Wall clock time and date at job start Tue Mar 31 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47544 * 2 1 4 4 N 1.46505 * 109.47123 * 119.99870 * 2 1 3 5 5 C 1.46496 * 119.99896 * 299.99932 * 4 2 1 6 6 C 1.50705 * 109.47066 * 269.99622 * 5 4 2 7 7 H 1.08001 * 119.99987 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00059 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00144 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47074 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47142 * 119.99717 * 10 8 6 13 13 H 1.48503 * 109.47199 * 240.00337 * 10 8 6 14 14 C 1.34777 * 119.99832 * 119.99467 * 4 2 1 15 15 O 1.21278 * 119.99854 * 179.97438 * 14 4 2 16 16 C 1.50703 * 120.00161 * 0.02562 * 14 4 2 17 17 C 1.53000 * 109.46912 * 179.97438 * 16 14 4 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 14 19 19 O 1.21300 * 120.00069 * 359.97438 * 18 17 16 20 20 C 1.46863 * 120.00056 * 180.02562 * 18 17 16 21 21 C 1.40010 * 120.12427 * 359.73061 * 20 18 17 22 22 C 1.37600 * 119.93643 * 179.75586 * 21 20 18 23 23 C 1.39098 * 120.30834 * 0.58488 * 22 21 20 24 24 C 1.39357 * 120.08531 * 359.60912 * 23 22 21 25 25 C 1.38177 * 119.98656 * 0.12082 * 24 23 22 26 26 O 1.36147 * 120.75375 * 180.27139 * 24 23 22 27 27 C 1.43173 * 116.70863 * 342.86760 * 26 24 23 28 28 C 1.53460 * 108.23649 * 46.13290 * 27 26 24 29 29 O 1.35923 * 119.21730 * 179.51792 * 23 22 21 30 30 H 1.09000 * 109.46993 * 300.00067 * 1 2 3 31 31 H 1.09000 * 109.46852 * 59.99734 * 1 2 3 32 32 H 1.08993 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46993 * 239.99932 * 2 1 3 34 34 H 1.08996 * 109.47415 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46614 * 299.99740 * 3 2 1 36 36 H 1.08997 * 109.47486 * 59.99749 * 3 2 1 37 37 H 1.08998 * 109.47205 * 29.99486 * 5 4 2 38 38 H 1.08997 * 109.47416 * 150.00347 * 5 4 2 39 39 H 0.97001 * 120.00292 * 180.02562 * 9 8 6 40 40 H 1.09001 * 109.46980 * 59.99654 * 16 14 4 41 41 H 1.08992 * 109.47158 * 299.99760 * 16 14 4 42 42 H 1.09002 * 109.47398 * 300.00078 * 17 16 14 43 43 H 1.09001 * 109.47194 * 60.00258 * 17 16 14 44 44 H 1.08004 * 120.03291 * 0.02562 * 21 20 18 45 45 H 1.08000 * 119.84693 * 180.29143 * 22 21 20 46 46 H 1.07999 * 120.03103 * 179.97438 * 25 24 23 47 47 H 1.08992 * 109.71402 * 165.82520 * 27 26 24 48 48 H 1.09003 * 109.70443 * 286.45102 * 27 26 24 49 49 H 1.09005 * 109.70284 * 59.85743 * 28 27 26 50 50 H 1.08995 * 109.70840 * 180.47757 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5267 6 6 2.7033 0.8018 2.9830 7 1 3.5429 1.0362 2.3454 8 6 2.5813 1.4109 4.2139 9 7 1.5586 1.1258 4.9901 10 14 3.8685 2.6409 4.7791 11 1 4.9094 2.7854 3.7299 12 1 3.2237 3.9566 5.0204 13 1 4.4956 2.1589 6.0360 14 6 2.7931 -1.7865 1.0725 15 8 3.1977 -2.3579 2.0628 16 6 3.1575 -2.3011 -0.2962 17 6 4.0375 -3.5448 -0.1557 18 6 4.4014 -4.0598 -1.5245 19 8 3.9964 -3.4886 -2.5149 20 6 5.2456 -5.2540 -1.6592 21 6 5.7183 -5.9128 -0.5178 22 6 6.5048 -7.0343 -0.6485 23 6 6.8434 -7.5110 -1.9106 24 6 6.3801 -6.8583 -3.0514 25 6 5.5852 -5.7347 -2.9293 26 8 6.6986 -7.3163 -4.2933 27 6 7.8003 -8.2266 -4.3804 28 6 7.6382 -9.2835 -3.2797 29 8 7.6297 -8.6149 -2.0139 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6768 1.9564 0.8899 37 1 0.6905 0.2975 2.4843 38 1 1.6238 -1.0225 3.2292 39 1 1.4726 1.5546 5.8559 40 1 3.7028 -1.5303 -0.8409 41 1 2.2494 -2.5578 -0.8415 42 1 4.9457 -3.2877 0.3895 43 1 3.4926 -4.3158 0.3891 44 1 5.4623 -5.5436 0.4644 45 1 6.8648 -7.5441 0.2330 46 1 5.2260 -5.2281 -3.8128 47 1 7.8013 -8.7102 -5.3572 48 1 8.7359 -7.6862 -4.2362 49 1 6.6986 -9.8183 -3.4193 50 1 8.4708 -9.9858 -3.3190 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069656265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:43 Heat of formation + Delta-G solvation = -145.423196 kcal Electronic energy + Delta-G solvation = -31861.754741 eV Core-core repulsion = 27432.938473 eV Total energy + Delta-G solvation = -4428.816268 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35430 -41.13740 -40.38418 -38.36909 -38.28893 -37.55427 -34.97236 -33.95882 -32.39925 -32.37153 -31.85033 -30.16243 -29.34937 -27.98774 -27.00051 -25.95413 -24.70761 -23.61218 -22.85429 -22.43923 -20.64924 -19.75229 -19.40470 -18.63896 -18.56626 -18.32367 -17.80868 -17.06395 -16.91981 -16.70776 -16.47691 -16.10202 -15.94086 -15.80452 -15.65742 -15.45338 -14.97028 -14.84065 -14.81224 -14.53745 -14.31773 -14.27594 -14.02972 -13.63318 -13.52404 -13.34962 -13.27239 -13.01828 -12.84394 -12.72742 -12.67319 -12.42725 -12.23279 -12.21538 -12.11699 -12.06004 -12.04411 -11.60737 -11.54546 -11.47237 -10.82993 -10.58836 -10.51718 -9.81783 -9.37560 -9.24329 -8.16687 -6.28065 -0.49066 0.19660 1.27891 1.37213 1.39135 1.50577 1.87756 1.94584 2.13450 2.32352 2.46040 2.62731 3.02842 3.13121 3.16969 3.56695 3.64448 3.89913 3.91182 3.97846 4.03291 4.07164 4.11253 4.15109 4.25607 4.32185 4.35462 4.45233 4.56376 4.57794 4.63051 4.73774 4.85706 4.88803 4.89620 4.97917 4.99017 5.01998 5.05805 5.08266 5.15845 5.20594 5.27772 5.43146 5.45837 5.58145 5.67975 5.79612 5.92926 6.14984 6.27327 6.46054 6.77636 6.88135 7.34530 7.53759 8.90627 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.001884 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.437386 B =14857.679775 C =15797.247802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 C -0.151 4.151 4 N -0.598 5.598 5 C 0.263 3.737 6 C -0.522 4.522 7 H 0.053 0.947 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.268 1.268 12 H -0.273 1.273 13 H -0.283 1.283 14 C 0.497 3.503 15 O -0.591 6.591 16 C -0.119 4.119 17 C -0.145 4.145 18 C 0.414 3.586 19 O -0.479 6.479 20 C -0.177 4.177 21 C -0.057 4.057 22 C -0.130 4.130 23 C 0.079 3.921 24 C 0.025 3.975 25 C -0.066 4.066 26 O -0.324 6.324 27 C 0.012 3.988 28 C 0.013 3.987 29 O -0.315 6.315 30 H 0.040 0.960 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.024 0.976 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.163 0.837 45 H 0.162 0.838 46 H 0.138 0.862 47 H 0.155 0.845 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.596 -19.509 -21.203 30.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 C -0.209 4.209 4 N -0.329 5.329 5 C 0.142 3.858 6 C -0.561 4.561 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.199 1.199 13 H -0.209 1.209 14 C 0.286 3.714 15 O -0.473 6.473 16 C -0.159 4.159 17 C -0.182 4.182 18 C 0.294 3.706 19 O -0.357 6.357 20 C -0.179 4.179 21 C -0.075 4.075 22 C -0.148 4.148 23 C 0.033 3.967 24 C -0.020 4.020 25 C -0.085 4.085 26 O -0.239 6.239 27 C -0.062 4.062 28 C -0.061 4.061 29 O -0.229 6.229 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.014 0.986 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.180 0.820 45 H 0.179 0.821 46 H 0.156 0.844 47 H 0.173 0.827 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.531 -19.493 -21.098 30.594 hybrid contribution 0.496 0.627 0.808 1.137 sum 11.027 -18.866 -20.290 29.819 Atomic orbital electron populations 1.22110 0.94303 1.02227 1.02735 1.21400 0.95236 0.94040 0.87249 1.22071 1.00613 0.95868 1.02374 1.48367 1.49324 1.27004 1.08211 1.18663 0.95182 0.92758 0.79245 1.21686 1.08893 1.23383 1.02121 0.92831 1.25792 0.97809 0.99132 0.96609 1.70058 1.31261 1.44614 1.11120 0.85469 0.79144 0.78724 0.78096 1.19186 1.19868 1.20913 1.21196 0.78014 0.80209 0.91979 1.90623 1.55199 1.59602 1.41844 1.21438 1.02513 0.98842 0.93086 1.21746 1.02552 0.98381 0.95554 1.22371 0.75867 0.81871 0.90491 1.90516 1.47125 1.56268 1.41755 1.20174 1.04475 0.99640 0.93562 1.21528 0.93848 0.93089 0.99069 1.20706 1.00358 0.98282 0.95473 1.19435 0.94848 0.88617 0.93834 1.18780 1.02442 0.96366 0.84387 1.20654 0.96779 0.92927 0.98160 1.86324 1.50996 1.62059 1.24550 1.24010 0.88319 0.90699 1.03188 1.24043 1.06664 0.94744 0.80675 1.86272 1.61893 1.38098 1.36611 0.94128 0.88738 0.92449 0.87124 0.93823 0.89446 0.93597 0.95805 0.98638 0.92687 0.87850 0.87190 0.87111 0.86649 0.81969 0.82078 0.84395 0.82721 0.90072 0.89798 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 9.17 71.98 0.66 -3.82 16 2 C 0.12 3.96 3.17 44.99 0.14 4.11 16 3 C -0.15 -4.95 8.47 71.98 0.61 -4.34 16 4 N -0.60 -25.33 2.39 -802.14 -1.91 -27.24 16 5 C 0.26 14.07 4.59 85.64 0.39 14.47 16 6 C -0.52 -29.70 7.83 25.60 0.20 -29.50 16 7 H 0.05 3.03 7.63 -2.91 -0.02 3.01 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -56.38 13.29 21.44 0.28 -56.10 16 10 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 14 C 0.50 20.24 7.67 87.66 0.67 20.91 16 15 O -0.59 -29.11 15.56 -3.02 -0.05 -29.15 16 16 C -0.12 -3.43 3.30 29.85 0.10 -3.33 16 17 C -0.14 -3.61 3.59 29.85 0.11 -3.51 16 18 C 0.41 10.02 7.11 27.95 0.20 10.22 16 19 O -0.48 -13.71 15.97 -3.09 -0.05 -13.76 16 20 C -0.18 -3.87 5.87 -20.17 -0.12 -3.99 16 21 C -0.06 -1.04 9.46 22.55 0.21 -0.82 16 22 C -0.13 -2.23 9.94 22.33 0.22 -2.01 16 23 C 0.08 1.49 6.51 22.75 0.15 1.64 16 24 C 0.03 0.52 6.48 22.52 0.15 0.67 16 25 C -0.07 -1.50 9.50 22.68 0.22 -1.28 16 26 O -0.32 -5.91 10.41 -83.05 -0.86 -6.78 16 27 C 0.01 0.11 7.26 72.14 0.52 0.63 16 28 C 0.01 0.10 7.25 72.14 0.52 0.63 16 29 O -0.31 -4.98 10.40 -80.51 -0.84 -5.82 16 30 H 0.04 1.38 6.66 -2.39 -0.02 1.37 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.11 2.86 5.77 -2.39 -0.01 2.85 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.04 1.81 6.92 -2.39 -0.02 1.80 16 37 H 0.02 1.31 6.43 -2.39 -0.02 1.30 16 38 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.10 2.80 7.75 -2.39 -0.02 2.78 16 41 H 0.11 2.78 7.74 -2.39 -0.02 2.77 16 42 H 0.11 2.76 8.03 -2.39 -0.02 2.74 16 43 H 0.12 2.73 8.05 -2.39 -0.02 2.71 16 44 H 0.16 2.43 7.04 -2.91 -0.02 2.41 16 45 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 46 H 0.14 3.21 7.64 -2.91 -0.02 3.19 16 47 H 0.16 0.30 8.14 -2.39 -0.02 0.29 16 48 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -78.96 410.09 4.97 -73.99 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.95 Total: 16.16 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 5.42 Total: 1.41 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.63 Total: -83.34 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -1.80 Total: -55.51 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -78.96 4.97 -73.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.435 kcal (2) G-P(sol) polarization free energy of solvation -78.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds