Wall clock time and date at job start Tue Mar 31 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48504 * 109.46865 * 239.99893 * 3 2 1 5 5 H 1.48500 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47065 * 120.00000 * 3 2 1 7 7 C 1.39936 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99642 * 197.88023 * 7 2 1 9 9 C 1.41427 * 120.00050 * 17.88545 * 7 2 1 10 10 C 1.40788 * 120.17755 * 204.44309 * 9 7 2 11 11 C 1.37711 * 120.04209 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41103 * 359.69297 * 11 10 9 13 13 C 1.39884 * 120.35817 * 0.56230 * 12 11 10 14 14 C 1.47881 * 120.02737 * 179.73841 * 13 12 11 15 15 O 1.21548 * 120.00330 * 179.72241 * 14 13 12 16 16 N 1.34778 * 119.99656 * 359.72790 * 14 13 12 17 17 C 1.46507 * 119.99484 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.46785 * 179.97438 * 17 16 14 19 19 C 1.38284 * 119.97439 * 270.02424 * 18 17 16 20 20 C 1.38248 * 120.11064 * 180.02562 * 19 18 17 21 21 C 1.38161 * 120.05604 * 359.67569 * 20 19 18 22 22 C 1.38715 * 119.94290 * 0.57512 * 21 20 19 23 23 O 1.35901 * 120.05714 * 179.71887 * 22 21 20 24 24 C 1.42903 * 116.99862 * 359.72932 * 23 22 21 25 25 C 1.53002 * 109.46987 * 179.97438 * 24 23 22 26 26 F 1.39899 * 109.47119 * 299.99944 * 25 24 23 27 27 F 1.39895 * 109.46922 * 60.00116 * 25 24 23 28 28 C 1.38122 * 119.96891 * 90.00387 * 18 17 16 29 29 C 1.39029 * 119.94515 * 359.46652 * 13 12 11 30 30 H 0.97002 * 119.99571 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.97920 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.79552 * 179.97438 * 11 10 9 33 33 H 1.08002 * 119.82083 * 180.28025 * 12 11 10 34 34 H 0.96995 * 120.00435 * 359.97438 * 16 14 13 35 35 H 1.08998 * 109.47101 * 60.00237 * 17 16 14 36 36 H 1.09001 * 109.47067 * 299.99590 * 17 16 14 37 37 H 1.07999 * 119.94736 * 359.97438 * 19 18 17 38 38 H 1.07993 * 119.96707 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.03341 * 180.29875 * 21 20 19 40 40 H 1.08997 * 109.47334 * 299.99870 * 24 23 22 41 41 H 1.09003 * 109.47118 * 59.99714 * 24 23 22 42 42 H 1.09002 * 109.46920 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.03227 * 0.02562 * 28 18 17 44 44 H 1.08003 * 120.20252 * 180.23048 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2343 0.2877 9 6 1.3520 -2.4073 -0.3751 10 6 1.8262 -3.6499 0.0867 11 6 1.1857 -4.8121 -0.2812 12 6 0.0708 -4.7686 -1.0998 13 6 -0.4117 -3.5437 -1.5726 14 6 -1.6003 -3.5061 -2.4517 15 8 -2.0221 -2.4412 -2.8582 16 7 -2.2158 -4.6528 -2.8019 17 6 -3.3937 -4.6155 -3.6723 18 6 -3.8870 -6.0195 -3.9103 19 6 -3.4045 -6.7491 -4.9813 20 6 -3.8555 -8.0371 -5.2026 21 6 -4.7848 -8.6009 -4.3498 22 6 -5.2743 -7.8693 -3.2778 23 8 -6.1928 -8.4195 -2.4408 24 6 -6.6145 -9.7544 -2.7279 25 6 -7.6418 -10.2000 -1.6852 26 9 -7.0629 -10.1574 -0.4124 27 9 -8.7470 -9.3433 -1.7238 28 6 -4.8205 -6.5766 -3.0582 29 6 0.2238 -2.3612 -1.2109 30 1 -0.4849 0.8401 -0.0004 31 1 2.6928 -3.6916 0.7298 32 1 1.5531 -5.7632 0.0749 33 1 -0.4268 -5.6856 -1.3787 34 1 -1.8790 -5.5027 -2.4778 35 1 -3.1271 -4.1581 -4.6251 36 1 -4.1796 -4.0299 -3.1953 37 1 -2.6747 -6.3118 -5.6466 38 1 -3.4774 -8.6046 -6.0400 39 1 -5.1333 -9.6088 -4.5202 40 1 -7.0651 -9.7877 -3.7198 41 1 -5.7533 -10.4220 -2.6975 42 1 -7.9638 -11.2181 -1.9045 43 1 -5.1971 -6.0064 -2.2219 44 1 -0.1474 -1.4129 -1.5706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069744432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:05 Heat of formation + Delta-G solvation = -135.536839 kcal Electronic energy + Delta-G solvation = -30098.119265 eV Core-core repulsion = 25422.811092 eV Total energy + Delta-G solvation = -4675.308173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.128 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.38447 -47.41591 -40.57621 -39.23247 -38.02598 -36.94835 -34.48518 -33.70464 -31.77901 -31.41669 -29.99527 -29.58004 -29.40818 -26.40796 -25.20903 -24.00010 -22.89943 -22.32202 -21.25589 -20.86553 -19.57819 -18.77726 -17.97490 -17.77322 -17.47886 -17.19599 -16.26252 -16.17803 -16.00967 -15.74285 -15.51730 -15.05621 -14.74727 -14.54766 -14.25714 -14.11593 -13.76275 -13.73118 -13.68492 -13.34820 -13.12330 -12.97012 -12.70364 -12.59348 -12.45712 -12.31433 -11.87825 -11.62914 -11.59455 -11.51119 -11.14964 -11.13149 -11.05892 -10.73592 -10.49093 -10.03444 -9.68396 -9.37848 -9.19424 -8.91554 -8.68837 -8.53440 -7.61862 -7.50673 -6.78697 -4.40007 0.92810 1.14567 2.22184 2.42242 2.83575 3.08582 3.10366 3.17949 3.22215 3.32557 3.58771 3.85714 3.87470 3.93056 3.95572 4.26685 4.39194 4.48634 4.57532 4.65186 4.75812 4.76548 5.04094 5.05402 5.21825 5.50565 5.60789 5.63938 5.77501 5.90025 5.95202 6.09810 6.12247 6.29436 6.32589 6.42255 6.73034 6.81696 6.95828 6.99914 7.03232 7.22654 7.39372 7.71496 7.76999 7.93844 8.09678 8.20151 8.51658 8.81317 8.84781 8.94705 10.15983 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.001779 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.410111 B =15734.030105 C =16101.131708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.127 4.127 14 C 0.565 3.435 15 O -0.545 6.545 16 N -0.733 5.733 17 C 0.161 3.839 18 C -0.060 4.060 19 C -0.134 4.134 20 C -0.082 4.082 21 C -0.205 4.205 22 C 0.123 3.877 23 O -0.303 6.303 24 C 0.006 3.994 25 C 0.273 3.727 26 F -0.196 7.196 27 F -0.197 7.197 28 C -0.127 4.127 29 C -0.093 4.093 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.401 0.599 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.130 -20.756 -9.038 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.130 4.130 14 C 0.356 3.644 15 O -0.423 6.423 16 N -0.387 5.387 17 C 0.037 3.963 18 C -0.060 4.060 19 C -0.153 4.153 20 C -0.100 4.100 21 C -0.224 4.224 22 C 0.079 3.921 23 O -0.217 6.217 24 C -0.071 4.071 25 C 0.219 3.781 26 F -0.177 7.177 27 F -0.179 7.179 28 C -0.146 4.146 29 C -0.113 4.113 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.236 0.764 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.772 -19.690 -9.115 25.699 hybrid contribution 0.401 0.019 0.149 0.428 sum -13.371 -19.671 -8.966 25.419 Atomic orbital electron populations 1.69786 1.07572 1.29894 1.33433 1.25972 0.94778 1.01552 0.92333 0.86322 0.80106 0.80107 0.79962 1.18724 1.20226 1.18974 1.19551 0.98212 0.91057 1.40059 0.90111 1.17598 0.91207 0.92455 0.89166 1.21096 1.03531 0.92750 1.05759 1.20434 0.96013 0.96733 0.98436 1.20343 1.01227 0.94634 1.07558 1.19446 0.96496 0.95320 1.01764 1.18866 0.83271 0.82704 0.79603 1.90700 1.66278 1.29846 1.55509 1.45982 1.30519 1.09976 1.52257 1.20115 0.88799 0.91616 0.95739 1.19780 0.95650 0.95944 0.94633 1.21094 1.01102 0.94666 0.98411 1.20923 0.95644 0.95051 0.98341 1.21211 1.02899 1.00734 0.97559 1.18904 0.90143 0.93058 0.90040 1.86148 1.56414 1.28216 1.50875 1.24011 0.98822 0.84823 0.99458 1.22026 0.81228 0.94461 0.80340 1.93047 1.84773 1.97455 1.42449 1.93036 1.54711 1.73724 1.96395 1.20405 0.99534 0.93142 1.01504 1.21639 0.96486 0.96442 0.96716 0.90361 0.88627 0.88922 0.89277 0.76376 0.90560 0.90647 0.85309 0.85447 0.85594 0.88888 0.88819 0.85155 0.84660 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.89 10.96 55.55 0.61 -20.28 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.89 29.60 -169.99 -5.03 13.86 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 9 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 10 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 11 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 12 C -0.22 -4.63 9.55 -38.91 -0.37 -5.00 16 13 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 14 C 0.56 12.41 7.77 -12.31 -0.10 12.32 16 15 O -0.55 -13.69 16.33 5.32 0.09 -13.61 16 16 N -0.73 -12.27 5.50 -62.41 -0.34 -12.61 16 17 C 0.16 2.26 5.80 -5.19 -0.03 2.23 16 18 C -0.06 -0.69 5.25 -104.65 -0.55 -1.24 16 19 C -0.13 -1.34 9.70 -39.56 -0.38 -1.72 16 20 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 21 C -0.21 -1.71 9.04 -39.43 -0.36 -2.06 16 22 C 0.12 1.30 6.69 -39.21 -0.26 1.03 16 23 O -0.30 -3.15 10.02 -19.43 -0.19 -3.34 16 24 C 0.01 0.03 4.96 37.16 0.18 0.22 16 25 C 0.27 1.55 5.63 37.16 0.21 1.76 16 26 F -0.20 -1.79 17.28 2.25 0.04 -1.75 16 27 F -0.20 -1.74 17.28 2.25 0.04 -1.70 16 28 C -0.13 -1.49 9.64 -39.43 -0.38 -1.87 16 29 C -0.09 -2.49 8.24 -38.44 -0.32 -2.81 16 30 H 0.29 7.02 8.30 -40.82 -0.34 6.68 16 31 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.59 6.38 -52.49 -0.33 1.25 16 34 H 0.40 6.03 6.48 -40.82 -0.26 5.77 16 35 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.08 1.10 8.09 -51.93 -0.42 0.69 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.67 6.30 -52.49 -0.33 0.34 16 40 H 0.09 0.32 7.67 -51.93 -0.40 -0.08 16 41 H 0.09 0.35 7.65 -51.93 -0.40 -0.05 16 42 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.13 3.88 5.74 -52.48 -0.30 3.58 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -32.88 387.03 -9.08 -41.97 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.95 Total: 10.15 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -5.17 Total: -18.51 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.27 Total: -32.90 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.11 Total: -16.95 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.88 -9.08 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069744432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.569 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds