Wall clock time and date at job start Tue Mar 31 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35838 * 117.00178 * 2 1 4 4 C 1.38939 * 119.91018 * 0.02562 * 3 2 1 5 5 C 1.37823 * 120.12592 * 179.76739 * 4 3 2 6 6 C 1.39482 * 119.95111 * 0.46684 * 5 4 3 7 7 C 1.48163 * 120.08592 * 179.79057 * 6 5 4 8 8 C 1.39638 * 119.95915 * 129.97084 * 7 6 5 9 9 C 1.36531 * 120.22071 * 180.25565 * 8 7 6 10 10 C 1.39808 * 120.13300 * 359.49960 * 9 8 7 11 11 C 1.47507 * 120.04380 * 180.27981 * 10 9 8 12 12 O 1.21594 * 120.00313 * 130.89378 * 11 10 9 13 13 N 1.34777 * 119.99792 * 310.88695 * 11 10 9 14 14 C 1.46509 * 120.00054 * 4.41122 * 13 11 10 15 15 C 1.46497 * 120.00406 * 184.40831 * 13 11 10 16 16 C 1.50704 * 109.46928 * 89.99817 * 15 13 11 17 17 H 1.07998 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.37883 * 119.99876 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99608 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00048 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47225 * 90.00020 * 20 18 16 22 22 H 1.48502 * 109.47132 * 209.99952 * 20 18 16 23 23 H 1.48504 * 109.47029 * 330.00063 * 20 18 16 24 24 C 1.40006 * 119.90956 * 0.24669 * 10 9 8 25 25 F 1.35102 * 120.10491 * 180.02562 * 24 10 9 26 26 C 1.38017 * 119.78465 * 0.02562 * 24 10 9 27 27 C 1.39686 * 119.82759 * 359.51373 * 6 5 4 28 28 F 1.35101 * 120.06117 * 180.27274 * 27 6 5 29 29 C 1.38129 * 119.87147 * 0.25712 * 27 6 5 30 30 H 1.09002 * 109.47036 * 299.99701 * 1 2 3 31 31 H 1.08993 * 109.47252 * 60.00073 * 1 2 3 32 32 H 1.09004 * 109.47260 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.93723 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.02324 * 180.23108 * 5 4 3 35 35 H 1.07999 * 119.88917 * 0.02648 * 8 7 6 36 36 H 1.08002 * 119.92913 * 179.77175 * 9 8 7 37 37 H 1.08996 * 109.47171 * 93.01775 * 14 13 11 38 38 H 1.09001 * 109.46667 * 213.01758 * 14 13 11 39 39 H 1.08998 * 109.46728 * 333.01070 * 14 13 11 40 40 H 1.08995 * 109.47862 * 210.00423 * 15 13 11 41 41 H 1.09009 * 109.46927 * 330.00609 * 15 13 11 42 42 H 0.97008 * 119.99459 * 180.02562 * 19 18 16 43 43 H 1.07991 * 120.06787 * 179.97438 * 26 24 10 44 44 H 1.08002 * 119.97273 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2872 2.3744 0.0005 5 6 1.9083 3.6047 0.0054 6 6 3.3010 3.6818 -0.0001 7 6 3.9718 5.0028 0.0004 8 6 4.9842 5.2705 0.9241 9 6 5.6023 6.4878 0.9327 10 6 5.2316 7.4698 0.0091 11 6 5.9050 8.7821 0.0162 12 8 6.3329 9.2516 -1.0206 13 7 6.0458 9.4610 1.1720 14 6 5.6175 8.8543 2.4348 15 6 6.6272 10.8057 1.1656 16 6 5.5315 11.8258 0.9927 17 1 4.5048 11.5047 0.8976 18 6 5.8399 13.1692 0.9560 19 7 7.0903 13.5602 1.0713 20 14 4.4817 14.4338 0.7424 21 1 3.9709 14.8416 2.0758 22 1 5.0194 15.6228 0.0335 23 1 3.3751 13.8424 -0.0520 24 6 4.2208 7.2055 -0.9229 25 9 3.8598 8.1514 -1.8175 26 6 3.5945 5.9757 -0.9248 27 6 4.0616 2.5102 -0.0002 28 9 5.4109 2.5793 0.0001 29 6 3.4317 1.2809 -0.0002 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.2088 2.3150 0.0014 34 1 1.3171 4.5085 0.0096 35 1 5.2767 4.5133 1.6365 36 1 6.3823 6.6911 1.6516 37 1 6.4623 8.3444 2.8979 38 1 5.2503 9.6314 3.1051 39 1 4.8212 8.1357 2.2410 40 1 7.1432 10.9830 2.1091 41 1 7.3363 10.8910 0.3420 42 1 7.3072 14.5054 1.0458 43 1 2.8140 5.7671 -1.6414 44 1 4.0182 0.3740 -0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071884598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:37 Heat of formation + Delta-G solvation = -121.826519 kcal Electronic energy + Delta-G solvation = -31105.233540 eV Core-core repulsion = 26430.519891 eV Total energy + Delta-G solvation = -4674.713649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.05064 -49.99891 -41.38333 -41.00147 -39.66228 -38.01877 -36.72597 -34.85075 -33.54293 -31.98758 -31.80237 -30.44079 -29.42156 -28.16925 -27.47513 -25.73357 -24.63734 -23.93760 -23.32294 -22.42422 -20.78396 -19.54347 -18.77060 -18.62782 -18.29055 -18.07067 -17.57154 -17.21597 -17.00679 -16.93769 -16.73126 -16.57328 -16.35058 -16.30033 -15.94484 -15.63644 -15.41177 -15.03112 -14.71889 -14.47283 -14.27523 -14.02139 -13.86958 -13.79123 -13.56471 -13.48467 -13.31964 -13.21292 -13.01630 -12.83229 -12.78647 -12.55361 -12.34808 -12.25616 -11.98089 -11.91295 -11.76609 -10.91279 -10.67151 -10.24637 -9.98262 -9.94896 -9.53797 -9.07416 -8.26107 -6.41067 -0.58153 0.06846 0.11492 0.28852 1.33746 1.37565 1.47604 1.64318 2.14705 2.15945 2.36975 2.41443 2.56449 3.00691 3.03345 3.27733 3.34512 3.55014 3.63775 3.73992 3.95162 3.99774 4.12569 4.22434 4.26258 4.32402 4.44356 4.45850 4.49158 4.63325 4.72316 4.81314 4.87391 4.89575 4.92242 4.97123 4.98574 5.05455 5.12699 5.18173 5.20563 5.30791 5.48812 5.58663 5.65416 5.76339 6.00719 6.30282 6.56884 6.67244 7.17059 7.32997 8.81236 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.002055 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.129259 B =13618.991932 C =14142.892025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.161 3.839 4 C -0.209 4.209 5 C -0.028 4.028 6 C -0.134 4.134 7 C 0.008 3.992 8 C -0.107 4.107 9 C -0.050 4.050 10 C -0.170 4.170 11 C 0.539 3.461 12 O -0.590 6.590 13 N -0.597 5.597 14 C 0.072 3.928 15 C 0.258 3.742 16 C -0.547 4.547 17 H 0.050 0.950 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.969 3.031 21 H -0.259 1.259 22 H -0.279 1.279 23 H -0.276 1.276 24 C 0.120 3.880 25 F -0.147 7.147 26 C -0.135 4.135 27 C 0.147 3.853 28 F -0.135 7.135 29 C -0.199 4.199 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.034 0.966 41 H 0.000 1.000 42 H 0.269 0.731 43 H 0.165 0.835 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.148 -31.689 3.499 35.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.115 3.885 4 C -0.228 4.228 5 C -0.045 4.045 6 C -0.135 4.135 7 C 0.008 3.992 8 C -0.124 4.124 9 C -0.068 4.068 10 C -0.175 4.175 11 C 0.327 3.673 12 O -0.472 6.472 13 N -0.327 5.327 14 C -0.070 4.070 15 C 0.137 3.863 16 C -0.585 4.585 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.793 3.207 21 H -0.184 1.184 22 H -0.204 1.204 23 H -0.201 1.201 24 C 0.100 3.900 25 F -0.125 7.125 26 C -0.153 4.153 27 C 0.127 3.873 28 F -0.113 7.113 29 C -0.218 4.218 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.018 0.982 42 H 0.077 0.923 43 H 0.183 0.817 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.685 -31.428 2.990 35.252 hybrid contribution 0.019 1.622 -0.614 1.734 sum -15.666 -29.806 2.376 33.756 Atomic orbital electron populations 1.23472 0.75618 1.05993 1.02923 1.86064 1.24064 1.26239 1.87700 1.18857 0.91253 0.85298 0.93118 1.21538 1.02069 0.90834 1.08331 1.21172 0.91430 0.99079 0.92865 1.18574 0.94269 0.89688 1.11004 1.18599 0.94888 0.91911 0.93826 1.21189 0.95363 0.96653 0.99228 1.21093 0.98813 0.91433 0.95504 1.20118 1.00540 0.95885 1.00908 1.18691 0.79742 0.85210 0.83615 1.90742 1.51657 1.71062 1.33735 1.48087 1.59986 1.17169 1.07452 1.22180 1.01081 0.99216 0.84475 1.18858 0.93343 0.77738 0.96381 1.21653 0.93792 0.92073 1.51015 0.93217 1.25871 0.98315 1.00550 0.94363 1.70050 1.19054 1.16891 1.50445 0.85397 0.78550 0.77826 0.78936 1.18358 1.20375 1.20127 1.17910 0.96097 0.87469 0.88529 1.91516 1.90561 1.64459 1.65990 1.21216 1.02448 0.90010 1.01634 1.17356 0.76662 0.93103 1.00156 1.91528 1.29199 1.97123 1.93498 1.20269 0.93272 0.97389 1.10899 0.90952 0.91084 0.86315 0.81599 0.82346 0.82070 0.82323 0.89898 0.91094 0.89307 0.94832 0.98177 0.92252 0.81705 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.64 10.49 -91.73 -0.96 -4.60 16 3 C 0.16 1.98 6.69 22.57 0.15 2.13 16 4 C -0.21 -1.90 9.02 22.34 0.20 -1.70 16 5 C -0.03 -0.31 9.50 22.47 0.21 -0.10 16 6 C -0.13 -2.15 5.47 -19.99 -0.11 -2.26 16 7 C 0.01 0.16 5.32 -20.01 -0.11 0.06 16 8 C -0.11 -2.10 8.78 22.21 0.20 -1.91 16 9 C -0.05 -1.25 7.54 22.25 0.17 -1.08 16 10 C -0.17 -6.01 4.90 -20.03 -0.10 -6.11 16 11 C 0.54 25.48 6.99 86.69 0.61 26.09 16 12 O -0.59 -34.45 16.20 -4.01 -0.06 -34.51 16 13 N -0.60 -27.23 2.86 -854.93 -2.44 -29.67 16 14 C 0.07 2.27 9.09 127.77 1.16 3.43 16 15 C 0.26 14.51 5.21 85.64 0.45 14.96 16 16 C -0.55 -32.81 9.39 25.60 0.24 -32.57 16 17 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 18 C 0.01 0.49 5.46 84.66 0.46 0.96 16 19 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 20 Si 0.97 46.14 29.54 68.60 2.03 48.17 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 C 0.12 4.04 7.25 22.65 0.16 4.21 16 25 F -0.15 -6.00 16.50 44.97 0.74 -5.26 16 26 C -0.13 -3.17 9.48 22.51 0.21 -2.96 16 27 C 0.15 2.49 7.15 22.59 0.16 2.65 16 28 F -0.14 -2.67 15.85 44.97 0.71 -1.96 16 29 C -0.20 -2.90 9.95 22.37 0.22 -2.68 16 30 H 0.07 0.05 7.65 -2.39 -0.02 0.03 16 31 H 0.07 0.07 7.65 -2.39 -0.02 0.05 16 32 H 0.12 -0.02 8.14 -2.38 -0.02 -0.04 16 33 H 0.17 0.53 6.28 -2.91 -0.02 0.52 16 34 H 0.16 1.22 8.04 -2.91 -0.02 1.20 16 35 H 0.16 2.34 7.74 -2.91 -0.02 2.31 16 36 H 0.16 3.33 6.55 -2.91 -0.02 3.31 16 37 H 0.08 2.04 7.55 -2.39 -0.02 2.02 16 38 H 0.07 2.29 8.09 -2.39 -0.02 2.27 16 39 H 0.09 2.33 5.68 -2.39 -0.01 2.32 16 40 H 0.03 1.87 8.07 -2.39 -0.02 1.85 16 41 H 0.00 0.01 7.36 -2.38 -0.02 -0.01 16 42 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 43 H 0.17 2.99 8.04 -2.92 -0.02 2.96 16 44 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -84.06 384.06 6.75 -77.31 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.05 Total: 2.97 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.40 Total: 4.26 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -2.16 Total: -86.38 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.03 Total: -39.11 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 1.46 Total: -7.22 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -84.06 6.75 -77.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071884598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.516 kcal (2) G-P(sol) polarization free energy of solvation -84.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds