Wall clock time and date at job start Tue Mar 31 2020 05:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00135 * 2 1 4 4 C 1.38755 * 120.05790 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94572 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05627 * 359.97438 * 5 4 3 7 7 C 1.38236 * 120.10963 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05969 * 0.02562 * 7 6 5 9 9 S 1.76204 * 120.02999 * 179.97438 * 8 7 6 10 10 O 1.42101 * 106.40056 * 228.53415 * 9 8 7 11 11 O 1.42097 * 106.40196 * 1.45483 * 9 8 7 12 12 N 1.65604 * 107.21660 * 114.99563 * 9 8 7 13 13 C 1.46501 * 119.99960 * 96.28699 * 12 9 8 14 14 C 1.50697 * 109.47328 * 94.99629 * 13 12 9 15 15 H 1.07998 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99675 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00187 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99617 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47509 * 89.99719 * 18 16 14 20 20 H 1.48506 * 109.46848 * 209.99569 * 18 16 14 21 21 H 1.48499 * 109.46881 * 329.99253 * 18 16 14 22 22 C 1.39677 * 119.99882 * 276.28066 * 12 9 8 23 23 C 1.38930 * 120.07367 * 238.83719 * 22 12 9 24 24 C 1.38086 * 119.92399 * 179.79031 * 23 22 12 25 25 C 1.38308 * 120.07243 * 0.49214 * 24 23 22 26 26 C 1.38257 * 120.15046 * 359.73864 * 25 24 23 27 27 C 1.50697 * 119.96450 * 180.02562 * 26 25 24 28 28 C 1.38128 * 120.07649 * 0.02747 * 26 25 24 29 29 H 1.09003 * 109.47093 * 299.99792 * 1 2 3 30 30 H 1.09002 * 109.46916 * 59.99792 * 1 2 3 31 31 H 1.09005 * 109.47094 * 179.97438 * 1 2 3 32 32 H 1.08006 * 120.02346 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.97014 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.94269 * 179.74348 * 6 5 4 35 35 H 1.08003 * 119.96978 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.46659 * 215.00069 * 13 12 9 37 37 H 1.08996 * 109.47103 * 334.99299 * 13 12 9 38 38 H 0.97007 * 119.99774 * 179.97438 * 17 16 14 39 39 H 1.08009 * 120.03580 * 0.02562 * 23 22 12 40 40 H 1.08002 * 119.96034 * 180.21148 * 24 23 22 41 41 H 1.07997 * 119.92267 * 179.76557 * 25 24 23 42 42 H 1.08996 * 109.47344 * 270.02334 * 27 26 25 43 43 H 1.09009 * 109.47003 * 30.02106 * 27 26 25 44 44 H 1.09001 * 109.47331 * 150.02108 * 27 26 25 45 45 H 1.07999 * 120.03784 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5170 -0.0011 8 6 3.4311 1.2847 -0.0016 9 16 4.3929 -0.1917 -0.0030 10 8 3.8551 -1.0199 -1.0248 11 8 5.7537 0.2159 0.0313 12 7 4.1010 -0.9681 1.4303 13 6 3.1010 -2.0368 1.4940 14 6 3.7801 -3.3712 1.3235 15 1 4.8497 -3.4185 1.1814 16 6 3.0359 -4.5316 1.3478 17 7 1.7334 -4.4739 1.5204 18 14 3.8779 -6.1858 1.1371 19 1 4.2798 -6.7097 2.4672 20 1 2.9403 -7.1398 0.4920 21 1 5.0827 -6.0228 0.2845 22 6 4.8084 -0.6042 2.5784 23 6 5.5782 -1.5460 3.2497 24 6 6.2797 -1.1818 4.3819 25 6 6.2085 0.1164 4.8537 26 6 5.4396 1.0549 4.1908 27 6 5.3655 2.4684 4.7081 28 6 4.7392 0.6986 3.0549 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3203 0.0005 33 1 1.3341 4.5113 0.0000 34 1 3.7923 4.6379 -0.0051 35 1 5.1344 2.5751 -0.0019 36 1 2.5976 -2.0061 2.4603 37 1 2.3690 -1.8973 0.6986 38 1 1.2097 -5.2904 1.5371 39 1 5.6308 -2.5610 2.8841 40 1 6.8810 -1.9127 4.9022 41 1 6.7552 0.3976 5.7416 42 1 4.5381 2.5547 5.4123 43 1 6.2989 2.7204 5.2117 44 1 5.2061 3.1525 3.8746 45 1 4.1391 1.4323 2.5373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069967539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:32 Heat of formation + Delta-G solvation = -49.487150 kcal Electronic energy + Delta-G solvation = -31721.643484 eV Core-core repulsion = 27603.907092 eV Total energy + Delta-G solvation = -4117.736392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.14797 -39.11002 -37.49448 -36.44493 -35.55237 -35.12750 -32.60495 -32.03020 -31.41796 -30.16782 -29.49615 -27.24277 -26.70728 -26.46204 -23.27048 -22.77443 -22.22470 -21.98997 -20.71658 -18.89842 -18.11150 -17.25943 -16.89171 -16.37204 -16.15181 -15.88095 -15.55522 -15.46220 -14.94107 -14.70515 -14.44357 -14.37884 -13.96580 -13.70293 -13.52406 -13.29795 -12.90142 -12.63165 -12.60986 -12.34166 -12.14381 -11.96448 -11.75500 -11.62268 -11.50746 -11.45649 -11.35800 -11.14842 -11.09720 -11.03063 -10.87481 -10.80569 -10.43832 -10.32999 -10.16293 -9.67514 -9.37712 -8.73970 -8.42238 -8.36575 -8.29531 -7.66219 -6.05858 -4.08754 0.77960 1.07623 1.34294 1.81727 1.85178 3.24923 3.32326 3.37869 3.38768 3.44899 3.70544 4.16399 4.36757 4.44966 4.64389 4.69944 5.01272 5.03749 5.12890 5.19827 5.23094 5.27375 5.29624 5.37773 5.45549 5.53537 5.59616 5.68263 5.72635 5.74784 5.83721 5.92062 5.95515 6.07391 6.09969 6.10325 6.28697 6.45634 6.53828 6.64555 6.86721 6.99341 7.12777 7.22958 7.28126 7.39613 7.47166 7.84250 7.93271 8.19817 8.91501 9.54933 11.02937 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.005595 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.354420 B = 5003.462310 C = 6976.205253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.292 6.292 3 C 0.230 3.770 4 C -0.232 4.232 5 C -0.032 4.032 6 C -0.185 4.185 7 C 0.012 3.988 8 C -0.713 4.713 9 S 2.690 3.310 10 O -0.928 6.928 11 O -0.968 6.968 12 N -0.933 5.933 13 C 0.252 3.748 14 C -0.530 4.530 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.271 1.271 22 C 0.186 3.814 23 C -0.112 4.112 24 C -0.106 4.106 25 C -0.139 4.139 26 C -0.078 4.078 27 C -0.109 4.109 28 C -0.152 4.152 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.263 0.737 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 16.560 2.762 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.202 6.202 3 C 0.181 3.819 4 C -0.252 4.252 5 C -0.050 4.050 6 C -0.204 4.204 7 C -0.007 4.007 8 C -0.798 4.798 9 S 2.779 3.221 10 O -0.918 6.918 11 O -0.959 6.959 12 N -0.764 5.764 13 C 0.133 3.867 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.196 1.196 22 C 0.090 3.910 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.158 4.158 26 C -0.078 4.078 27 C -0.166 4.166 28 C -0.173 4.173 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.161 0.839 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.063 15.943 2.025 16.071 hybrid contribution -0.590 -0.325 0.172 0.695 sum -0.653 15.618 2.197 15.786 Atomic orbital electron populations 1.23211 0.77124 1.05483 1.00879 1.86363 1.22660 1.25121 1.86095 1.18468 0.90592 0.85416 0.87391 1.21325 1.00377 0.92331 1.11145 1.21172 0.94799 0.96992 0.92056 1.21115 0.93999 0.98443 1.06858 1.20843 1.00563 0.90094 0.89224 1.30610 1.04688 1.20776 1.23682 1.02223 0.73468 0.72914 0.73468 1.93616 1.79738 1.64730 1.53735 1.93518 1.31946 1.83717 1.86673 1.55463 1.50722 1.48299 1.21897 1.19407 0.85467 0.82443 0.99417 1.21487 0.94495 0.90804 1.50144 0.91984 1.24872 0.94797 0.99113 0.94851 1.69915 1.05088 1.28419 1.49751 0.86561 0.79612 0.83416 0.78308 1.20572 1.21065 1.19610 1.17366 0.92348 0.92658 0.88599 1.21607 0.94798 1.01119 0.95757 1.21031 0.99194 0.95983 0.96269 1.20880 1.01084 0.93496 1.00358 1.19543 0.97374 0.95815 0.95103 1.20738 1.02002 0.92847 1.01014 1.21099 1.02212 0.96201 0.97830 0.92373 0.92537 0.86786 0.84704 0.85357 0.85203 0.83631 0.94645 0.91671 0.92759 0.83909 0.86100 0.86619 0.91553 0.91750 0.91872 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.29 -5.31 7.13 -29.07 -0.21 -5.52 16 3 C 0.23 3.85 6.63 -39.22 -0.26 3.59 16 4 C -0.23 -2.97 9.04 -39.44 -0.36 -3.33 16 5 C -0.03 -0.35 10.04 -39.61 -0.40 -0.74 16 6 C -0.19 -2.14 10.04 -39.56 -0.40 -2.54 16 7 C 0.01 0.17 9.13 -39.61 -0.36 -0.19 16 8 C -0.71 -12.66 4.89 -39.43 -0.19 -12.86 16 9 S 2.69 58.90 4.94 -107.50 -0.53 58.37 16 10 O -0.93 -23.38 16.07 -62.47 -1.00 -24.38 16 11 O -0.97 -21.65 16.30 -57.17 -0.93 -22.58 16 12 N -0.93 -20.98 2.86 -59.81 -0.17 -21.16 16 13 C 0.25 6.43 4.78 -5.19 -0.02 6.40 16 14 C -0.53 -14.67 8.20 -34.44 -0.28 -14.95 16 15 H 0.06 1.71 6.97 -52.49 -0.37 1.34 16 16 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.19 3.82 4.95 -83.79 -0.41 3.41 16 23 C -0.11 -2.22 9.51 -39.38 -0.37 -2.59 16 24 C -0.11 -1.72 10.04 -39.61 -0.40 -2.12 16 25 C -0.14 -2.04 9.70 -39.55 -0.38 -2.43 16 26 C -0.08 -1.18 5.88 -104.66 -0.62 -1.79 16 27 C -0.11 -1.23 10.01 36.00 0.36 -0.87 16 28 C -0.15 -2.70 9.27 -39.38 -0.37 -3.06 16 29 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 30 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.14 1.35 6.30 -52.48 -0.33 1.02 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.15 2.00 7.33 -52.48 -0.38 1.61 16 36 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.07 1.74 5.43 -51.93 -0.28 1.45 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.14 3.03 6.20 -52.48 -0.33 2.70 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.61 8.09 -51.92 -0.42 0.19 16 44 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 45 H 0.12 1.91 6.54 -52.49 -0.34 1.57 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -34.16 384.01 -10.67 -44.83 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.76 Total: 3.81 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -3.57 Total: -30.98 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.57 Total: -45.86 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -2.14 Total: -52.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 58.90 SS G_CDS: -0.53 Total: 58.37 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.16 -10.67 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069967539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.659 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds