4.080 22 C -0.145 4.145 23 C 0.034 3.966 24 C -0.012 4.012 25 C -0.073 4.073 26 O -0.221 6.221 27 C -0.056 4.056 28 C -0.056 4.056 29 O -0.218 6.218 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.167 0.833 45 H 0.161 0.839 46 H 0.164 0.836 47 H 0.141 0.859 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.144 -18.723 -19.073 28.248 hybrid contribution 0.889 0.516 0.264 1.061 sum 10.033 -18.208 -18.809 28.035 Atomic orbital electron populations 1.22150 0.95652 1.01754 1.02387 1.21029 0.94082 0.94185 0.88070 1.22132 1.01345 0.95741 1.02230 1.48320 1.49019 1.26362 1.08640 1.19238 0.95882 0.94978 0.77333 1.21482 1.08842 1.23194 1.01977 0.92334 1.24931 0.95758 0.97174 0.96418 1.69941 1.29522 1.43382 1.10676 0.86503 0.81688 0.80843 0.78744 1.19841 1.21097 1.20995 1.20278 0.79184 0.81019 0.90365 1.90654 1.53679 1.58376 1.39786 1.21497 1.01167 0.97861 0.96732 1.21767 1.02753 0.99056 0.94989 1.22445 0.76394 0.81877 0.91333 1.90526 1.45836 1.55330 1.41213 1.20293 1.03690 0.99637 0.92965 1.21374 0.94323 0.93254 0.99019 1.20443 1.00727 0.98452 0.94903 1.19271 0.95212 0.88300 0.93821 1.18724 1.02448 0.96416 0.83609 1.20641 0.96078 0.92277 0.98310 1.86354 1.49558 1.61156 1.24994 1.23650 0.89466 0.91131 1.01336 1.23692 1.04950 0.94698 0.82305 1.86287 1.62405 1.38573 1.34518 0.91370 0.92292 0.92943 0.90431 0.92774 0.93291 0.90130 0.94828 0.94076 0.92908 0.88956 0.89100 0.87258 0.87372 0.83278 0.83932 0.83648 0.85861 0.90326 0.90174 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.17 37.16 0.34 -2.09 16 2 C 0.13 2.19 3.17 -67.93 -0.22 1.97 16 3 C -0.16 -2.65 8.47 37.16 0.31 -2.33 16 4 N -0.59 -12.37 2.39 -167.47 -0.40 -12.77 16 5 C 0.24 6.28 4.59 -5.19 -0.02 6.25 16 6 C -0.52 -14.27 7.83 -34.44 -0.27 -14.54 16 7 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.50 10.22 7.67 -10.98 -0.08 10.13 16 15 O -0.55 -13.08 15.56 5.56 0.09 -12.99 16 16 C -0.13 -2.00 3.30 -27.88 -0.09 -2.09 16 17 C -0.15 -1.92 3.59 -27.88 -0.10 -2.02 16 18 C 0.40 5.03 7.11 -30.82 -0.22 4.81 16 19 O -0.45 -6.70 15.97 5.54 0.09 -6.61 16 20 C -0.16 -1.84 5.87 -105.09 -0.62 -2.46 16 21 C -0.06 -0.59 9.46 -39.15 -0.37 -0.96 16 22 C -0.13 -1.18 9.94 -39.50 -0.39 -1.57 16 23 C 0.08 0.80 6.51 -38.85 -0.25 0.55 16 24 C 0.03 0.35 6.48 -39.19 -0.25 0.09 16 25 C -0.05 -0.62 9.50 -38.95 -0.37 -0.99 16 26 O -0.31 -2.94 10.41 -32.94 -0.34 -3.28 16 27 C 0.02 0.11 7.26 37.40 0.27 0.38 16 28 C 0.02 0.10 7.25 37.40 0.27 0.37 16 29 O -0.30 -2.69 10.40 -32.24 -0.34 -3.02 16 30 H 0.07 1.16 6.66 -51.93 -0.35 0.81 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.12 5.77 -51.93 -0.30 0.82 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 37 H 0.03 0.88 6.43 -51.93 -0.33 0.54 16 38 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 40 H 0.09 1.35 7.75 -51.93 -0.40 0.94 16 41 H 0.09 1.26 7.74 -51.93 -0.40 0.85 16 42 H 0.11 1.40 8.03 -51.93 -0.42 0.98 16 43 H 0.11 1.32 8.05 -51.93 -0.42 0.90 16 44 H 0.15 1.21 7.04 -52.48 -0.37 0.84 16 45 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.15 1.65 7.64 -52.49 -0.40 1.25 16 47 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 410.09 15.07 6.18 6.18 Total: -1.00 -34.92 410.09 -8.64 -43.56 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.47 Total: 0.75 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.16 Total: -2.93 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.34 Total: -38.44 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.50 Total: -25.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.92 -8.64 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.864 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds