Wall clock time and date at job start Tue Mar 31 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35838 * 117.00178 * 2 1 4 4 C 1.38939 * 119.91018 * 0.02562 * 3 2 1 5 5 C 1.37823 * 120.12592 * 179.76739 * 4 3 2 6 6 C 1.39482 * 119.95111 * 0.46684 * 5 4 3 7 7 C 1.48163 * 120.08592 * 179.79057 * 6 5 4 8 8 C 1.39638 * 119.95915 * 129.97084 * 7 6 5 9 9 C 1.36531 * 120.22071 * 180.25565 * 8 7 6 10 10 C 1.39808 * 120.13300 * 359.49960 * 9 8 7 11 11 C 1.47507 * 120.04380 * 180.27981 * 10 9 8 12 12 O 1.21594 * 120.00313 * 130.89378 * 11 10 9 13 13 N 1.34777 * 119.99792 * 310.88695 * 11 10 9 14 14 C 1.46509 * 120.00054 * 4.41122 * 13 11 10 15 15 C 1.46497 * 120.00406 * 184.40831 * 13 11 10 16 16 C 1.50704 * 109.46928 * 89.99817 * 15 13 11 17 17 H 1.07998 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.37883 * 119.99876 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99608 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00048 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47225 * 90.00020 * 20 18 16 22 22 H 1.48502 * 109.47132 * 209.99952 * 20 18 16 23 23 H 1.48504 * 109.47029 * 330.00063 * 20 18 16 24 24 C 1.40006 * 119.90956 * 0.24669 * 10 9 8 25 25 F 1.35102 * 120.10491 * 180.02562 * 24 10 9 26 26 C 1.38017 * 119.78465 * 0.02562 * 24 10 9 27 27 C 1.39686 * 119.82759 * 359.51373 * 6 5 4 28 28 F 1.35101 * 120.06117 * 180.27274 * 27 6 5 29 29 C 1.38129 * 119.87147 * 0.25712 * 27 6 5 30 30 H 1.09002 * 109.47036 * 299.99701 * 1 2 3 31 31 H 1.08993 * 109.47252 * 60.00073 * 1 2 3 32 32 H 1.09004 * 109.47260 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.93723 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.02324 * 180.23108 * 5 4 3 35 35 H 1.07999 * 119.88917 * 0.02648 * 8 7 6 36 36 H 1.08002 * 119.92913 * 179.77175 * 9 8 7 37 37 H 1.08996 * 109.47171 * 93.01775 * 14 13 11 38 38 H 1.09001 * 109.46667 * 213.01758 * 14 13 11 39 39 H 1.08998 * 109.46728 * 333.01070 * 14 13 11 40 40 H 1.08995 * 109.47862 * 210.00423 * 15 13 11 41 41 H 1.09009 * 109.46927 * 330.00609 * 15 13 11 42 42 H 0.97008 * 119.99459 * 180.02562 * 19 18 16 43 43 H 1.07991 * 120.06787 * 179.97438 * 26 24 10 44 44 H 1.08002 * 119.97273 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2872 2.3744 0.0005 5 6 1.9083 3.6047 0.0054 6 6 3.3010 3.6818 -0.0001 7 6 3.9718 5.0028 0.0004 8 6 4.9842 5.2705 0.9241 9 6 5.6023 6.4878 0.9327 10 6 5.2316 7.4698 0.0091 11 6 5.9050 8.7821 0.0162 12 8 6.3329 9.2516 -1.0206 13 7 6.0458 9.4610 1.1720 14 6 5.6175 8.8543 2.4348 15 6 6.6272 10.8057 1.1656 16 6 5.5315 11.8258 0.9927 17 1 4.5048 11.5047 0.8976 18 6 5.8399 13.1692 0.9560 19 7 7.0903 13.5602 1.0713 20 14 4.4817 14.4338 0.7424 21 1 3.9709 14.8416 2.0758 22 1 5.0194 15.6228 0.0335 23 1 3.3751 13.8424 -0.0520 24 6 4.2208 7.2055 -0.9229 25 9 3.8598 8.1514 -1.8175 26 6 3.5945 5.9757 -0.9248 27 6 4.0616 2.5102 -0.0002 28 9 5.4109 2.5793 0.0001 29 6 3.4317 1.2809 -0.0002 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.2088 2.3150 0.0014 34 1 1.3171 4.5085 0.0096 35 1 5.2767 4.5133 1.6365 36 1 6.3823 6.6911 1.6516 37 1 6.4623 8.3444 2.8979 38 1 5.2503 9.6314 3.1051 39 1 4.8212 8.1357 2.2410 40 1 7.1432 10.9830 2.1091 41 1 7.3363 10.8910 0.3420 42 1 7.3072 14.5054 1.0458 43 1 2.8140 5.7671 -1.6414 44 1 4.0182 0.3740 -0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071884598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:38 Heat of formation + Delta-G solvation = -100.164186 kcal Electronic energy + Delta-G solvation = -31104.294191 eV Core-core repulsion = 26430.519891 eV Total energy + Delta-G solvation = -4673.774300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.128 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.26270 -48.69925 -40.65778 -39.80247 -38.47435 -37.24186 -34.87981 -32.97695 -32.32069 -31.30212 -30.81056 -29.37065 -27.99170 -27.47167 -25.95761 -24.36889 -23.55176 -22.68876 -22.40904 -21.51832 -19.22945 -18.98786 -17.65329 -17.30972 -16.83163 -16.56938 -16.51147 -16.43747 -16.24464 -15.80961 -15.65630 -15.59042 -15.14635 -15.02402 -14.58809 -14.34753 -14.24005 -14.02317 -13.74342 -13.30664 -13.14539 -12.96443 -12.79552 -12.61505 -12.54083 -12.29727 -12.09692 -11.92830 -11.82876 -11.50254 -11.42991 -11.23832 -11.17778 -10.89722 -10.58556 -10.16401 -9.65791 -9.38674 -9.35023 -9.05746 -8.89272 -8.43561 -8.30881 -7.69151 -6.04328 -4.09111 0.34156 0.68436 1.10186 1.14287 2.58206 2.98590 3.20578 3.30858 3.37594 3.42283 3.57296 3.88049 3.92546 4.03673 4.21004 4.37766 4.43123 4.45139 4.56092 4.61465 4.66930 4.78622 4.88474 4.90224 4.95169 4.98622 5.17530 5.30113 5.33530 5.50520 5.59376 5.65606 5.68738 5.77255 5.86079 5.91856 5.97280 6.11243 6.17272 6.20283 6.23884 6.69871 6.75936 7.01989 7.42025 7.49387 7.91770 8.21946 8.31831 8.85475 9.01082 9.55753 11.03779 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.002055 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.129259 B =13618.991932 C =14142.892025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.160 3.840 4 C -0.217 4.217 5 C -0.033 4.033 6 C -0.117 4.117 7 C -0.011 4.011 8 C -0.118 4.118 9 C -0.060 4.060 10 C -0.143 4.143 11 C 0.546 3.454 12 O -0.525 6.525 13 N -0.592 5.592 14 C 0.077 3.923 15 C 0.244 3.756 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.148 3.852 25 F -0.120 7.120 26 C -0.146 4.146 27 C 0.157 3.843 28 F -0.124 7.124 29 C -0.190 4.190 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.141 0.859 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 -29.040 2.048 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.114 3.886 4 C -0.236 4.236 5 C -0.051 4.051 6 C -0.118 4.118 7 C -0.011 4.011 8 C -0.136 4.136 9 C -0.079 4.079 10 C -0.148 4.148 11 C 0.331 3.669 12 O -0.402 6.402 13 N -0.323 5.323 14 C -0.067 4.067 15 C 0.126 3.874 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.128 3.872 25 F -0.098 7.098 26 C -0.165 4.165 27 C 0.137 3.863 28 F -0.102 7.102 29 C -0.209 4.209 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.159 0.841 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.666 -28.736 1.483 31.439 hybrid contribution -0.833 1.057 -0.188 1.359 sum -13.500 -27.680 1.296 30.823 Atomic orbital electron populations 1.23154 0.77625 1.04411 1.01794 1.86067 1.21959 1.26455 1.88059 1.18706 0.91346 0.84524 0.94046 1.21250 1.00671 0.91780 1.09908 1.20947 0.92254 0.97894 0.94016 1.18644 0.93421 0.91008 1.08726 1.18343 0.95849 0.91575 0.95331 1.20873 0.96288 0.97213 0.99244 1.20964 0.98707 0.91815 0.96415 1.20463 0.98861 0.97558 0.97869 1.17891 0.80667 0.83631 0.84674 1.90802 1.49012 1.68842 1.31566 1.48083 1.60428 1.18636 1.05156 1.21859 0.98834 0.98862 0.87124 1.19364 0.94365 0.75139 0.98580 1.21423 0.93801 0.90973 1.50464 0.92418 1.24938 0.95716 0.98418 0.95031 1.69937 1.17104 1.16148 1.50072 0.86481 0.81957 0.80783 0.78138 1.20611 1.21035 1.19848 1.17497 0.94861 0.86432 0.88449 1.91592 1.90168 1.63096 1.64924 1.21039 1.02575 0.91698 1.01208 1.17240 0.77100 0.92591 0.99319 1.91557 1.28315 1.97042 1.93261 1.20152 0.92523 0.97555 1.10702 0.92204 0.92209 0.87875 0.84417 0.84107 0.84930 0.84006 0.93369 0.90676 0.91930 0.94636 0.93509 0.92682 0.84133 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.20 10.49 -19.23 -0.20 -2.40 16 3 C 0.16 1.23 6.69 -39.12 -0.26 0.97 16 4 C -0.22 -1.42 9.02 -39.47 -0.36 -1.78 16 5 C -0.03 -0.25 9.50 -39.27 -0.37 -0.62 16 6 C -0.12 -1.12 5.47 -104.82 -0.57 -1.69 16 7 C -0.01 -0.12 5.32 -104.85 -0.56 -0.68 16 8 C -0.12 -1.33 8.78 -39.68 -0.35 -1.68 16 9 C -0.06 -0.80 7.54 -39.61 -0.30 -1.10 16 10 C -0.14 -2.49 4.90 -104.87 -0.51 -3.01 16 11 C 0.55 12.26 6.99 -12.48 -0.09 12.17 16 12 O -0.53 -14.21 16.20 5.28 0.09 -14.12 16 13 N -0.59 -13.01 2.86 -184.20 -0.53 -13.53 16 14 C 0.08 1.24 9.09 59.85 0.54 1.79 16 15 C 0.24 6.51 5.21 -5.19 -0.03 6.48 16 16 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 17 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 20 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.15 2.46 7.25 -39.00 -0.28 2.17 16 25 F -0.12 -2.32 16.50 2.25 0.04 -2.28 16 26 C -0.15 -1.84 9.48 -39.21 -0.37 -2.21 16 27 C 0.16 1.52 7.15 -39.08 -0.28 1.24 16 28 F -0.12 -1.33 15.85 2.25 0.04 -1.30 16 29 C -0.19 -1.60 9.95 -39.42 -0.39 -1.99 16 30 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 31 H 0.06 0.14 7.65 -51.93 -0.40 -0.25 16 32 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.14 0.56 6.28 -52.49 -0.33 0.23 16 34 H 0.14 0.85 8.04 -52.49 -0.42 0.43 16 35 H 0.13 1.22 7.74 -52.49 -0.41 0.82 16 36 H 0.14 1.65 6.55 -52.49 -0.34 1.31 16 37 H 0.05 0.64 7.55 -51.93 -0.39 0.25 16 38 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 39 H 0.06 0.87 5.68 -51.93 -0.29 0.58 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.40 7.36 -51.92 -0.38 1.02 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.14 1.44 8.04 -52.49 -0.42 1.01 16 44 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -35.79 384.06 -7.69 -43.48 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -5.02 Total: -3.97 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.61 Total: -2.77 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.21 Total: -39.59 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.12 Total: -16.52 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.07 Total: -3.58 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.79 -7.69 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071884598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.683 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds